MS016752 (gene) Bitter gourd (TR) v1

Overview


Name	MS016752
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein SIEL isoform X1
Location	scaffold563: 636674 .. 636805 (-)
RNA-Seq Expression	MS016752
Synteny	MS016752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACATGACAAGTCAGTTTATCTTTTTGGATTTCCTTCTCCTTGGAGGTTGTGACGAGATTAGAGAATTTACCTATATTGTTCCATTCTGTAGAACCTCAAAAGCTTCTTCCTTTGTAGCTACGATTTTAGTG

mRNA sequence

GACATGACAAGTCAGTTTATCTTTTTGGATTTCCTTCTCCTTGGAGGTTGTGACGAGATTAGAGAATTTACCTATATTGTTCCATTCTGTAGAACCTCAAAAGCTTCTTCCTTTGTAGCTACGATTTTAGTG

Coding sequence (CDS)

GACATGACAAGTCAGTTTATCTTTTTGGATTTCCTTCTCCTTGGAGGTTGTGACGAGATTAGAGAATTTACCTATATTGTTCCATTCTGTAGAACCTCAAAAGCTTCTTCCTTTGTAGCTACGATTTTAGTG

Protein sequence

DMTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV

Homology

[Close]

BLAST of MS016752 vs. NCBI nr
Match: XP_038894154.1 (protein SIEL [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   DMTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           +MTSQFIFLDFL LGGCDE+REFTYIVPF RT KASSF+A I +
Sbjct: 733 NMTSQFIFLDFLSLGGCDEVREFTYIVPFYRTPKASSFIARICI 776

[Close]

BLAST of MS016752 vs. NCBI nr
Match: XP_008463333.1 (PREDICTED: protein SIEL isoform X2 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-09
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   DMTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           +MTSQFIFLDFL LGGCDE+REF Y VPF RT KASSF+A I +
Sbjct: 703 NMTSQFIFLDFLSLGGCDEVREFMYTVPFYRTPKASSFIAKICI 746

[Close]

BLAST of MS016752 vs. NCBI nr
Match: XP_022157325.1 (protein SIEL isoform X1 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-09
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2   MTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           MTSQF+FLDF + GGCDE+REFTY+VPF RT KASSF+A I +
Sbjct: 732 MTSQFVFLDFPVFGGCDEVREFTYVVPFYRTPKASSFIARICI 774

[Close]

BLAST of MS016752 vs. NCBI nr
Match: XP_008463329.1 (PREDICTED: protein SIEL isoform X1 [Cucumis melo] >XP_016903038.1 PREDICTED: protein SIEL isoform X1 [Cucumis melo] >KAA0051891.1 protein SIEL isoform X1 [Cucumis melo var. makuwa] >TYK17144.1 protein SIEL isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-09
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   DMTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           +MTSQFIFLDFL LGGCDE+REF Y VPF RT KASSF+A I +
Sbjct: 733 NMTSQFIFLDFLSLGGCDEVREFMYTVPFYRTPKASSFIAKICI 776

[Close]

BLAST of MS016752 vs. NCBI nr
Match: XP_022157326.1 (protein SIEL isoform X2 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-09
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2   MTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           MTSQF+FLDF + GGCDE+REFTY+VPF RT KASSF+A I +
Sbjct: 615 MTSQFVFLDFPVFGGCDEVREFTYVVPFYRTPKASSFIARICI 657

[Close]

BLAST of MS016752 vs. ExPASy TrEMBL
Match: A0A1S3CKJ8 (protein SIEL isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501508 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   DMTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           +MTSQFIFLDFL LGGCDE+REF Y VPF RT KASSF+A I +
Sbjct: 733 NMTSQFIFLDFLSLGGCDEVREFMYTVPFYRTPKASSFIAKICI 776

[Close]

BLAST of MS016752 vs. ExPASy TrEMBL
Match: A0A5A7UEC0 (Protein SIEL isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2273G00030 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   DMTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           +MTSQFIFLDFL LGGCDE+REF Y VPF RT KASSF+A I +
Sbjct: 733 NMTSQFIFLDFLSLGGCDEVREFMYTVPFYRTPKASSFIAKICI 776

[Close]

BLAST of MS016752 vs. ExPASy TrEMBL
Match: A0A6J1DXR0 (protein SIEL isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024055 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2   MTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           MTSQF+FLDF + GGCDE+REFTY+VPF RT KASSF+A I +
Sbjct: 615 MTSQFVFLDFPVFGGCDEVREFTYVVPFYRTPKASSFIARICI 657

[Close]

BLAST of MS016752 vs. ExPASy TrEMBL
Match: A0A6J1DSR4 (protein SIEL isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024055 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 2   MTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           MTSQF+FLDF + GGCDE+REFTY+VPF RT KASSF+A I +
Sbjct: 732 MTSQFVFLDFPVFGGCDEVREFTYVVPFYRTPKASSFIARICI 774

[Close]

BLAST of MS016752 vs. ExPASy TrEMBL
Match: A0A1S3CIY4 (protein SIEL isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501508 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   DMTSQFIFLDFLLLGGCDEIREFTYIVPFCRTSKASSFVATILV 45
           +MTSQFIFLDFL LGGCDE+REF Y VPF RT KASSF+A I +
Sbjct: 703 NMTSQFIFLDFLSLGGCDEVREFMYTVPFYRTPKASSFIAKICI 746

The following BLAST results are available for this feature:

BLAST of MS016752 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894154.1	2.2e-10	79.55	protein SIEL [Benincasa hispida]	[more]
XP_008463333.1	4.2e-09	75.00	PREDICTED: protein SIEL isoform X2 [Cucumis melo]	[more]
XP_022157325.1	4.2e-09	72.09	protein SIEL isoform X1 [Momordica charantia]	[more]
XP_008463329.1	4.2e-09	75.00	PREDICTED: protein SIEL isoform X1 [Cucumis melo] >XP_016903038.1 PREDICTED: pro...	[more]
XP_022157326.1	4.2e-09	72.09	protein SIEL isoform X2 [Momordica charantia]	[more]

BLAST of MS016752 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKJ8	2.0e-09	75.00	protein SIEL isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501508 PE=4 SV=1	[more]
A0A5A7UEC0	2.0e-09	75.00	Protein SIEL isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DXR0	2.0e-09	72.09	protein SIEL isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024055 PE=4 SV=1	[more]
A0A6J1DSR4	2.0e-09	72.09	protein SIEL isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024055 PE=4 SV=1	[more]
A0A1S3CIY4	2.0e-09	75.00	protein SIEL isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501508 PE=4 SV=1	[more]

BLAST of MS016752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016752.1	MS016752.1	mRNA