MS016746 (gene) Bitter gourd (TR) v1

Overview


Name	MS016746
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	UvrABC system C protein
Location	scaffold563: 590980 .. 592990 (+)
RNA-Seq Expression	MS016746
Synteny	MS016746

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTGGAAATTTCATAAACAGAGTAGTTTCTTATCTCGTGAATGAACTGCTCGTCGATAGTCTTGCGAACAGGTAACTAGTGTTCAGGCTTAATTGCATTACAGGATGTTTCTCCTCATGCTTGTATTTGAATTAGATGTGATGATATTTGATAAGAAGCTTCATTCTCTGGCCAGAGGGACCAATTAGTTCCTATTTGGCTCGTTCCATTGAAGCAAAACATACTCAAATTTTCTTATGTGTTCATCTGCTGCCGAAATGGTTGGCCGTGCAGATGTAGAGATTTGAGAAATTTTTGCTACAGTTTTTTGTTTTTGTTTTTTCCCCGTTTTCTATAGAATTTATGTATTATATATGTTTGTTAAAGAACTGCTAGAATGGGCAACTTCAGCGGTTAGGCTTAGAGAAAATTTAATCTTATAAACATAAGAAGTTGGTTTATCTGCTGCTAAAATGGCTGTGCGTGCACATTAGGAGATTTCAGAAAATTTCGCTGCAGATCCGTTTTCTATTTCTCATATTTAATTTCTGATCTATGTTTGTTAAATCACTGCTAGAATGGAAAGCTAAGCAGTTGGGTTGGTGTAATTTTTTAATCCTTTCATATTTTTTCATGTGCGTGGTCAGTTCAGTTATTAGTAATATAGAATGGAATAAAGAAAACATAACTAAGATTTGAACTCAGACTCTTTTTTCTTTGGTATCATATTAGATCAATATCGAGCTGAATTTAAGCCATTGGGTAATGGTATTGTTTTTTTCATAGAAGGTTATTTTATTGGAAGCATACATTATGCTAAAGCAGCAGGGGAGGAAAGCTTCATTGAAGATAAGGAAGTACCTTAGGAATTAGTAATTCCTATGTGTTTCCAGACACCAAATGTTGTAGGGTCATGCGGTTGCTCCGTGAGATTAGTCGAGATATGCGTAAGTTGGCCCGGACACTCATGAATATCGTAAAAAAAAAAAAAAGAAAAGAAGCTCAAAGGTAGAAAACTTTTTAGAAAGCTTATACCTAGATAGAGCCACTAACACAATGTGATCCCACAAAACAGAAAAGCTCTCTCTTGACTAAGAAAAATTATATGTTAATTCTAACTAATTAGTCAATAGAAAAGCTATAATATAATTTAAGTATTTAACCACTGTAGGGATGACCACAGTAGCAAATGTTGTAAAGACTATGCCATTTAATCTTGTTAATTCATTGTCCTTAAATTACTCTTATGTCATGTGTATATTATGAATAGAAGGGCTGTGATCTGGGTCGCACTACCTTAGATTGCCAGTACCTTGGATTTTAACTTCTGTAACTGAATTTTTTTCTTTTTTTTTTATATATTATGTTTACACAATTCCTTTTATTCACTGTCCCCTTTATTTATATTCATGTCGTTCTTTGTTCTGTTCAAAATTGTATCAAGCGGCTTCAACCAACTGTTGTTATTTTGGCCTCTGGAATACTGAATAGTGTCTCTGTTCTCACCACGATGGTCTCTCTTACTCACCTGTTTGAACTGTAGCTAAGTTGACTTCGTAGGCTCGTAATGATTGTGGAGTAGATCATATCAATTATGTTTTTAAGAGTTGAGCCTTTGAGGCATTCTTTCCCTTGCATTTCTGCCATTGAATCGAACACGTTCAAGCTTAGTGAAAACTGAAAAGTCACATTTGTTTACATAACTATACTAGCAACGTTGTTTAGTGGTTACTAAACCGTTCATTGTTGAGCAATTCTTCATTATCTCATTTTCCTTTTCCAGCCGTTCGTTTCAAAGGTTTGCGGTGAGGACATCAAAACAAATCGAGGATATATCTAACAAGGGTAGAAACGTTACTGTTTTCGCTTCATTCGTGTCGATTTAACTCCTCCTGTTGGTTGTTGAGCTGATTTAACTTATGCAACGAGAATTTGGAATTGTCTTGCAGCTGCACAGAAGAAGCAAGAACTTGCGGAACAGGTGAAAGATCTGTCTAAAAATTTCGAGGTGAGCTGCTTCTTACAT

mRNA sequence

ATGGCGGGTGGAAATTTCATAAACAGAGTAGTTTCTTATCTCGTGAATGAACTGCTCGTCGATAGTCTTGCGAACAGCCGTTCGTTTCAAAGGTTTGCGGTGAGGACATCAAAACAAATCGAGGATATATCTAACAAGGCTGCACAGAAGAAGCAAGAACTTGCGGAACAGGTGAAAGATCTGTCTAAAAATTTCGAGGTGAGCTGCTTCTTACAT

Coding sequence (CDS)

ATGGCGGGTGGAAATTTCATAAACAGAGTAGTTTCTTATCTCGTGAATGAACTGCTCGTCGATAGTCTTGCGAACAGCCGTTCGTTTCAAAGGTTTGCGGTGAGGACATCAAAACAAATCGAGGATATATCTAACAAGGCTGCACAGAAGAAGCAAGAACTTGCGGAACAGGTGAAAGATCTGTCTAAAAATTTCGAGGTGAGCTGCTTCTTACAT

Protein sequence

MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFEVSCFLH

Homology

[Close]

BLAST of MS016746 vs. NCBI nr
Match: XP_022145531.1 (uncharacterized protein LOC111014959 [Momordica charantia] >XP_022145532.1 uncharacterized protein LOC111014959 [Momordica charantia] >XP_022145533.1 uncharacterized protein LOC111014959 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 5.2e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFE 67
          LSKNFE
Sbjct: 61 LSKNFE 66

[Close]

BLAST of MS016746 vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-22
Identity = 60/66 (90.91%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF++RVVSYLVNE+LV+SLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFE 67
          LSKNF+
Sbjct: 61 LSKNFD 66

[Close]

BLAST of MS016746 vs. NCBI nr
Match: XP_022949523.1 (uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 uncharacterized protein LOC111470102 [Cucurbita maxima] >XP_023539748.1 uncharacterized protein LOC111800336 [Cucurbita pepo subsp. pepo] >KAG6596336.1 hypothetical protein SDJN03_09516, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027888.1 hypothetical protein SDJN02_09065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.4 bits (285), Expect = 4.1e-22
Identity = 60/66 (90.91%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF++RVVSYLVNE+LV+SLANSRSFQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFE 67
          LSKNFE
Sbjct: 61 LSKNFE 66

[Close]

BLAST of MS016746 vs. NCBI nr
Match: XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 5.4e-22
Identity = 59/66 (89.39%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF++RVVSYLVNE+LV+SLANSR+FQRFAVRTSKQIEDISNKAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFE 67
          LSKNF+
Sbjct: 61 LSKNFD 66

[Close]

BLAST of MS016746 vs. NCBI nr
Match: XP_004137707.1 (uncharacterized protein LOC101209674 [Cucumis sativus] >KGN58740.1 hypothetical protein Csa_001726 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 5.4e-22
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF++RV SYLVNE+LV+SLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFVHRVFSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFE 67
           SKNF+
Sbjct: 61 FSKNFD 66

[Close]

BLAST of MS016746 vs. ExPASy TrEMBL
Match: A0A6J1CWK8 (uncharacterized protein LOC111014959 OS=Momordica charantia OX=3673 GN=LOC111014959 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFE 67
          LSKNFE
Sbjct: 61 LSKNFE 66

[Close]

BLAST of MS016746 vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.9e-23
Identity = 60/66 (90.91%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF++RVVSYLVNE+LV+SLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFE 67
          LSKNF+
Sbjct: 61 LSKNFD 66

[Close]

BLAST of MS016746 vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 60/66 (90.91%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF++RVVSYLVNE+LV+SLANSRSFQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFE 67
          LSKNFE
Sbjct: 61 LSKNFE 66

[Close]

BLAST of MS016746 vs. ExPASy TrEMBL
Match: A0A6J1GCB5 (uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC111452848 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 60/66 (90.91%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF++RVVSYLVNE+LV+SLANSRSFQRFAVRTSKQIEDIS KAAQKKQELAEQ+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFE 67
          LSKNFE
Sbjct: 61 LSKNFE 66

[Close]

BLAST of MS016746 vs. ExPASy TrEMBL
Match: A0A6J1IZW4 (uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.6e-22
Identity = 59/66 (89.39%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60
          MAGGNF++RVVSYLVNE+LV+SLANSR+FQRFAVRTSKQIEDISNKAA+KKQELAEQVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFE 67
          LSKNF+
Sbjct: 61 LSKNFD 66

[Close]

BLAST of MS016746 vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 6.8e-15
Identity = 35/64 (54.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 3  GGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLS 62
          GGNFI RV+SY+ NE +V+ LANS +FQRFAVRTSK+IE++S  AA+ ++++A+Q+++ +
Sbjct: 4  GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63

Query: 63 KNFE 67
          KN +
Sbjct: 64 KNID 67

The following BLAST results are available for this feature:

BLAST of MS016746 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145531.1	5.2e-25	100.00	uncharacterized protein LOC111014959 [Momordica charantia] >XP_022145532.1 uncha...	[more]
XP_022935686.1	1.8e-22	90.91	uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet...	[more]
XP_022949523.1	4.1e-22	90.91	uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 unchar...	[more]
XP_022983627.1	5.4e-22	89.39	uncharacterized protein LOC111482182 [Cucurbita maxima]	[more]
XP_004137707.1	5.4e-22	89.39	uncharacterized protein LOC101209674 [Cucumis sativus] >KGN58740.1 hypothetical ...	[more]

BLAST of MS016746 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016746 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWK8	2.5e-25	100.00	uncharacterized protein LOC111014959 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1F5E7	8.9e-23	90.91	uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A6J1I5H8	2.0e-22	90.91	uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102...	[more]
A0A6J1GCB5	2.0e-22	90.91	uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1IZW4	2.6e-22	89.39	uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182...	[more]

BLAST of MS016746 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01350.1	6.8e-15	54.69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..64
None	No IPR available	PANTHER	PTHR34966	OSJNBA0043L24.15 PROTEIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016746.1	MS016746.1	mRNA