MS016729 (gene) Bitter gourd (TR) v1

Overview
NameMS016729
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf3
Locationscaffold563: 462530 .. 462661 (-)
RNA-Seq ExpressionMS016729
SyntenyMS016729
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATTATATATCTATATGTCGATCTTATTGACATAAGAAATGACGAACATATGAAAGTTTTGGAATATTATTTTCGGACACTAAAGCGAAACTCGTTCTTACCACAAACTTTTAATAATATAGTTGTAATA

mRNA sequence

TCAATTATATATCTATATGTCGATCTTATTGACATAAGAAATGACGAACATATGAAAGTTTTGGAATATTATTTTCGGACACTAAAGCGAAACTCGTTCTTACCACAAACTTTTAATAATATAGTTGTAATA

Coding sequence (CDS)

TCAATTATATATCTATATGTCGATCTTATTGACATAAGAAATGACGAACATATGAAAGTTTTGGAATATTATTTTCGGACACTAAAGCGAAACTCGTTCTTACCACAAACTTTTAATAATATAGTTGTAATA

Protein sequence

SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI
Homology
BLAST of MS016729 vs. NCBI nr
Match: XP_007162373.1 (hypothetical protein PHAVU_001G146500g [Phaseolus vulgaris] >ESW34367.1 hypothetical protein PHAVU_001G146500g [Phaseolus vulgaris])

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-05
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 7  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
          +DLI   N+EH K LEYYFRTL+RNSFL + FNN+VVI
Sbjct: 26 IDLIHTSNEEHTKALEYYFRTLERNSFLLEAFNNMVVI 63

BLAST of MS016729 vs. NCBI nr
Match: GAV83948.1 (TPR_11 domain-containing protein, partial [Cephalotus follicularis])

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI   N EH K LEYYFR LKRN FLPQ FNN+VVI
Sbjct: 65  SYILYNIGLIHASNGEHTKALEYYFRALKRNPFLPQAFNNMVVI 108

BLAST of MS016729 vs. NCBI nr
Match: YP_009913639.1 (photosystem I P700 chlorophyll a apoprotein A2 [Luffa acutangula] >QLJ93040.1 photosystem I P700 chlorophyll a apoprotein A2 [Luffa acutangula])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 0

Query: 7   VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 78  IGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVI 115

BLAST of MS016729 vs. NCBI nr
Match: YP_009869365.1 (photosystem I assembly protein Ycf3 [Allium polyrhizum] >QKJ80954.1 photosystem I assembly protein Ycf3 [Allium polyrhizum])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI   N EH K LEYYFR L+RN FLPQ FNNIVVI
Sbjct: 73  SYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNIVVI 116

BLAST of MS016729 vs. NCBI nr
Match: QFQ47800.1 (hypothetical chloroplast RF34 [Anerincleistus bracteatus])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 0

Query: 7   VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 78  IGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVI 115

BLAST of MS016729 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-07
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 73  SYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVI 116

BLAST of MS016729 vs. ExPASy Swiss-Prot
Match: A8W3C5 (Photosystem I assembly protein Ycf3 OS=Cuscuta exaltata OX=476139 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-07
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI   N EHMK LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 72  SYILYNIGLIHTSNGEHMKALEYYFRALERNPFLPQAFNNMAVI 115

BLAST of MS016729 vs. ExPASy Swiss-Prot
Match: A7M967 (Photosystem I assembly protein Ycf3 OS=Cuscuta reflexa OX=4129 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-07
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI   N EHMK LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 72  SYILYNIGLIHTSNGEHMKALEYYFRALERNPFLPQAFNNMAVI 115

BLAST of MS016729 vs. ExPASy Swiss-Prot
Match: Q09X16 (Photosystem I assembly protein Ycf3 OS=Morus indica OX=248361 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-07
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 72  SYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVI 115

BLAST of MS016729 vs. ExPASy Swiss-Prot
Match: Q06RC8 (Photosystem I assembly protein Ycf3 OS=Jasminum nudiflorum OX=126431 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-07
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI   N EH K LEYYFR L+RNSFLPQ FNN+ VI
Sbjct: 72  SYILYNIGLIHTSNGEHTKALEYYFRALERNSFLPQAFNNMAVI 115

BLAST of MS016729 vs. ExPASy TrEMBL
Match: V7CW13 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G146500g PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-05
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 7  VDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
          +DLI   N+EH K LEYYFRTL+RNSFL + FNN+VVI
Sbjct: 26 IDLIHTSNEEHTKALEYYFRTLERNSFLLEAFNNMVVI 63

BLAST of MS016729 vs. ExPASy TrEMBL
Match: A0A1Q3CV61 (TPR_11 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_27393 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.1e-05
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI   N EH K LEYYFR LKRN FLPQ FNN+VVI
Sbjct: 65  SYILYNIGLIHASNGEHTKALEYYFRALKRNPFLPQAFNNMVVI 108

BLAST of MS016729 vs. ExPASy TrEMBL
Match: A0A6M8TS85 (Photosystem I assembly protein Ycf3 OS=Allium polyrhizum OX=105308 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.7e-05
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI   N EH K LEYYFR L+RN FLPQ FNNIVVI
Sbjct: 73  SYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNIVVI 116

BLAST of MS016729 vs. ExPASy TrEMBL
Match: A0A6B9TUJ8 (Photosystem I assembly protein Ycf3 OS=Gonostegia hirta OX=648870 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.8e-05
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 72  SYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVI 115

BLAST of MS016729 vs. ExPASy TrEMBL
Match: A0A218KG30 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.8e-05
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
           S I   + LI  RN EH K LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 73  SYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVI 116

BLAST of MS016729 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 8.4e-08
Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 1  SIIYLYVDLIDIRNDEHMKVLEYYFRTLKRNSFLPQTFNNIVVI 45
          S I   + LI   N EH K LEYYFR L+RN FLPQ FNN+ VI
Sbjct: 30 SYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_007162373.13.6e-0568.42hypothetical protein PHAVU_001G146500g [Phaseolus vulgaris] >ESW34367.1 hypothet... [more]
GAV83948.11.1e-0463.64TPR_11 domain-containing protein, partial [Cephalotus follicularis][more]
YP_009913639.11.4e-0465.79photosystem I P700 chlorophyll a apoprotein A2 [Luffa acutangula] >QLJ93040.1 ph... [more]
YP_009869365.11.4e-0463.64photosystem I assembly protein Ycf3 [Allium polyrhizum] >QKJ80954.1 photosystem ... [more]
QFQ47800.11.4e-0465.79hypothetical chloroplast RF34 [Anerincleistus bracteatus][more]
Match NameE-valueIdentityDescription
Q4VZH42.4e-0761.36Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1[more]
A8W3C52.4e-0761.36Photosystem I assembly protein Ycf3 OS=Cuscuta exaltata OX=476139 GN=ycf3 PE=3 S... [more]
A7M9672.4e-0761.36Photosystem I assembly protein Ycf3 OS=Cuscuta reflexa OX=4129 GN=ycf3 PE=3 SV=1[more]
Q09X162.4e-0761.36Photosystem I assembly protein Ycf3 OS=Morus indica OX=248361 GN=ycf3 PE=3 SV=1[more]
Q06RC83.1e-0761.36Photosystem I assembly protein Ycf3 OS=Jasminum nudiflorum OX=126431 GN=ycf3 PE=... [more]
Match NameE-valueIdentityDescription
V7CW131.8e-0568.42Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G146500g PE=4 ... [more]
A0A1Q3CV615.1e-0563.64TPR_11 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 G... [more]
A0A6M8TS856.7e-0563.64Photosystem I assembly protein Ycf3 OS=Allium polyrhizum OX=105308 GN=ycf3 PE=3 ... [more]
A0A6B9TUJ88.8e-0561.36Photosystem I assembly protein Ycf3 OS=Gonostegia hirta OX=648870 GN=ycf3 PE=3 S... [more]
A0A218KG308.8e-0561.36Photosystem I assembly protein Ycf3 OS=Cucumis sativus var. hardwickii OX=319220... [more]
Match NameE-valueIdentityDescription
ATCG00360.18.4e-0859.09Tetratricopeptide repeat (TPR)-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016729.1MS016729.1mRNA