MS016725 (gene) Bitter gourd (TR) v1

Overview


Name	MS016725
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold563: 354092 .. 355369 (-)
RNA-Seq Expression	MS016725
Synteny	MS016725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCGTGGCTGCTGCATCCTCCTTCATTGGGATTCGCCTCCCCGTTGTCCCTCCAGGTCGGGTTGGGTGCAAGCCCGATTCTCATTCGATAAAAAAAGATATCCCACCAAAGAGAGCATCAAAACCCATCTCCGATCGTCCACTGTGGTACCCGGGAGCCATAGCACCCGAGTGGCTCGACGGTAGCTTGGTGGGTGATTATGGGTTTGACCCATTTGGTTTGGCAAACCAGCAGAATACCTACAGTTCGACTTGGACTCTTTGGACCAGAACTTGGCTAAGAATGTCGCCAGTGATGTGATCGGTACCTGGTTTGAGAATGCAGATGTGAAATCGACCCGTTCCAGCCATACAGTGAGGTATTTGGGTTGCAGAGGTTCCGTGAGTGCGAGCTCGTCCATGGAAGGTGGGCTATGTTGGCCGCGATCGGTGCTCTCTCGGTCGAGTGGCTCACCGGTGTTACTTGGCAAGACGCTGGAAAGGTACTGAAATATTGTTAAGAGTATTAATAGGAAAGTAGTGAGAATATTATTTAAGATACTCTAAATTACAAGTTTTCTCGCACGCTTTTTTCAGTTCAATAACTTACACATGCAATCCTGAAAACTTTTGGTACATATGAGGCTCATATTAGTAGAACGATATTTCTAATTACTAAATCTTGGTTATGTTCACGGTTTTTGATAGAGGGAGTTAAAAGATTTAGAGAATTTGGCAGTTCTTGGAGGATAGACCGTAGCAGAGATGCCTCGGGCAATGGGCATTGCTTGAGAAATTTGTAATTTCCTTCTTAATAGTATATTACCATTTCTAGTTTATGTTGATTTCTACTTCAAATTCTGGTTAAATTCTGTGAGATTTATTTAGTATTATAATTTCAGAATAATTAGACTTAATTGCGAACCTGATGTTTCAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCGACATTGATATGGATCGAAATTCTGATGATTGGGTACATTGAGTTCCAGAGAAACGCCGAGCTTGACCCAGAGAAGAGACTTTACCCCGGGGGCAAGTACTTCGATCCACTCTGCCTAGCAGCCGATCCCGAGAAGGCAGCAACACTTCAATTTGCAGAGATCAAGCACGCTTGCCTCGCTATGGTTGCATTCCTCAGCTTTGTTGTTCAGGCTGCTGCCACTGGCAAAGGCCCGCTCAATAACTGGGCGACTCACTTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCTTCATCCTCT

mRNA sequence

AGCGTGGCTGCTGCATCCTCCTTCATTGGGATTCGCCTCCCCGTTGTCCCTCCAGGTCGGGTTGGGTGCAAGCCCGATTCTCATTCGATAAAAAAAGATATCCCACCAAAGAGAGCATCAAAACCCATCTCCGATCGTCCACTGTGGTACCCGGGAGCCATAGCACCCGAGTGGCTCGACGGTAGCTTGGTGGGTGATTATGGGTTTGACCCATTTGGTGGCAAACCAGCAGAATACCTACAGTTCGACTTGGACTCTTTGGACCAGAACTTGGCTAAGAATGTCGCCAGTGATGTGATCGGTACCTGGTTTGAGAATGCAGATGTGAAATCGCCGTTCCAGCCATACAGTGAGGTATTTGGGTTGCAGAGGTTCCGTGAGTGCGAGCTCGTCCATGGAAGGTGGGCTATGTTGGCCGCGATCGGTGCTCTCTCGGTCGAGTGGCTCACCGGTGTTACTTGGCAAGACGCTGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCGACATTGATATGGATCGAAATTCTGATGATTGGGTACATTGAGTTCCAGAGAAACGCCGAGCTTGACCCAGAGAAGAGACTTTACCCCGGGGGCAAGTACTTCGATCCACTCTGCCTAGCAGCCGATCCCGAGAAGGCAGCAACACTTCAATTTGCAGAGATCAAGCACGCTTGCCTCGCTATGGTTGCATTCCTCAGCTTTGTTGTTCAGGCTGCTGCCACTGGCAAAGGCCCGCTCAATAACTGGGCGACTCACTTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCTTCATCCTCT

Coding sequence (CDS)

AGCGTGGCTGCTGCATCCTCCTTCATTGGGATTCGCCTCCCCGTTGTCCCTCCAGGTCGGGTTGGGTGCAAGCCCGATTCTCATTCGATAAAAAAAGATATCCCACCAAAGAGAGCATCAAAACCCATCTCCGATCGTCCACTGTGGTACCCGGGAGCCATAGCACCCGAGTGGCTCGACGGTAGCTTGGTGGGTGATTATGGGTTTGACCCATTTGGTGGCAAACCAGCAGAATACCTACAGTTCGACTTGGACTCTTTGGACCAGAACTTGGCTAAGAATGTCGCCAGTGATGTGATCGGTACCTGGTTTGAGAATGCAGATGTGAAATCGCCGTTCCAGCCATACAGTGAGGTATTTGGGTTGCAGAGGTTCCGTGAGTGCGAGCTCGTCCATGGAAGGTGGGCTATGTTGGCCGCGATCGGTGCTCTCTCGGTCGAGTGGCTCACCGGTGTTACTTGGCAAGACGCTGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCGACATTGATATGGATCGAAATTCTGATGATTGGGTACATTGAGTTCCAGAGAAACGCCGAGCTTGACCCAGAGAAGAGACTTTACCCCGGGGGCAAGTACTTCGATCCACTCTGCCTAGCAGCCGATCCCGAGAAGGCAGCAACACTTCAATTTGCAGAGATCAAGCACGCTTGCCTCGCTATGGTTGCATTCCTCAGCTTTGTTGTTCAGGCTGCTGCCACTGGCAAAGGCCCGCTCAATAACTGGGCGACTCACTTGAGTGACCCACTCCACACCACCATTATTGACACATTCTCTTCATCCTCT

Protein sequence

SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFGGKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKSPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS

Homology

[Close]

BLAST of MS016725 vs. NCBI nr
Match: XP_038904041.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 474.2 bits (1219), Expect = 8.0e-130
Identity = 237/281 (84.34%), Postives = 249/281 (88.61%), Query Frame = 0


Query: 3   AAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRAS-KPISDRPLWYPGAIAPEWLDG 62
           AAASSFIG RLPV P G    +      K+  PPK++S KP+SDRPLW+PGA+APEWLDG
Sbjct: 3   AAASSFIGTRLPVAPAGSGRVQARFSFGKQKSPPKKSSKKPVSDRPLWFPGAVAPEWLDG 62

Query: 63  SLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSEV 122
           SLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKNVA DVIGT FENADVKS PFQPYSEV
Sbjct: 63  SLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEV 122

Query: 123 FGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIST 182
           FGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIST
Sbjct: 123 FGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIST 182

Query: 183 LIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLAM 242
           LIWIE+L+IGYIEFQRN ELDPEKRLYPGGKYFDPL LAADPEK  TLQ AEIKHA LAM
Sbjct: 183 LIWIEVLVIGYIEFQRNGELDPEKRLYPGGKYFDPLGLAADPEKKVTLQLAEIKHARLAM 242

Query: 243 VAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 281
           VAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDT   SS
Sbjct: 243 VAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTLFYSS 283

[Close]

BLAST of MS016725 vs. NCBI nr
Match: XP_022151483.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Momordica charantia])

HSP 1 Score: 465.3 bits (1196), Expect = 3.7e-127
Identity = 231/282 (81.91%), Postives = 247/282 (87.59%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLD 60
           + AA SSFIG RLP V P     +      KK   PK++SK ISDRPLW+PGA APEWLD
Sbjct: 7   TAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLD 66

Query: 61  GSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSE 120
           GSLVGDYGFDPFG GKPAEYLQ+DLDSLDQNLAKNVA D+IGT FEN+DVKS PFQPY+E
Sbjct: 67  GSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPYTE 126

Query: 121 VFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIS 180
           VFGLQRFRECEL+HGRWAMLA +GALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+
Sbjct: 127 VFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIT 186

Query: 181 TLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLA 240
           TLIWIE+L+IGYIEFQRNAELDPEKRLYPGGK+FDPL LA DPEK A LQ AEIKHA LA
Sbjct: 187 TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLA 246

Query: 241 MVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 281
           MVAFL F VQAA TGKGPLNNWATHLSDPLHTTIID+FSSSS
Sbjct: 247 MVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSSSS 288

[Close]

BLAST of MS016725 vs. NCBI nr
Match: KAF3448904.1 (hypothetical protein FNV43_RR09620 [Rhamnella rubrinervis])

HSP 1 Score: 462.2 bits (1188), Expect = 3.1e-126
Identity = 232/283 (81.98%), Postives = 248/283 (87.63%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEW 60
           + A ASSF+G RLP V    GRV  +      KK  P K + KP +DRPLWYPGA APEW
Sbjct: 6   AAATASSFLGTRLPDVYSNSGRVQAR-FGFGAKKRPPKKTSVKPSNDRPLWYPGAQAPEW 65

Query: 61  LDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPY 120
           LDGSLVGDYGFDPFG GKPAEYLQF+LDSLDQNLAKN+A DVIGT FENADVKS PFQPY
Sbjct: 66  LDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDVIGTRFENADVKSTPFQPY 125

Query: 121 SEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 180
           +EVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTG+TWQDAGKVELVEGSSYLGQPLPFS
Sbjct: 126 TEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFS 185

Query: 181 ISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHAC 240
           I+TLIWIE+L+IGYIEFQRNAELDPEKRLYPGGK+FDPL LAADPEK ATLQ AEIKHA 
Sbjct: 186 ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHAR 245

Query: 241 LAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 280
           LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTI DTFSSS
Sbjct: 246 LAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFSSS 287

[Close]

BLAST of MS016725 vs. NCBI nr
Match: XP_010037701.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Eucalyptus grandis] >KCW49456.1 hypothetical protein EUGRSUZ_K02983 [Eucalyptus grandis])

HSP 1 Score: 461.8 bits (1187), Expect = 4.1e-126
Identity = 231/281 (82.21%), Postives = 248/281 (88.26%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWL 60
           + AAASSFIG RLP VP  GRV  +    +  K   PK+A+K  SDRPLWYPGA APEWL
Sbjct: 6   TAAAASSFIGTRLPEVPSSGRVQARFGFGA--KKAAPKKAAKRTSDRPLWYPGATAPEWL 65

Query: 61  DGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYS 120
           DGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN A D+IGT FEN+DVKS PFQPY+
Sbjct: 66  DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNEAGDIIGTRFENSDVKSTPFQPYT 125

Query: 121 EVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 180
           EVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI
Sbjct: 126 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 185

Query: 181 STLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACL 240
           + LIWIE+++IGYIEFQRN ELDPEKRLYPGGK+FDPL LAADPEK ATLQ AEIKHA L
Sbjct: 186 TALIWIEVVVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARL 245

Query: 241 AMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 279
           AMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF+S
Sbjct: 246 AMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFTS 284

[Close]

BLAST of MS016725 vs. NCBI nr
Match: KAF8032029.1 (hypothetical protein BT93_D1050 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 461.8 bits (1187), Expect = 4.1e-126
Identity = 232/281 (82.56%), Postives = 248/281 (88.26%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWL 60
           + AAASSFIG RLP VP  GRV  +    +  K   PK+A+K  SDRPLWYPGA APEWL
Sbjct: 6   TAAAASSFIGTRLPEVPSSGRVQARFGFGT--KKAAPKKAAKRSSDRPLWYPGATAPEWL 65

Query: 61  DGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYS 120
           DGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN A D+IGT FENADVKS PFQPY+
Sbjct: 66  DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNEAGDIIGTRFENADVKSTPFQPYT 125

Query: 121 EVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 180
           EVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI
Sbjct: 126 EVFGLQRFRECELIHGRWAMLATLGALAVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 185

Query: 181 STLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACL 240
           + LIWIE+++IGYIEFQRNAELDPEKRLYPGGK+FDPL LAADPEK A LQ AEIKHA L
Sbjct: 186 TALIWIEVVVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKAILQLAEIKHARL 245

Query: 241 AMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 279
           AMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF+S
Sbjct: 246 AMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFTS 284

[Close]

BLAST of MS016725 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 8.8e-124
Identity = 225/284 (79.23%), Postives = 244/284 (85.92%), Query Frame = 0


Query: 1   SVAAASSFIGIRL-PVVPPGRVGCKPDSHSIKKDIPPKRASKP--ISDRPLWYPGAIAPE 60
           + AAASS +G R+ P + PG           KK   PK+++K    +DRPLWYPGAI+P+
Sbjct: 7   AAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPD 66

Query: 61  WLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQP 120
           WLDGSLVGDYGFDPFG GKPAEYLQFD+DSLDQNLAKN+A DVIGT  E AD KS PFQP
Sbjct: 67  WLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQP 126

Query: 121 YSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 180
           YSEVFG+QRFRECEL+HGRWAMLA +GALSVEWLTGVTWQDAGKVELV+GSSYLGQPLPF
Sbjct: 127 YSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPF 186

Query: 181 SISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHA 240
           SISTLIWIE+L+IGYIEFQRNAELD EKRLYPGGK+FDPL LAADPEK A LQ AEIKHA
Sbjct: 187 SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHA 246

Query: 241 CLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 280
            LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
Sbjct: 247 RLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290

[Close]

BLAST of MS016725 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.2e-117
Identity = 208/250 (83.20%), Postives = 223/250 (89.20%), Query Frame = 0


Query: 32  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQN 91
           K   PK+A   ISDRPLW+PGA +PE+LDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQN
Sbjct: 38  KKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQN 97

Query: 92  LAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWL 151
           LAKN+  +VIGT  E  D KS PFQPYSEVFGLQRFRECEL+HGRWAMLA +GA++VEWL
Sbjct: 98  LAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL 157

Query: 152 TGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGG 211
           TGVTWQDAGKVELV+GSSYLGQPLPFSISTLIWIE+L+IGYIEFQRNAELD EKRLYPGG
Sbjct: 158 TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGG 217

Query: 212 KYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLH 271
           K+FDPL LA+DP K A LQ AEIKHA LAMV FL F VQAAATGKGPLNNWATHLSDPLH
Sbjct: 218 KFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277

Query: 272 TTIIDTFSSS 280
           TTIIDTFSSS
Sbjct: 278 TTIIDTFSSS 287

[Close]

BLAST of MS016725 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 4.1e-97
Identity = 180/270 (66.67%), Postives = 216/270 (80.00%), Query Frame = 0


Query: 1   SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAI 60
           + AAAS   GIR+  P    GRV  +   S   KK  PP + S+ +    DR +W+PGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 61  APEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVK-SP 120
            PEWLDGS++GD GFDPFG GKPAEYLQ+D D LDQNLAKNVA D+IG   E++++K +P
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 121 FQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQP 180
           FQPY+EVFG+QRFRECEL+HGRWAML  +GA++VE LTG+ WQDAGKVELVEGSSYLGQP
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184

Query: 181 LPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEI 240
           LPFS++TLIWIE+L++GYIEFQRN+ELDPEKR+YPGG YFDPL LAADPEK  TL+ AEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 244

Query: 241 KHACLAMVAFLSFVVQAAATGKGPLNNWAT 263
           KH+ LAMVAFL F +QAA TGKGP++  AT
Sbjct: 245 KHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of MS016725 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 234.6 bits (597), Expect = 1.4e-60
Identity = 123/219 (56.16%), Postives = 152/219 (69.41%), Query Frame = 0


Query: 48  LWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDV---IGTW 107
           LW P    PEWLDGSL GD GFDP G  KP+E++   +D  DQN AKN    V   +   
Sbjct: 52  LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQAT 111

Query: 108 FENADVKSPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELV 167
            +    ++   PYSEVFGL RFRECEL+HGRWAMLA +GAL  E  TGV+W +AGKVEL 
Sbjct: 112 PDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL- 171

Query: 168 EGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAA-DPE 227
           +G+SY G  LPFSI+ LIWIE++++G  EF RN+E +PEKR YPGG  FDPL LA+ D E
Sbjct: 172 DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEE 231

Query: 228 KAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWA 262
           +A  L+ AEIKHA LAMV+F  + VQA +TG+G L + A
Sbjct: 232 RAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268

[Close]

BLAST of MS016725 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-33
Identity = 91/230 (39.57%), Postives = 121/230 (52.61%), Query Frame = 0


Query: 49  WYPGAIAPEWLDGSLVGDYGFDPFGGKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENAD 108
           W PG   P +LDGS  GD+GFDP G          L  +  N                  
Sbjct: 48  WMPGEPRPAYLDGSAPGDFGFDPLG----------LGEVPAN------------------ 107

Query: 109 VKSPFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEG--S 168
                        L+R++E EL+H RWAMLA  G L  E L    W  A +   + G  +
Sbjct: 108 -------------LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQA 167

Query: 169 SYLGQPLPF-SISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAA 228
           +YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG  FDPL  + DP+K  
Sbjct: 168 TYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPKKLE 227

Query: 229 TLQFAEIKHACLAMVAFLSFVVQAAA-TGKGPLNNWATHLSDPLHTTIID 275
            L+  EIK+  LA++AF+ F VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 228 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

[Close]

BLAST of MS016725 vs. ExPASy TrEMBL
Match: A0A6J1DCA5 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019415 PE=3 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.8e-127
Identity = 231/282 (81.91%), Postives = 247/282 (87.59%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLD 60
           + AA SSFIG RLP V P     +      KK   PK++SK ISDRPLW+PGA APEWLD
Sbjct: 7   TAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLD 66

Query: 61  GSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSE 120
           GSLVGDYGFDPFG GKPAEYLQ+DLDSLDQNLAKNVA D+IGT FEN+DVKS PFQPY+E
Sbjct: 67  GSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPYTE 126

Query: 121 VFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIS 180
           VFGLQRFRECEL+HGRWAMLA +GALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI+
Sbjct: 127 VFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIT 186

Query: 181 TLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLA 240
           TLIWIE+L+IGYIEFQRNAELDPEKRLYPGGK+FDPL LA DPEK A LQ AEIKHA LA
Sbjct: 187 TLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLA 246

Query: 241 MVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 281
           MVAFL F VQAA TGKGPLNNWATHLSDPLHTTIID+FSSSS
Sbjct: 247 MVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSSSS 288

[Close]

BLAST of MS016725 vs. ExPASy TrEMBL
Match: A0A059A742 (Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02983 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 2.0e-126
Identity = 231/281 (82.21%), Postives = 248/281 (88.26%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVVP-PGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWL 60
           + AAASSFIG RLP VP  GRV  +    +  K   PK+A+K  SDRPLWYPGA APEWL
Sbjct: 6   TAAAASSFIGTRLPEVPSSGRVQARFGFGA--KKAAPKKAAKRTSDRPLWYPGATAPEWL 65

Query: 61  DGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYS 120
           DGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN A D+IGT FEN+DVKS PFQPY+
Sbjct: 66  DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNEAGDIIGTRFENSDVKSTPFQPYT 125

Query: 121 EVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 180
           EVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI
Sbjct: 126 EVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 185

Query: 181 STLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACL 240
           + LIWIE+++IGYIEFQRN ELDPEKRLYPGGK+FDPL LAADPEK ATLQ AEIKHA L
Sbjct: 186 TALIWIEVVVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARL 245

Query: 241 AMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 279
           AMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF+S
Sbjct: 246 AMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFTS 284

[Close]

BLAST of MS016725 vs. ExPASy TrEMBL
Match: A0A6A1WHK8 (Chlorophyll a-b binding protein, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR2G004236 PE=3 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 8.3e-125
Identity = 230/282 (81.56%), Postives = 246/282 (87.23%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEW 60
           + AA SSF+G RL  V    GRV  +      KK  P K + KP +DRPLWYPGA APEW
Sbjct: 6   AAAATSSFMGTRLTDVYSNSGRVQAR-FGFGTKKSRPRKASVKPSTDRPLWYPGAKAPEW 65

Query: 61  LDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPY 120
           LDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQNLAKN+A DVIGT FE++DVKS PFQPY
Sbjct: 66  LDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRFESSDVKSTPFQPY 125

Query: 121 SEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 180
           SEVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFS
Sbjct: 126 SEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 185

Query: 181 ISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHAC 240
           I+ LIWIE+L+IGYIEFQRNAELDPEKRLYPGGKYFDPL LA+DPEK ATLQ AEIKHA 
Sbjct: 186 ITALIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLASDPEKKATLQLAEIKHAR 245

Query: 241 LAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 279
           LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF+S
Sbjct: 246 LAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFTS 286

[Close]

BLAST of MS016725 vs. ExPASy TrEMBL
Match: A0A7J7HME2 (Chlorophyll a-b binding protein, chloroplastic OS=Camellia sinensis OX=4442 GN=HYC85_006483 PE=3 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.9e-124
Identity = 224/280 (80.00%), Postives = 244/280 (87.14%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVVPPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEWLD 60
           S AA SSFIG R P V  G    +       K  P K+ +KP SDRPLW+PGA APEWLD
Sbjct: 61  SAAATSSFIGTRFPEVHSGSGRVQARFGFGAKKAPAKKFAKPGSDRPLWFPGAKAPEWLD 120

Query: 61  GSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPYSE 120
           G+LVGDYGFDPFG GKPAEYLQF+LDSLDQNLAKN+A D+IGT FE+ADVKS PFQPYSE
Sbjct: 121 GTLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRFESADVKSTPFQPYSE 180

Query: 121 VFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSIS 180
           VFGLQRFRECEL+HGRWAMLA +GAL+VEWLTG+TWQDAGKVEL+EGSSYLGQPLPFSI+
Sbjct: 181 VFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELLEGSSYLGQPLPFSIT 240

Query: 181 TLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHACLA 240
           TLIWIE+L+IGYIEFQRN+ELDPEKRLYPGGKYFDPL LA+DPEK ATLQ AEIKHA LA
Sbjct: 241 TLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKYFDPLGLASDPEKKATLQLAEIKHARLA 300

Query: 241 MVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 279
           M+AFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTF S
Sbjct: 301 MIAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFFS 340

[Close]

BLAST of MS016725 vs. ExPASy TrEMBL
Match: B9SQ36 (Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RCOM_0644360 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 3.2e-124
Identity = 229/282 (81.21%), Postives = 246/282 (87.23%), Query Frame = 0


Query: 1   SVAAASSFIGIRLPVV--PPGRVGCKPDSHSIKKDIPPKRASKPISDRPLWYPGAIAPEW 60
           + AAASSF+G RLP V    GRV  +    +  K   PKR++KP SDRPLWYPGA APEW
Sbjct: 6   AAAAASSFMGTRLPDVYSNSGRVQARFGFGT--KKSAPKRSAKPTSDRPLWYPGAKAPEW 65

Query: 61  LDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQPY 120
           LDGSLVGDYGFDPFG GKPAEYLQF+LDSLDQNLAKN+A D+IGT  E ADVKS PFQPY
Sbjct: 66  LDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPY 125

Query: 121 SEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 180
           SEVFGLQRFRECEL+HGRWAMLA +GAL+VEWLTGVTWQDAGKVELVEGSSYLGQPLPFS
Sbjct: 126 SEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 185

Query: 181 ISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHAC 240
           I+TLIWIE+L+IGYIEFQRN+ELDPEKRLYPGGK+FDPL LA DPEK ATLQ AEIKHA 
Sbjct: 186 ITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHAR 245

Query: 241 LAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 279
           LAMVAFL F VQAA TGKGPLNNWATHLSDPLHTTIID FSS
Sbjct: 246 LAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 285

[Close]

BLAST of MS016725 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 444.5 bits (1142), Expect = 6.3e-125
Identity = 225/284 (79.23%), Postives = 244/284 (85.92%), Query Frame = 0


Query: 1   SVAAASSFIGIRL-PVVPPGRVGCKPDSHSIKKDIPPKRASKP--ISDRPLWYPGAIAPE 60
           + AAASS +G R+ P + PG           KK   PK+++K    +DRPLWYPGAI+P+
Sbjct: 7   AAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPD 66

Query: 61  WLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVKS-PFQP 120
           WLDGSLVGDYGFDPFG GKPAEYLQFD+DSLDQNLAKN+A DVIGT  E AD KS PFQP
Sbjct: 67  WLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQP 126

Query: 121 YSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 180
           YSEVFG+QRFRECEL+HGRWAMLA +GALSVEWLTGVTWQDAGKVELV+GSSYLGQPLPF
Sbjct: 127 YSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPF 186

Query: 181 SISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEIKHA 240
           SISTLIWIE+L+IGYIEFQRNAELD EKRLYPGGK+FDPL LAADPEK A LQ AEIKHA
Sbjct: 187 SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHA 246

Query: 241 CLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 280
            LAMVAFL F VQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS
Sbjct: 247 RLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290

[Close]

BLAST of MS016725 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 424.1 bits (1089), Expect = 8.8e-119
Identity = 208/250 (83.20%), Postives = 223/250 (89.20%), Query Frame = 0


Query: 32  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQN 91
           K   PK+A   ISDRPLW+PGA +PE+LDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQN
Sbjct: 38  KKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQN 97

Query: 92  LAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWL 151
           LAKN+  +VIGT  E  D KS PFQPYSEVFGLQRFRECEL+HGRWAMLA +GA++VEWL
Sbjct: 98  LAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL 157

Query: 152 TGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGG 211
           TGVTWQDAGKVELV+GSSYLGQPLPFSISTLIWIE+L+IGYIEFQRNAELD EKRLYPGG
Sbjct: 158 TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGG 217

Query: 212 KYFDPLCLAADPEKAATLQFAEIKHACLAMVAFLSFVVQAAATGKGPLNNWATHLSDPLH 271
           K+FDPL LA+DP K A LQ AEIKHA LAMV FL F VQAAATGKGPLNNWATHLSDPLH
Sbjct: 218 KFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277

Query: 272 TTIIDTFSSS 280
           TTIIDTFSSS
Sbjct: 278 TTIIDTFSSS 287

[Close]

BLAST of MS016725 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 355.9 bits (912), Expect = 2.9e-98
Identity = 180/270 (66.67%), Postives = 216/270 (80.00%), Query Frame = 0


Query: 1   SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAI 60
           + AAAS   GIR+  P    GRV  +   S   KK  PP + S+ +    DR +W+PGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 61  APEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVK-SP 120
            PEWLDGS++GD GFDPFG GKPAEYLQ+D D LDQNLAKNVA D+IG   E++++K +P
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 121 FQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVELVEGSSYLGQP 180
           FQPY+EVFG+QRFRECEL+HGRWAML  +GA++VE LTG+ WQDAGKVELVEGSSYLGQP
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQP 184

Query: 181 LPFSISTLIWIEILMIGYIEFQRNAELDPEKRLYPGGKYFDPLCLAADPEKAATLQFAEI 240
           LPFS++TLIWIE+L++GYIEFQRN+ELDPEKR+YPGG YFDPL LAADPEK  TL+ AEI
Sbjct: 185 LPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEI 244

Query: 241 KHACLAMVAFLSFVVQAAATGKGPLNNWAT 263
           KH+ LAMVAFL F +QAA TGKGP++  AT
Sbjct: 245 KHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of MS016725 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 219.5 bits (558), Expect = 3.3e-57
Identity = 109/146 (74.66%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 32  KDIPPKRASKPISDRPLWYPGAIAPEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQN 91
           K   PK+A   ISDRPLW+PGA +PE+LDGSLVGDYGFDPFG GKPAEYLQFDLDSLDQN
Sbjct: 38  KKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQN 97

Query: 92  LAKNVASDVIGTWFENADVKS-PFQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWL 151
           LAKN+  +VIGT  E  D KS PFQPYSEVFGLQRFRECEL+HGRWAMLA +GA++VEWL
Sbjct: 98  LAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL 157

Query: 152 TGVTWQDAGKVELVEGSSYLGQPLPF 176
           TGVTWQDAGKV  +  SS L   L F
Sbjct: 158 TGVTWQDAGKVSPLFFSSLLRLCLAF 183

[Close]

BLAST of MS016725 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 202.2 bits (513), Expect = 5.4e-52
Identity = 102/169 (60.36%), Postives = 126/169 (74.56%), Query Frame = 0


Query: 1   SVAAASSFIGIRL--PVVPPGRVGCK-PDSHSIKKDIPPKRASKPI---SDRPLWYPGAI 60
           + AAAS   GIR+  P    GRV  +   S   KK  PP + S+ +    DR +W+PGA 
Sbjct: 5   TAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGAN 64

Query: 61  APEWLDGSLVGDYGFDPFG-GKPAEYLQFDLDSLDQNLAKNVASDVIGTWFENADVK-SP 120
            PEWLDGS++GD GFDPFG GKPAEYLQ+D D LDQNLAKNVA D+IG   E++++K +P
Sbjct: 65  PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTP 124

Query: 121 FQPYSEVFGLQRFRECELVHGRWAMLAAIGALSVEWLTGVTWQDAGKVE 162
           FQPY+EVFG+QRFRECEL+HGRWAML  +GA++VE LTG+ WQDAGKVE
Sbjct: 125 FQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173

The following BLAST results are available for this feature:

BLAST of MS016725 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904041.1	8.0e-130	84.34	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]
XP_022151483.1	3.7e-127	81.91	chlorophyll a-b binding protein CP29.1, chloroplastic [Momordica charantia]	[more]
KAF3448904.1	3.1e-126	81.98	hypothetical protein FNV43_RR09620 [Rhamnella rubrinervis]	[more]
XP_010037701.1	4.1e-126	82.21	chlorophyll a-b binding protein CP29.1, chloroplastic [Eucalyptus grandis] >KCW4...	[more]
KAF8032029.1	4.1e-126	82.56	hypothetical protein BT93_D1050 [Corymbia citriodora subsp. variegata]	[more]

BLAST of MS016725 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	8.8e-124	79.23	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	1.2e-117	83.20	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	4.1e-97	66.67	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	1.4e-60	56.16	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	1.4e-33	39.57	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MS016725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCA5	1.8e-127	81.91	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A059A742	2.0e-126	82.21	Chlorophyll a-b binding protein, chloroplastic OS=Eucalyptus grandis OX=71139 GN...	[more]
A0A6A1WHK8	8.3e-125	81.56	Chlorophyll a-b binding protein, chloroplastic OS=Morella rubra OX=262757 GN=CJ0...	[more]
A0A7J7HME2	1.9e-124	80.00	Chlorophyll a-b binding protein, chloroplastic OS=Camellia sinensis OX=4442 GN=H...	[more]
B9SQ36	3.2e-124	81.21	Chlorophyll a-b binding protein, chloroplastic OS=Ricinus communis OX=3988 GN=RC...	[more]

BLAST of MS016725 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	6.3e-125	79.23	light harvesting complex photosystem II	[more]
AT3G08940.2	8.8e-119	83.20	light harvesting complex photosystem II	[more]
AT2G40100.1	2.9e-98	66.67	light harvesting complex photosystem II	[more]
AT3G08940.1	3.3e-57	74.66	light harvesting complex photosystem II	[more]
AT2G40100.2	5.4e-52	60.36	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 55..249 e-value: 2.5E-42 score: 145.1
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 50..280 e-value: 2.0E-60 score: 206.1
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 3..279
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 3..279
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 39..277

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016725.1	MS016725.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane