MS016713 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGAGGAAATCGAGCAAGCGAGTCAGCTTCAGTCCTGATGTGAATGATAAGCCACCAGTCGTGCTGAAACACAGCGGCAGCGACGGCGGTGGTGGCGCCGGGATGTGGAGCTTCGGCCTGAGCAGAGAGACGAGGTACTTGCCAGTGAGGTTTCTACAGAGCCTCAAGGCCAGGGTAAGTGAAGCCATTCGCTTTGTATCCACCAGAAAATCTTCACGGAAGGTATCTTCAGCCTCCACATTTACAAGGTCAAGGTCAGTCTCGGATTCCATGGACTCCCATCGAGCCGAAGCTATTGAAGATTGCATTGAATTCTTAAACCACTCTTCATCCCTGTCAAGATCAAATTCAGTCTCTGGAAGTAGTTAC ATGTCGAGGAAATCGAGCAAGCGAGTCAGCTTCAGTCCTGATGTGAATGATAAGCCACCAGTCGTGCTGAAACACAGCGGCAGCGACGGCGGTGGTGGCGCCGGGATGTGGAGCTTCGGCCTGAGCAGAGAGACGAGGTACTTGCCAGTGAGGTTTCTACAGAGCCTCAAGGCCAGGGTAAGTGAAGCCATTCGCTTTGTATCCACCAGAAAATCTTCACGGAAGGTATCTTCAGCCTCCACATTTACAAGGTCAAGGTCAGTCTCGGATTCCATGGACTCCCATCGAGCCGAAGCTATTGAAGATTGCATTGAATTCTTAAACCACTCTTCATCCCTGTCAAGATCAAATTCAGTCTCTGGAAGTAGTTAC ATGTCGAGGAAATCGAGCAAGCGAGTCAGCTTCAGTCCTGATGTGAATGATAAGCCACCAGTCGTGCTGAAACACAGCGGCAGCGACGGCGGTGGTGGCGCCGGGATGTGGAGCTTCGGCCTGAGCAGAGAGACGAGGTACTTGCCAGTGAGGTTTCTACAGAGCCTCAAGGCCAGGGTAAGTGAAGCCATTCGCTTTGTATCCACCAGAAAATCTTCACGGAAGGTATCTTCAGCCTCCACATTTACAAGGTCAAGGTCAGTCTCGGATTCCATGGACTCCCATCGAGCCGAAGCTATTGAAGATTGCATTGAATTCTTAAACCACTCTTCATCCCTGTCAAGATCAAATTCAGTCTCTGGAAGTAGTTAC MSRKSSKRVSFSPDVNDKPPVVLKHSGSDGGGGAGMWSFGLSRETRYLPVRFLQSLKARVSEAIRFVSTRKSSRKVSSASTFTRSRSVSDSMDSHRAEAIEDCIEFLNHSSSLSRSNSVSGSSY Homology
BLAST of MS016713 vs. NCBI nr
Match: XP_022145644.1 (josephin-like protein [Momordica charantia]) HSP 1 Score: 231.5 bits (589), Expect = 4.0e-57 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
BLAST of MS016713 vs. NCBI nr
Match: XP_008442460.1 (PREDICTED: josephin-like protein [Cucumis melo] >KAA0044156.1 josephin-like protein [Cucumis melo var. makuwa] >TYK24979.1 josephin-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51 Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 0
BLAST of MS016713 vs. NCBI nr
Match: XP_038903233.1 (josephin-like protein [Benincasa hispida]) HSP 1 Score: 211.5 bits (537), Expect = 4.3e-51 Identity = 115/124 (92.74%), Postives = 119/124 (95.97%), Query Frame = 0
BLAST of MS016713 vs. NCBI nr
Match: XP_004137733.1 (josephin-like protein [Cucumis sativus] >KGN58786.1 hypothetical protein Csa_001490 [Cucumis sativus]) HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50 Identity = 115/124 (92.74%), Postives = 118/124 (95.16%), Query Frame = 0
BLAST of MS016713 vs. NCBI nr
Match: KAG6580487.1 (hypothetical protein SDJN03_20489, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 201.4 bits (511), Expect = 4.4e-48 Identity = 112/126 (88.89%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of MS016713 vs. ExPASy Swiss-Prot
Match: O82391 (Josephin-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g29640 PE=2 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 4.1e-04 Identity = 32/89 (35.96%), Postives = 46/89 (51.69%), Query Frame = 0
BLAST of MS016713 vs. ExPASy TrEMBL
Match: A0A6J1CVV1 (josephin-like protein OS=Momordica charantia OX=3673 GN=LOC111015044 PE=4 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
BLAST of MS016713 vs. ExPASy TrEMBL
Match: A0A5D3DNT5 (Josephin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00960 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 5.4e-52 Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 0
BLAST of MS016713 vs. ExPASy TrEMBL
Match: A0A1S3B5Q5 (josephin-like protein OS=Cucumis melo OX=3656 GN=LOC103486317 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 5.4e-52 Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 0
BLAST of MS016713 vs. ExPASy TrEMBL
Match: A0A0A0LFD2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732440 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 7.8e-51 Identity = 115/124 (92.74%), Postives = 118/124 (95.16%), Query Frame = 0
BLAST of MS016713 vs. ExPASy TrEMBL
Match: A0A6J1I1K7 (uncharacterized protein LOC111470059 OS=Cucurbita maxima OX=3661 GN=LOC111470059 PE=4 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 3.8e-45 Identity = 106/124 (85.48%), Postives = 113/124 (91.13%), Query Frame = 0
BLAST of MS016713 vs. TAIR 10
Match: AT5G01225.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 75.1 bits (183), Expect = 4.4e-14 Identity = 59/132 (44.70%), Postives = 79/132 (59.85%), Query Frame = 0
BLAST of MS016713 vs. TAIR 10
Match: AT3G09032.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 2.4e-12 Identity = 60/146 (41.10%), Postives = 80/146 (54.79%), Query Frame = 0
BLAST of MS016713 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related ) HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07 Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 0
BLAST of MS016713 vs. TAIR 10
Match: AT2G29640.1 (JOSEPHIN-like protein ) HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05 Identity = 32/89 (35.96%), Postives = 46/89 (51.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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