MS016706 (gene) Bitter gourd (TR) v1

Overview


Name	MS016706
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DUF962 domain-containing protein
Location	scaffold563: 196507 .. 196842 (-)
RNA-Seq Expression	MS016706
Synteny	MS016706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCAGAAGTTTAGATGAGTTCTGGGTCTTCTACATGAACCAGCACTCCAAACCATCGACGAGACGTTGGCACTTTATCGGAACTCTTTCTGCTATCTTCTTCTTCCTATGCTCGCTACTGTTTAGCTGGTGGTTTCTGTTCTTTGTGCCATTATTTGGGTATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAGAATGTTCCAGCCTCGTTCGGCCATCCATTTTGGTCTCTTCTATGTGATTTCAAGATGTTCGGATTGATGCTTACTGGGAACATGGACAGAGAAATAAAGAGGCTGGGAAAAAGACCTGTGTTGCAGGCGTTC

mRNA sequence

ATGAATTTCAGAAGTTTAGATGAGTTCTGGGTCTTCTACATGAACCAGCACTCCAAACCATCGACGAGACGTTGGCACTTTATCGGAACTCTTTCTGCTATCTTCTTCTTCCTATGCTCGCTACTGTTTAGCTGGTGGTTTCTGTTCTTTGTGCCATTATTTGGGTATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAGAATGTTCCAGCCTCGTTCGGCCATCCATTTTGGTCTCTTCTATGTGATTTCAAGATGTTCGGATTGATGCTTACTGGGAACATGGACAGAGAAATAAAGAGGCTGGGAAAAAGACCTGTGTTGCAGGCGTTC

Coding sequence (CDS)

ATGAATTTCAGAAGTTTAGATGAGTTCTGGGTCTTCTACATGAACCAGCACTCCAAACCATCGACGAGACGTTGGCACTTTATCGGAACTCTTTCTGCTATCTTCTTCTTCCTATGCTCGCTACTGTTTAGCTGGTGGTTTCTGTTCTTTGTGCCATTATTTGGGTATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAGAATGTTCCAGCCTCGTTCGGCCATCCATTTTGGTCTCTTCTATGTGATTTCAAGATGTTCGGATTGATGCTTACTGGGAACATGGACAGAGAAATAAAGAGGCTGGGAAAAAGACCTGTGTTGCAGGCGTTC

Protein sequence

MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAWYSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF

Homology

[Close]

BLAST of MS016706 vs. NCBI nr
Match: XP_022145672.1 (uncharacterized protein LOC111015066 [Momordica charantia] >XP_022145673.1 uncharacterized protein LOC111015066 [Momordica charantia])

HSP 1 Score: 240.4 bits (612), Expect = 7.7e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. NCBI nr
Match: XP_022946132.1 (uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022946207.1 uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022971548.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_022971549.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_022971550.1 uncharacterized protein LOC111470232 [Cucurbita maxima] >XP_023538975.1 uncharacterized protein LOC111799748 [Cucurbita pepo subsp. pepo] >XP_023538976.1 uncharacterized protein LOC111799748 [Cucurbita pepo subsp. pepo] >XP_038903172.1 uncharacterized protein LOC120089838 [Benincasa hispida] >KAG7027913.1 hypothetical protein SDJN02_09092, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. NCBI nr
Match: XP_008442469.1 (PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >XP_016899716.1 PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >KAA0044148.1 DUF962 domain-containing protein [Cucumis melo var. makuwa] >TYK24989.1 DUF962 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 7.2e-58
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLF VPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPA+FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. NCBI nr
Match: XP_004137736.1 (uncharacterized protein LOC101216787 [Cucumis sativus] >KGN58796.1 hypothetical protein Csa_001372 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 3.6e-57
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFF+EENVPA+F HPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQ F
Sbjct: 61  YSHFFIEENVPATFAHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQIF 112

[Close]

BLAST of MS016706 vs. NCBI nr
Match: XP_010256686.1 (PREDICTED: uncharacterized protein LOC104597016 [Nelumbo nucifera] >DAD26624.1 TPA_asm: hypothetical protein HUJ06_028092 [Nelumbo nucifera])

HSP 1 Score: 216.9 bits (551), Expect = 9.2e-53
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSL+EFW FY+NQHSKPSTRRWHFIGTL+A+ F +CS+LF+WWFLFFVP FGYGFAW
Sbjct: 1   MNFRSLEEFWPFYVNQHSKPSTRRWHFIGTLTALLFLICSILFNWWFLFFVPFFGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVE N+PA+FGHPFWSLLCDFKMFGLMLTG MDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEGNLPATFGHPFWSLLCDFKMFGLMLTGQMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. ExPASy TrEMBL
Match: A0A6J1CWL4 (uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015066 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.7e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. ExPASy TrEMBL
Match: A0A6J1I767 (uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.1e-59
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. ExPASy TrEMBL
Match: A0A6J1G2W8 (uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC111450283 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.1e-59
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. ExPASy TrEMBL
Match: A0A1S4DUQ8 (uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLF VPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPA+FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. ExPASy TrEMBL
Match: A0A5A7TMP5 (DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001060 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLF VPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPA+FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of MS016706 vs. TAIR 10
Match: AT3G09085.1 (Protein of unknown function (DUF962) )

HSP 1 Score: 177.6 bits (449), Expect = 5.7e-45
Identity = 81/110 (73.64%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60
           MNFRS +EFW FYM QHS PSTRR HFIG +++I   +CS+L +WWFL  VPL GYGFAW
Sbjct: 1   MNFRSFEEFWPFYMMQHSNPSTRRLHFIGIIASIVALICSILINWWFLALVPLLGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQ 111
           YSHFFVE NVPASFGHP WS LCD KMF LMLTG+M+RE+KRLGKRP+LQ
Sbjct: 61  YSHFFVEGNVPASFGHPLWSFLCDLKMFSLMLTGSMEREMKRLGKRPLLQ 110

The following BLAST results are available for this feature:

BLAST of MS016706 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145672.1	7.7e-60	100.00	uncharacterized protein LOC111015066 [Momordica charantia] >XP_022145673.1 uncha...	[more]
XP_022946132.1	1.5e-58	98.21	uncharacterized protein LOC111450283 [Cucurbita moschata] >XP_022946207.1 unchar...	[more]
XP_008442469.1	7.2e-58	97.32	PREDICTED: uncharacterized protein LOC103486326 [Cucumis melo] >XP_016899716.1 P...	[more]
XP_004137736.1	3.6e-57	95.54	uncharacterized protein LOC101216787 [Cucumis sativus] >KGN58796.1 hypothetical ...	[more]
XP_010256686.1	9.2e-53	86.61	PREDICTED: uncharacterized protein LOC104597016 [Nelumbo nucifera] >DAD26624.1 T...	[more]

BLAST of MS016706 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWL4	3.7e-60	100.00	uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1I767	7.1e-59	98.21	uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232...	[more]
A0A6J1G2W8	7.1e-59	98.21	uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]
A0A1S4DUQ8	3.5e-58	97.32	uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=...	[more]
A0A5A7TMP5	3.5e-58	97.32	DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of MS016706 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09085.1	5.7e-45	73.64	Protein of unknown function (DUF962)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009305	2-hydroxy-palmitic acid dioxygenase Mpo1-like	PFAM	PF06127	DUF962	coord: 3..96 e-value: 4.2E-28 score: 97.3
None	No IPR available	PANTHER	PTHR34205	TRANSMEMBRANE PROTEIN	coord: 3..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016706.1	MS016706.1	mRNA