MS016698 (gene) Bitter gourd (TR) v1

Overview


Name	MS016698
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein transport protein yos1-like
Location	scaffold563: 165033 .. 165263 (-)
RNA-Seq Expression	MS016698
Synteny	MS016698

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTGGAGCCTTCTGGAAGGGCTTTTGCTGTTTGCAAATGCGTTGGCAATTCTAAACGAAGATCGATTTCTCGGGCGGAGAGGATGGACATTGGCAGAGATGTCAAGAGACAGAAGAAACACGCTGAAAGGGCAGGTAATAGGGCTCATCCATGCATGCCAATTCCTCCGACTTCCCCTCATTCTTTTCAACATCATCATCATCGTAATCAAGCTTTTCTCTGGT

mRNA sequence

ATGGGATTCTGGAGCCTTCTGGAAGGGCTTTTGCTGTTTGCAAATGCGTTGGCAATTCTAAACGAAGATCGATTTCTCGGGCGGAGAGGATGGACATTGGCAGAGATGTCAAGAGACAGAAGAAACACGCTGAAAGGGCAGGTAATAGGGCTCATCCATGCATGCCAATTCCTCCGACTTCCCCTCATTCTTTTCAACATCATCATCATCGTAATCAAGCTTTTCTCTGGT

Coding sequence (CDS)

ATGGGATTCTGGAGCCTTCTGGAAGGGCTTTTGCTGTTTGCAAATGCGTTGGCAATTCTAAACGAAGATCGATTTCTCGGGCGGAGAGGATGGACATTGGCAGAGATGTCAAGAGACAGAAGAAACACGCTGAAAGGGCAGGTAATAGGGCTCATCCATGCATGCCAATTCCTCCGACTTCCCCTCATTCTTTTCAACATCATCATCATCGTAATCAAGCTTTTCTCTGGT

Protein sequence

MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRLPLILFNIIIIVIKLFSG

Homology

[Close]

BLAST of MS016698 vs. NCBI nr
Match: XP_022145757.1 (protein transport protein yos1-like [Momordica charantia] >XP_022145758.1 protein transport protein yos1-like [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 7.2e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
          MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIVIKLFSG 78
          PLILFNIIIIVIKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of MS016698 vs. NCBI nr
Match: XP_038906232.1 (protein transport protein yos1-like [Benincasa hispida] >XP_038906233.1 protein transport protein yos1-like [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
          MGFW+ LEGLLLFANA AILNEDRFL RRGWTLAEMSR+RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIVIKLFSG 78
          PLILFNIIII+IKLFSG
Sbjct: 61 PLILFNIIIIIIKLFSG 77

[Close]

BLAST of MS016698 vs. NCBI nr
Match: XP_022983483.1 (protein transport protein yos1-like [Cucurbita maxima] >XP_022983485.1 protein transport protein yos1-like [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
          MGFW+ LEGLLLFANA AILNEDRFL RRGWTLAEMSR RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLAEMSRGRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIVIKLFSG 78
          PLILFNIIIIVIKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of MS016698 vs. NCBI nr
Match: XP_022934956.1 (protein transport protein yos1-like [Cucurbita moschata] >XP_023527548.1 protein transport protein yos1-like [Cucurbita pepo subsp. pepo] >XP_023527549.1 protein transport protein yos1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 71/77 (92.21%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
          MGFW+ LEGLLLFANA AILNEDRFL RRGWTL EMSR RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLGEMSRGRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIVIKLFSG 78
          PLILFNIIIIVIKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of MS016698 vs. NCBI nr
Match: AES87019.1 (Yos1-like protein [Medicago truncatula])

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
           MGFW+LLEGLLLFANALAILNEDRFL RRGWTLAEM+  RRN+LKGQVIGLI+ACQFLRL
Sbjct: 116 MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGPRRNSLKGQVIGLIYACQFLRL 175

Query: 61  PLILFNIIIIVIKLFSG 78
           PLILFNIIII++KLFSG
Sbjct: 176 PLILFNIIIIIVKLFSG 192

[Close]

BLAST of MS016698 vs. ExPASy Swiss-Prot
Match: O13825 (Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=yos1 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-07
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 2  GFWSLLEGLLLFANALAILNEDRFLGRRGW--TLAEMSRDRRNTLKGQVIGLIHACQ-FL 61
          GF ++L   LL  NA+AIL+EDRFLGR GW  + A    DR++T+K +++ LI A +  +
Sbjct: 3  GFGNILYVTLLLLNAVAILSEDRFLGRIGWSQSAALGFGDRQDTIKSRILHLIRAIRTVM 62

Query: 62 RLPLILFNIIIIVIKLFSG 78
            PLI  N I+IV  L  G
Sbjct: 63 TFPLIAINTIVIVYNLVLG 81

[Close]

BLAST of MS016698 vs. ExPASy Swiss-Prot
Match: Q3E834 (Protein transport protein YOS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YOS1 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.6e-04
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 2  GFWSLLEGLLLFANALAILNEDRFLGRRGWTLAE----MSRDRRNTLKGQVIGLIHACQ- 61
          G   L   +LL  NA+A+L+E+RFL R G   +     +    +NT K +V+ LI A Q 
Sbjct: 5  GLGRLFYVILLLINAVAVLSEERFLRRIGLGRSNDETPVFGQDQNTTKSKVVQLIGAVQT 64

Query: 62 FLRLPLILFNIIIIVIKLFSG 78
           LR+PLI  NI++IV +L  G
Sbjct: 65 LLRIPLIGINILVIVYELLLG 85

[Close]

BLAST of MS016698 vs. ExPASy TrEMBL
Match: A0A6J1CWU4 (protein transport protein yos1-like OS=Momordica charantia OX=3673 GN=LOC111015136 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.5e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
          MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIVIKLFSG 78
          PLILFNIIIIVIKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of MS016698 vs. ExPASy TrEMBL
Match: A0A6J1J7W2 (protein transport protein yos1-like OS=Cucurbita maxima OX=3661 GN=LOC111482074 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
          MGFW+ LEGLLLFANA AILNEDRFL RRGWTLAEMSR RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLAEMSRGRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIVIKLFSG 78
          PLILFNIIIIVIKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of MS016698 vs. ExPASy TrEMBL
Match: A0A6J1F388 (protein transport protein yos1-like OS=Cucurbita moschata OX=3662 GN=LOC111441969 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.2e-30
Identity = 71/77 (92.21%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
          MGFW+ LEGLLLFANA AILNEDRFL RRGWTL EMSR RRNTLKGQVIGLIHACQFLRL
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLGEMSRGRRNTLKGQVIGLIHACQFLRL 60

Query: 61 PLILFNIIIIVIKLFSG 78
          PLILFNIIIIVIKLFSG
Sbjct: 61 PLILFNIIIIVIKLFSG 77

[Close]

BLAST of MS016698 vs. ExPASy TrEMBL
Match: G7JRA6 (Yos1-like protein OS=Medicago truncatula OX=3880 GN=MTR_4g019160 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.9e-29
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
           MGFW+LLEGLLLFANALAILNEDRFL RRGWTLAEM+  RRN+LKGQVIGLI+ACQFLRL
Sbjct: 116 MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGPRRNSLKGQVIGLIYACQFLRL 175

Query: 61  PLILFNIIIIVIKLFSG 78
           PLILFNIIII++KLFSG
Sbjct: 176 PLILFNIIIIIVKLFSG 192

[Close]

BLAST of MS016698 vs. ExPASy TrEMBL
Match: A0A396I2K2 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0008431 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.9e-29
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSRDRRNTLKGQVIGLIHACQFLRL 60
          MGFW+LLEGLLLFANALAILNEDRFL RRGWTLAEM+  RRN+LKGQVIGLI+ACQFLRL
Sbjct: 1  MGFWTLLEGLLLFANALAILNEDRFLARRGWTLAEMTGPRRNSLKGQVIGLIYACQFLRL 60

Query: 61 PLILFNIIIIVIKLFSG 78
          PLILFNIIII++KLFSG
Sbjct: 61 PLILFNIIIIIVKLFSG 77

[Close]

BLAST of MS016698 vs. TAIR 10
Match: AT2G37975.1 (Yos1-like protein )

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSR-DRRNTLKGQVIGLIHACQFLR 60
          MGFW+L+EGLLLFANALAILNEDRFL  +GWTLAE+ +  +RN+LKGQ+IGLIHAC ++R
Sbjct: 1  MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQIIGLIHACHYMR 60

Query: 61 LPLILFNIIIIVIKLFSG 78
          LPL+LFN+I+IV KLFSG
Sbjct: 61 LPLMLFNLIVIVFKLFSG 78

[Close]

BLAST of MS016698 vs. TAIR 10
Match: AT3G54085.1 (Yos1-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 9.1e-26
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSR-DRRNTLKGQVIGLIHACQFLR 60
          MGFW+LL+GLLLFANALAILNEDRFL  RGWTL E+ + DRRN+ KGQ+IGLIHACQ++R
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 61 LPLILFNIIIIVIKLFSG 78
          LPL+L N  +IV+KL SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

[Close]

BLAST of MS016698 vs. TAIR 10
Match: AT3G54085.2 (Yos1-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 9.1e-26
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1  MGFWSLLEGLLLFANALAILNEDRFLGRRGWTLAEMSR-DRRNTLKGQVIGLIHACQFLR 60
          MGFW+LL+GLLLFANALAILNEDRFL  RGWTL E+ + DRRN+ KGQ+IGLIHACQ++R
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQIIGLIHACQYMR 60

Query: 61 LPLILFNIIIIVIKLFSG 78
          LPL+L N  +IV+KL SG
Sbjct: 61 LPLMLINTAVIVLKLISG 78

The following BLAST results are available for this feature:

BLAST of MS016698 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145757.1	7.2e-33	100.00	protein transport protein yos1-like [Momordica charantia] >XP_022145758.1 protei...	[more]
XP_038906232.1	2.6e-30	92.21	protein transport protein yos1-like [Benincasa hispida] >XP_038906233.1 protein ...	[more]
XP_022983483.1	4.4e-30	93.51	protein transport protein yos1-like [Cucurbita maxima] >XP_022983485.1 protein t...	[more]
XP_022934956.1	1.3e-29	92.21	protein transport protein yos1-like [Cucurbita moschata] >XP_023527548.1 protein...	[more]
AES87019.1	1.8e-28	88.31	Yos1-like protein [Medicago truncatula]	[more]

BLAST of MS016698 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13825	4.2e-07	45.57	Protein transport protein yos1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q3E834	9.6e-04	40.74	Protein transport protein YOS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]

BLAST of MS016698 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWU4	3.5e-33	100.00	protein transport protein yos1-like OS=Momordica charantia OX=3673 GN=LOC1110151...	[more]
A0A6J1J7W2	2.1e-30	93.51	protein transport protein yos1-like OS=Cucurbita maxima OX=3661 GN=LOC111482074 ...	[more]
A0A6J1F388	6.2e-30	92.21	protein transport protein yos1-like OS=Cucurbita moschata OX=3662 GN=LOC11144196...	[more]
G7JRA6	8.9e-29	88.31	Yos1-like protein OS=Medicago truncatula OX=3880 GN=MTR_4g019160 PE=3 SV=1	[more]
A0A396I2K2	8.9e-29	88.31	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0008431 ...	[more]

BLAST of MS016698 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37975.1	1.3e-27	74.36	Yos1-like protein	[more]
AT3G54085.1	9.1e-26	73.08	Yos1-like protein	[more]
AT3G54085.2	9.1e-26	73.08	Yos1-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013880	Yos1-like	PFAM	PF08571	Yos1	coord: 3..77 e-value: 5.2E-23 score: 81.1
IPR013880	Yos1-like	PANTHER	PTHR15858	UNCHARACTERIZED	coord: 1..77
None	No IPR available	PANTHER	PTHR15858:SF2	YOS1-LIKE PROTEIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016698.1	MS016698.1	mRNA