MS016691 (gene) Bitter gourd (TR) v1

Overview
NameMS016691
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear transport factor 2 (NTF2) family protein
Locationscaffold563: 124616 .. 125804 (-)
RNA-Seq ExpressionMS016691
SyntenyMS016691
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTCCATACATCTAATTTGTGCTGCAATGTGAGCAGTGCTTCTCTTCTTTGATTCTCTGATGCCGCTCCTATCAATTTACTTTGTTGTTCTCTTCGTATCTTTTTCACTACTGCTATGACCAGTGGATTAGTTGCTGTTATGGATTGATATGCGTTCTTCATTGTCGTAAATTGTTTCCCGGTTTAATTTTTCTTAGATAAGCTTCTTTATCTGGACGTCAATTTTGAAGTATTTCAGTGATATTGTAATTTTGCAGGGTTATGTTACCCTTATCGGCAACCGGACGAGCGTGCGCCGTTCCCATAGTTATGATATTGGCTTGGTTAGAGCGTCTAGAGGAGGATGCGGATTTCGTTTTCCCTCTAGTCTTCGTCACGTCAGTTCATGGAATGGAAATTTCAGTAAGTTTTTCCTTAATTTCTTCAATTTTCATGAGCGTTTGACTAAATTTGTTTGAGCTTTTATTACTTTTATGAAATCTGAACTTTCTAGCCAGTGCAATGGAATAATGGATGTTAATATAAATATGGATAGATAGATACAGATATACACAGAGTTACGTATAATTTCACTTTGCTTCCAATTTCTTTAGTAAATCAGCATTTTGTTAATATCTAGTGCAGGGCCCTGCAAACAGACTTCTAGGATGCTATCATTTCGACCTTGCCAACTGAAAGGCGAGAACTCGAGTGGCGAAAGCACTACACTTGATGCAGAAACTTTGGAGCAGGACCTACAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAATCTTCAGTACTGGCAGCCAATGCTAAGTTTTACGAAGCGTTTCGGACCGGTGATCTTGCTGCCATGCAAGCTCTCTGGGCACGAGGAGATAGTGTGTGCTGCGTGCACCCGGGTGCGAGGGGGATATCTGGGTATGACGATGTCATGATCAGCTGGGAGTATGTATGGGCAAACTATGAGTTCCCACTAGAGATTCAACTTAAGGAAATTCAAGTTCATGCCAAAGGGGATGTGGGTTATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTG

mRNA sequence

ATGGCGCTCCATACATCTAATTTGTGCTGCAATGGTTATGTTACCCTTATCGGCAACCGGACGAGCGTGCGCCGTTCCCATAGTTATGATATTGGCTTGGTTAGAGCGTCTAGAGGAGGATGCGGATTTCGTTTTCCCTCTAGTCTTCGTCACGTCAGTTCATGGAATGGAAATTTCAGGCCCTGCAAACAGACTTCTAGGATGCTATCATTTCGACCTTGCCAACTGAAAGGCGAGAACTCGAGTGGCGAAAGCACTACACTTGATGCAGAAACTTTGGAGCAGGACCTACAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAATCTTCAGTACTGGCAGCCAATGCTAAGTTTTACGAAGCGTTTCGGACCGGTGATCTTGCTGCCATGCAAGCTCTCTGGGCACGAGGAGATAGTGTGTGCTGCGTGCACCCGGGTGCGAGGGGGATATCTGGGTATGACGATGTCATGATCAGCTGGGAGTATGTATGGGCAAACTATGAGTTCCCACTAGAGATTCAACTTAAGGAAATTCAAGTTCATGCCAAAGGGGATGTGGGTTATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTG

Coding sequence (CDS)

ATGGCGCTCCATACATCTAATTTGTGCTGCAATGGTTATGTTACCCTTATCGGCAACCGGACGAGCGTGCGCCGTTCCCATAGTTATGATATTGGCTTGGTTAGAGCGTCTAGAGGAGGATGCGGATTTCGTTTTCCCTCTAGTCTTCGTCACGTCAGTTCATGGAATGGAAATTTCAGGCCCTGCAAACAGACTTCTAGGATGCTATCATTTCGACCTTGCCAACTGAAAGGCGAGAACTCGAGTGGCGAAAGCACTACACTTGATGCAGAAACTTTGGAGCAGGACCTACAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCACAAATCAGAGATACCTTGAAAGCTCTTCAAGAGGATAGCAAATCTTCAGTACTGGCAGCCAATGCTAAGTTTTACGAAGCGTTTCGGACCGGTGATCTTGCTGCCATGCAAGCTCTCTGGGCACGAGGAGATAGTGTGTGCTGCGTGCACCCGGGTGCGAGGGGGATATCTGGGTATGACGATGTCATGATCAGCTGGGAGTATGTATGGGCAAACTATGAGTTCCCACTAGAGATTCAACTTAAGGAAATTCAAGTTCATGCCAAAGGGGATGTGGGTTATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAATGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTG

Protein sequence

MALHTSNLCCNGYVTLIGNRTSVRRSHSYDIGLVRASRGGCGFRFPSSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDYARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHASPIDL
Homology
BLAST of MS016691 vs. NCBI nr
Match: XP_022145523.1 (uncharacterized protein LOC111014953 [Momordica charantia])

HSP 1 Score: 509.6 bits (1311), Expect = 1.5e-140
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSYDIGLVRASRGGCGFRFPSSLRHVSSWNGNFR 60
           MALHTSNLCCNGYVTLIGNRTSVRRSHSYDIGLVRASRGGCGFRFPSSLRHVSSWNGNFR
Sbjct: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSYDIGLVRASRGGCGFRFPSSLRHVSSWNGNFR 60

Query: 61  PCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDYARAAQIRDTLKALQ 120
           PCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDYARAAQIRDTLKALQ
Sbjct: 61  PCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDYARAAQIRDTLKALQ 120

Query: 121 EDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVW 180
           EDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVW
Sbjct: 121 EDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVW 180

Query: 181 ANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHH 240
           ANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHH
Sbjct: 181 ANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHH 240

Query: 241 ASPIDL 247
           ASPIDL
Sbjct: 241 ASPIDL 246

BLAST of MS016691 vs. NCBI nr
Match: XP_038904182.1 (uncharacterized protein LOC120090530 [Benincasa hispida] >XP_038904693.1 uncharacterized protein LOC120091000 [Benincasa hispida])

HSP 1 Score: 429.5 bits (1103), Expect = 2.0e-116
Identity = 210/260 (80.77%), Postives = 228/260 (87.69%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSY--------------DIGLVRASRGGCGFRFP 60
           MALHTSNLCCN +VT I NR SVR   ++              +IGLV++ RGGCGF FP
Sbjct: 1   MALHTSNLCCNDHVTFICNRKSVRCLQNFAVFHHLPSALPKQCEIGLVKSCRGGCGFLFP 60

Query: 61  SSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDY 120
           SSLR+V+S NGNFRP KQTSR LSFRPCQLK ENSSGES TLDAETLEQDLQNAIADEDY
Sbjct: 61  SSLRYVASRNGNFRPWKQTSRTLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDY 120

Query: 121 ARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGI 180
           ARAAQIRDTLKALQEDSK+SVLAANAKFY++F+TGDLA MQ LWARGDSVCCVHPG RGI
Sbjct: 121 ARAAQIRDTLKALQEDSKTSVLAANAKFYKSFQTGDLATMQTLWARGDSVCCVHPGMRGI 180

Query: 181 SGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGY+DV+ SWEYVWANYEFPLEIQLK++QVHA+GDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYNDVITSWEYVWANYEFPLEIQLKDVQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 247
           FERINGQWF+CIHHASPIDL
Sbjct: 241 FERINGQWFVCIHHASPIDL 260

BLAST of MS016691 vs. NCBI nr
Match: XP_023539336.1 (uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427.9 bits (1099), Expect = 5.7e-116
Identity = 210/260 (80.77%), Postives = 225/260 (86.54%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHS--------------YDIGLVRASRGGCGFRFP 60
           MALHTS+LCCNGYVT I NR SVR S S              YDIGLV+AS GGCGF FP
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPSARPKQYDIGLVKASTGGCGFLFP 67

Query: 61  SSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDY 120
           S  R + S  GNFRPCK ++RMLSFRPCQLK ENSSGES TLDAETL+QDLQNAIADEDY
Sbjct: 68  SIPRCLGSTIGNFRPCKLSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127

Query: 121 ARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGI 180
           ARAA+IRDTLKALQEDSK+SV AANAKFYE+FR GDLAAMQ LWARGDSVCCVHPG RGI
Sbjct: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187

Query: 181 SGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYD+V+ SWEYVWANYEFPLEIQLK+++VHA+GDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247

Query: 241 FERINGQWFICIHHASPIDL 247
           FERINGQWFICIHHASPIDL
Sbjct: 248 FERINGQWFICIHHASPIDL 267

BLAST of MS016691 vs. NCBI nr
Match: XP_004137747.1 (uncharacterized protein LOC101219393 [Cucumis sativus] >KGN58815.1 hypothetical protein Csa_001436 [Cucumis sativus])

HSP 1 Score: 423.3 bits (1087), Expect = 1.4e-114
Identity = 209/260 (80.38%), Postives = 221/260 (85.00%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSY--------------DIGLVRASRGGCGFRFP 60
           MALHT NLCCN YVT I +R SVR S S+              +I LV +S GG GF  P
Sbjct: 1   MALHTFNLCCNDYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLP 60

Query: 61  SSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDY 120
           S+ RHV S NGNFRPCKQ SR LSFRPCQLK ENSSGES TLDAETLEQDLQNAIADEDY
Sbjct: 61  SNFRHVGSRNGNFRPCKQASRKLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDY 120

Query: 121 ARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGI 180
           ARAA+IRDTLKALQEDSK+ VL ANAKFYE+FRTGDLAAMQ LWARG+SVCCVHPG RGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 181 SGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYDDV+ SWEYVWANYEFPLEIQLK+IQVHA+GDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 247
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of MS016691 vs. NCBI nr
Match: KAG6596375.1 (F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 422.2 bits (1084), Expect = 3.2e-114
Identity = 209/260 (80.38%), Postives = 224/260 (86.15%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHS--------------YDIGLVRASRGGCGFRFP 60
           MALHTS+LCCNGYVT I NR SVR S S              YDIGLV+AS GG GF  P
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFHHVPLALPKQYDIGLVKASIGGYGFVSP 67

Query: 61  SSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDY 120
           S  R + S  GNFRPCKQ++RMLSFRPCQLK ENSSGES TLDAETL+QDLQNAIADEDY
Sbjct: 68  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 127

Query: 121 ARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGI 180
           ARAA+IRDTLKALQEDSK+SV AANAKFYE+FR GDLAAMQ LWARGDSVCCVHPG RGI
Sbjct: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187

Query: 181 SGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYD+V+ SWEYVWANYEFPLEIQLK+++VHA+GDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247

Query: 241 FERINGQWFICIHHASPIDL 247
           FERINGQWFICIHHASPIDL
Sbjct: 248 FERINGQWFICIHHASPIDL 267

BLAST of MS016691 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-12
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 126 SVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVWANYEF 185
           ++++ N +F+   R   L AM  LW   D V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 186 PLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 243
             + Q+  ++     D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of MS016691 vs. ExPASy TrEMBL
Match: A0A6J1CW63 (uncharacterized protein LOC111014953 OS=Momordica charantia OX=3673 GN=LOC111014953 PE=4 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 7.3e-141
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSYDIGLVRASRGGCGFRFPSSLRHVSSWNGNFR 60
           MALHTSNLCCNGYVTLIGNRTSVRRSHSYDIGLVRASRGGCGFRFPSSLRHVSSWNGNFR
Sbjct: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSYDIGLVRASRGGCGFRFPSSLRHVSSWNGNFR 60

Query: 61  PCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDYARAAQIRDTLKALQ 120
           PCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDYARAAQIRDTLKALQ
Sbjct: 61  PCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDYARAAQIRDTLKALQ 120

Query: 121 EDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVW 180
           EDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVW
Sbjct: 121 EDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVW 180

Query: 181 ANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHH 240
           ANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHH
Sbjct: 181 ANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHH 240

Query: 241 ASPIDL 247
           ASPIDL
Sbjct: 241 ASPIDL 246

BLAST of MS016691 vs. ExPASy TrEMBL
Match: A0A0A0LA11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.8e-115
Identity = 209/260 (80.38%), Postives = 221/260 (85.00%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSY--------------DIGLVRASRGGCGFRFP 60
           MALHT NLCCN YVT I +R SVR S S+              +I LV +S GG GF  P
Sbjct: 1   MALHTFNLCCNDYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLP 60

Query: 61  SSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDY 120
           S+ RHV S NGNFRPCKQ SR LSFRPCQLK ENSSGES TLDAETLEQDLQNAIADEDY
Sbjct: 61  SNFRHVGSRNGNFRPCKQASRKLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDY 120

Query: 121 ARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGI 180
           ARAA+IRDTLKALQEDSK+ VL ANAKFYE+FRTGDLAAMQ LWARG+SVCCVHPG RGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 181 SGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYDDV+ SWEYVWANYEFPLEIQLK+IQVHA+GDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 247
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of MS016691 vs. ExPASy TrEMBL
Match: A0A6J1FUV2 (uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC111447066 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.6e-114
Identity = 209/260 (80.38%), Postives = 223/260 (85.77%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHS--------------YDIGLVRASRGGCGFRFP 60
           MALHTS+LCCNGYVT I NR SVR S S              YDIGLV+AS GG GF  P
Sbjct: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIGGYGFVSP 67

Query: 61  SSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDY 120
           S  R + S  GNFRPCKQ+SRMLSFRPCQLK ENSSGES TLDAE L+QDLQNAIADEDY
Sbjct: 68  SIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADEDY 127

Query: 121 ARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGI 180
           ARAA+IRDTLKALQEDSK+SV AANAKFYE+FR GDLAAMQ LWARGDSVCCVHPG RGI
Sbjct: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187

Query: 181 SGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYD+V+ SWEYVWANYEFPLEIQLK+++VHA+GDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247

Query: 241 FERINGQWFICIHHASPIDL 247
           FERINGQWFICIHHASPIDL
Sbjct: 248 FERINGQWFICIHHASPIDL 267

BLAST of MS016691 vs. ExPASy TrEMBL
Match: A0A6J1I6J4 (uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.4e-114
Identity = 207/260 (79.62%), Postives = 222/260 (85.38%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHS--------------YDIGLVRASRGGCGFRFP 60
           MALHTS+LCCNGYVT I NR +VR S S              YDIG V+ S GG GF FP
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 61  SSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDY 120
           S  R + S  GNFRPCKQ++RMLSFRPCQLK ENSSGES TLDAETL+QDLQNAIADEDY
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 120

Query: 121 ARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGI 180
           ARAA+IRDTLKALQEDSK+SV AANAKFYE+FR GDLAAMQ LWARGDSVCCVHPG RGI
Sbjct: 121 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 180

Query: 181 SGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNV 240
            GYD+VM SWEYVWANYEFPLEIQLK+++VHA+GDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 LGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 247
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of MS016691 vs. ExPASy TrEMBL
Match: A0A5A7TRW4 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004880 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 6.0e-111
Identity = 204/260 (78.46%), Postives = 220/260 (84.62%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSY--------------DIGLVRASRGGCGFRFP 60
           MAL TSNLCCN YVT I N  SVR S S+              +I LV++S GG GF  P
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 61  SSLRHVSSWNGNFRPCKQTSRMLSFRPCQLKGENSSGESTTLDAETLEQDLQNAIADEDY 120
           ++LRHV S +GNFRPCKQ SR LSF P QLK ENSSGES TLDAETLEQDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 121 ARAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGI 180
           ARAA+IRDTLKALQEDSK+ VL ANAKFYE+FRTGDLAAMQ LWARG+SVCCVHPG RGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 181 SGYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNV 240
           SGYDDV+ SWEYVWANYEFPLEIQLK++QVHA+GDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 241 FERINGQWFICIHHASPIDL 247
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

BLAST of MS016691 vs. TAIR 10
Match: AT3G09250.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-67
Identity = 130/260 (50.00%), Postives = 175/260 (67.31%), Query Frame = 0

Query: 1   MALHTSNLCCNGYVTLIGNRTSVRRSHSYDIGLVRASRGGCGFRFPSSLRHVSSWN---- 60
           MALH S + C      + N   +       + L+   +      +P     VS+ N    
Sbjct: 1   MALHGSGVFCK-----VSNMVEITSPFGGSMRLLHLPKS-----YPIHCNMVSASNTFGS 60

Query: 61  -----GNFRPCKQTSRMLSFRPCQLKGENSSG----ESTTLDAETLEQDLQNAIADEDYA 120
                 N  PC +       RPC++K E ++     ES ++D  TL+QDL+ A+ +E+Y 
Sbjct: 61  AHLKLQNKEPCSR------LRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYV 120

Query: 121 RAAQIRDTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGIS 180
            AA+IRD LK LQED+K+SVL+AN++FY++FR GDLAAMQ+LW++  + CCVHPGA+GI+
Sbjct: 121 EAAKIRDKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGIT 180

Query: 181 GYDDVMISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKG-SSWGGQFVTNV 240
           GYD VM SWE VW NYEFPL I+LK+++VH +G+VGYVTC+E VKTKG SSWG QFV+NV
Sbjct: 181 GYDYVMESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNV 240

Query: 241 FERINGQWFICIHHASPIDL 247
           FERI+GQWFICIHHASP+D+
Sbjct: 241 FERIDGQWFICIHHASPVDI 244

BLAST of MS016691 vs. TAIR 10
Match: AT3G09250.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-59
Identity = 108/182 (59.34%), Postives = 143/182 (78.57%), Query Frame = 0

Query: 58  NFRPCKQTSRMLSFRPCQLKGENSSG----ESTTLDAETLEQDLQNAIADEDYARAAQIR 117
           N  PC +       RPC++K E ++     ES ++D  TL+QDL+ A+ +E+Y  AA+IR
Sbjct: 43  NKEPCSR------LRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIR 102

Query: 118 DTLKALQEDSKSSVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVM 177
           D LK LQED+K+SVL+AN++FY++FR GDLAAMQ+LW++  + CCVHPGA+GI+GYD VM
Sbjct: 103 DKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVM 162

Query: 178 ISWEYVWANYEFPLEIQLKEIQVHAKGDVGYVTCVELVKTKG-SSWGGQFVTNVFERING 235
            SWE VW NYEFPL I+LK+++VH +G+VGYVTC+E VKTKG SSWG QFV+NVFERI+G
Sbjct: 163 ESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDG 218

BLAST of MS016691 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-13
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 126 SVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVWANYEF 185
           ++++ N +F+   R   L AM  LW   D V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 186 PLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 243
             + Q+  ++     D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of MS016691 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-13
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 126 SVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVWANYEF 185
           ++++ N +F+   R   L AM  LW   D V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 186 PLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 243
             + Q+  ++     D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

BLAST of MS016691 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-13
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 126 SVLAANAKFYEAFRTGDLAAMQALWARGDSVCCVHPGARGISGYDDVMISWEYVWANYEF 185
           ++++ N +F+   R   L AM  LW   D V C+H      SGY++V+ SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 186 PLEIQLKEIQVHAKGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 243
             + Q+  ++     D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145523.11.5e-140100.00uncharacterized protein LOC111014953 [Momordica charantia][more]
XP_038904182.12.0e-11680.77uncharacterized protein LOC120090530 [Benincasa hispida] >XP_038904693.1 unchara... [more]
XP_023539336.15.7e-11680.77uncharacterized protein LOC111799999 [Cucurbita pepo subsp. pepo][more]
XP_004137747.11.4e-11480.38uncharacterized protein LOC101219393 [Cucumis sativus] >KGN58815.1 hypothetical ... [more]
KAG6596375.13.2e-11480.38F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Q93YV93.6e-1231.62F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1CW637.3e-141100.00uncharacterized protein LOC111014953 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A0A0LA116.8e-11580.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1[more]
A0A6J1FUV22.6e-11480.38uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC1114470... [more]
A0A6J1I6J43.4e-11479.62uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086... [more]
A0A5A7TRW46.0e-11178.46F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G... [more]
Match NameE-valueIdentityDescription
AT3G09250.11.1e-6750.00Nuclear transport factor 2 (NTF2) family protein [more]
AT3G09250.21.1e-5959.34Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.12.6e-1331.62Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.22.6e-1331.62Nuclear transport factor 2 (NTF2) family protein [more]
AT4G10925.32.6e-1331.62Nuclear transport factor 2 (NTF2) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001943UVR domainPFAMPF02151UVRcoord: 91..121
e-value: 1.0E-6
score: 28.2
IPR001943UVR domainPROSITEPS50151UVRcoord: 87..122
score: 8.313559
IPR037401SnoaL-like domainPFAMPF13474SnoaL_3coord: 127..243
e-value: 1.6E-25
score: 89.8
NoneNo IPR availableGENE3D3.10.450.50coord: 116..245
e-value: 5.5E-42
score: 145.2
NoneNo IPR availablePANTHERPTHR34957NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEINcoord: 49..245
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 123..244

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016691.1MS016691.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding