MS016688 (gene) Bitter gourd (TR) v1

Overview


Name	MS016688
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Copper transporter
Location	scaffold563: 114483 .. 114920 (-)
RNA-Seq Expression	MS016688
Synteny	MS016688

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTGAAACTGAAAGCGACGTCTCGTCATAACCTCGGCACCGTCCCGCCGCCGGCGACGGAAACGAACAATGCCGGGAAGACGGTGGTGCATAAGTCTCTGTACTGGAGCCACGACGCCCAAGTCCTGTTCACCGGGTGGCCCGGTGCGGACTCGGCCATGTACGCACTGGCGGTGATTTTCGTCTTCGTTCTGGCCGTCCTCGTCGAATGGCTCACTTACTGCAACTTCATGAAGCAGAGCGCCGAGAGTGTCTCGACGGCGGTGCTGCAGACGGCGATACACGCGGTGCGCACGGGGTTGAGTTACATGGTGATGCTATCCGTCATGTCGTTCAACGGCGGGATCTTCCTGGCCGCGGTCGGTGGCCACGCTGTGGGCTTCGTTCTGTTCAGAGCCCGTGCCAAAAGAAAGAGCGAATCAGATTCCACCAAA

mRNA sequence

ATGACTCTGAAACTGAAAGCGACGTCTCGTCATAACCTCGGCACCGTCCCGCCGCCGGCGACGGAAACGAACAATGCCGGGAAGACGGTGGTGCATAAGTCTCTGTACTGGAGCCACGACGCCCAAGTCCTGTTCACCGGGTGGCCCGGTGCGGACTCGGCCATGTACGCACTGGCGGTGATTTTCGTCTTCGTTCTGGCCGTCCTCGTCGAATGGCTCACTTACTGCAACTTCATGAAGCAGAGCGCCGAGAGTGTCTCGACGGCGGTGCTGCAGACGGCGATACACGCGGTGCGCACGGGGTTGAGTTACATGGTGATGCTATCCGTCATGTCGTTCAACGGCGGGATCTTCCTGGCCGCGGTCGGTGGCCACGCTGTGGGCTTCGTTCTGTTCAGAGCCCGTGCCAAAAGAAAGAGCGAATCAGATTCCACCAAA

Coding sequence (CDS)

ATGACTCTGAAACTGAAAGCGACGTCTCGTCATAACCTCGGCACCGTCCCGCCGCCGGCGACGGAAACGAACAATGCCGGGAAGACGGTGGTGCATAAGTCTCTGTACTGGAGCCACGACGCCCAAGTCCTGTTCACCGGGTGGCCCGGTGCGGACTCGGCCATGTACGCACTGGCGGTGATTTTCGTCTTCGTTCTGGCCGTCCTCGTCGAATGGCTCACTTACTGCAACTTCATGAAGCAGAGCGCCGAGAGTGTCTCGACGGCGGTGCTGCAGACGGCGATACACGCGGTGCGCACGGGGTTGAGTTACATGGTGATGCTATCCGTCATGTCGTTCAACGGCGGGATCTTCCTGGCCGCGGTCGGTGGCCACGCTGTGGGCTTCGTTCTGTTCAGAGCCCGTGCCAAAAGAAAGAGCGAATCAGATTCCACCAAA

Protein sequence

MTLKLKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKSESDSTK

Homology

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BLAST of MS016688 vs. NCBI nr
Match: XP_022145715.1 (copper transporter 4 [Momordica charantia])

HSP 1 Score: 282.0 bits (720), Expect = 3.0e-72
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLKLKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAV 60
           MTLKLKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAV
Sbjct: 9   MTLKLKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAV 68

Query: 61  IFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLA 120
           IFVFVLAVLVEWLTYCNFMKQSAESVS AVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLA
Sbjct: 69  IFVFVLAVLVEWLTYCNFMKQSAESVSKAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLA 128

Query: 121 AVGGHAVGFVLFRARAKRKSESDSTK 147
           AVGGHAVGFVLFRARAKRKSESDSTK
Sbjct: 129 AVGGHAVGFVLFRARAKRKSESDSTK 154

[Close]

BLAST of MS016688 vs. NCBI nr
Match: XP_023540707.1 (copper transporter 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.4 bits (607), Expect = 3.8e-59
Identity = 123/149 (82.55%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 3   LKLKATSRHNLGTVPPPATE-----TNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYA 62
           + LK TS HNLG VPPPA E     TNNAGKTVVHK+LYW HDAQVLFTGWPG +SAMYA
Sbjct: 2   MALKTTSHHNLGAVPPPAVETNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA 61

Query: 63  LAVIFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGI 122
           LAVIFVFVLAV VEWLTY NFMKQSA++V T VLQTAIHAVRTGL+YMV+LSVMSFNGGI
Sbjct: 62  LAVIFVFVLAVFVEWLTYLNFMKQSADNVLTVVLQTAIHAVRTGLNYMVILSVMSFNGGI 121

Query: 123 FLAAVGGHAVGFVLFRARAKRKSESDSTK 147
           FLAAVGGHAVGFVLFRAR KRK+ESDS K
Sbjct: 122 FLAAVGGHAVGFVLFRARVKRKAESDSPK 150

[Close]

BLAST of MS016688 vs. NCBI nr
Match: KAG7027927.1 (Copper transporter 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 8.5e-59
Identity = 122/149 (81.88%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 3   LKLKATSRHNLGTVPPPATE-----TNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYA 62
           + LK TS HNLG VPPPA E     TNNAGKTVVHK+LYW HDAQVLFTGWPG +SAMYA
Sbjct: 1   MALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA 60

Query: 63  LAVIFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGI 122
           LAVIFVFVLAV VEWLTY NFMK+SA++V T VLQTAIH VRTGL+YMV+LSVMSFNGGI
Sbjct: 61  LAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGI 120

Query: 123 FLAAVGGHAVGFVLFRARAKRKSESDSTK 147
           FLAAVGGHAVGFVLFRARAKRK+ESDS K
Sbjct: 121 FLAAVGGHAVGFVLFRARAKRKAESDSPK 149

[Close]

BLAST of MS016688 vs. NCBI nr
Match: KAG6596378.1 (Copper transporter 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 237.3 bits (604), Expect = 8.5e-59
Identity = 122/149 (81.88%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 3   LKLKATSRHNLGTVPPPATE-----TNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYA 62
           + LK TS HNLG VPPPA E     TNNAGKTVVHK+LYW HDAQVLFTGWPG +SAMYA
Sbjct: 2   MALKTTSHHNLGAVPPPAVESNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA 61

Query: 63  LAVIFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGI 122
           LAVIFVFVLAV VEWLTY NFMK+SA++V T VLQTAIH VRTGL+YMV+LSVMSFNGGI
Sbjct: 62  LAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHTVRTGLNYMVILSVMSFNGGI 121

Query: 123 FLAAVGGHAVGFVLFRARAKRKSESDSTK 147
           FLAAVGGHAVGFVLFRARAKRK+ESDS K
Sbjct: 122 FLAAVGGHAVGFVLFRARAKRKAESDSPK 150

[Close]

BLAST of MS016688 vs. NCBI nr
Match: XP_022971334.1 (copper transporter 6-like [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 122/149 (81.88%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 3   LKLKATSRHNLGTVPPPATE-----TNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYA 62
           + LK TS HNLG VPPPA E     TNNAGKTVVHK+LYW HDAQVLFTGWPG +SAMYA
Sbjct: 81  MALKTTSHHNLGGVPPPAVESNPANTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA 140

Query: 63  LAVIFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGI 122
           LAVIFVFVLAV VEWLTY NFMKQSA++V T VLQ+AIHAVRTGL YMVMLSVMSFNGGI
Sbjct: 141 LAVIFVFVLAVFVEWLTYLNFMKQSADNVLTVVLQSAIHAVRTGLKYMVMLSVMSFNGGI 200

Query: 123 FLAAVGGHAVGFVLFRARAKRKSESDSTK 147
           FLAAVGGHAVGFVLFR RA+RK+ESDS K
Sbjct: 201 FLAAVGGHAVGFVLFRGRAERKAESDSPK 229

[Close]

BLAST of MS016688 vs. ExPASy Swiss-Prot
Match: Q8SAA5 (Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 3.6e-28
Identity = 59/116 (50.86%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 29  TVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVLVEWLTYC---NFMKQSAES 88
           +++H + YW ++ QVLF+GWPG+D  MYALA+IFVF LA L EWL  C   + +KQ A+ 
Sbjct: 28  SLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADK 87

Query: 89  VSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKSE 142
           ++    +TA++ V++G SY+V+L+V+SFNGG+FLAA+ GHA+GF +FR RA R  +
Sbjct: 88  LAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRD 143

[Close]

BLAST of MS016688 vs. ExPASy Swiss-Prot
Match: Q39065 (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-26
Identity = 56/119 (47.06%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 28  KTVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVLVEWLTYCNFMKQS---AE 87
           K ++H + +W  + +VLF+GWPG  S MYAL +IFVF LAVL EWL + + ++ S   + 
Sbjct: 39  KMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSA 98

Query: 88  SVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKSESD 144
           + +  ++QTA++ +R GL+Y+VML+VMSFN G+FL A+ GHAVGF+LF ++  R +  D
Sbjct: 99  NRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDD 157

[Close]

BLAST of MS016688 vs. ExPASy Swiss-Prot
Match: Q8GWP3 (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-25
Identity = 56/135 (41.48%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 14  GTVPP--PATETN--NAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVL 73
           G +PP  P++  N  N+   ++H + +W  + ++LF+GWPG    MY L +I VF+LAV+
Sbjct: 4   GNMPPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVI 63

Query: 74  VEWLTYCNFMK-QSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVG 133
           VEWL + + ++ + + S +  ++QTA++ ++TGL+Y+VML+VMSFNGG+F+ A+ G AVG
Sbjct: 64  VEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVG 123

Query: 134 FVLFRARAKRKSESD 144
           F+LF + A +    D
Sbjct: 124 FMLFGSTAFKNPSDD 138

[Close]

BLAST of MS016688 vs. ExPASy Swiss-Prot
Match: Q9STG2 (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-24
Identity = 55/135 (40.74%), Postives = 87/135 (64.44%), Query Frame = 0


Query: 16  VPPPATETNNAGK------TVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVL 75
           +PPP+  +++          ++H + +W  + +VLF+GWPG  S MYAL +I +F+LAV+
Sbjct: 9   MPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVI 68

Query: 76  VEWLTYCNFMKQSAESVSTAVL-QTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVG 135
            EWL +   ++ S  +   A L QTA++ ++TGLSY+VML+VMSFN G+F+ A+ G+ VG
Sbjct: 69  AEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVG 128

Query: 136 FVLFRARAKRKSESD 144
           F LF +   +K   D
Sbjct: 129 FFLFGSTTFKKPSDD 143

[Close]

BLAST of MS016688 vs. ExPASy Swiss-Prot
Match: Q60EN8 (Copper transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 16  VPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVLVEWLTY 75
           +PPP      A    +H + +W  + +VLFT WPGA   MYALA++F+F LAVL+E+  Y
Sbjct: 10  MPPPPAPVKKA--RYMHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGY 69

Query: 76  CNFMKQSAE---SVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVGFVLF 135
                + A      + A L+TA+HAVR G++Y++ML++MSFNGG+FLA V GHA GF+ F
Sbjct: 70  RVLEARLARRRAPRAAAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 129

[Close]

BLAST of MS016688 vs. ExPASy TrEMBL
Match: A0A6J1CV92 (Copper transporter OS=Momordica charantia OX=3673 GN=LOC111015103 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLKLKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAV 60
           MTLKLKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAV
Sbjct: 9   MTLKLKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAV 68

Query: 61  IFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLA 120
           IFVFVLAVLVEWLTYCNFMKQSAESVS AVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLA
Sbjct: 69  IFVFVLAVLVEWLTYCNFMKQSAESVSKAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLA 128

Query: 121 AVGGHAVGFVLFRARAKRKSESDSTK 147
           AVGGHAVGFVLFRARAKRKSESDSTK
Sbjct: 129 AVGGHAVGFVLFRARAKRKSESDSTK 154

[Close]

BLAST of MS016688 vs. ExPASy TrEMBL
Match: A0A6J1I894 (Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111470087 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 122/149 (81.88%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 3   LKLKATSRHNLGTVPPPATE-----TNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYA 62
           + LK TS HNLG VPPPA E     TNNAGKTVVHK+LYW HDAQVLFTGWPG +SAMYA
Sbjct: 81  MALKTTSHHNLGGVPPPAVESNPANTNNAGKTVVHKTLYWGHDAQVLFTGWPGTNSAMYA 140

Query: 63  LAVIFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGI 122
           LAVIFVFVLAV VEWLTY NFMKQSA++V T VLQ+AIHAVRTGL YMVMLSVMSFNGGI
Sbjct: 141 LAVIFVFVLAVFVEWLTYLNFMKQSADNVLTVVLQSAIHAVRTGLKYMVMLSVMSFNGGI 200

Query: 123 FLAAVGGHAVGFVLFRARAKRKSESDSTK 147
           FLAAVGGHAVGFVLFR RA+RK+ESDS K
Sbjct: 201 FLAAVGGHAVGFVLFRGRAERKAESDSPK 229

[Close]

BLAST of MS016688 vs. ExPASy TrEMBL
Match: A0A6J1FMA0 (Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111447095 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.0e-58
Identity = 121/149 (81.21%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 3   LKLKATSRHNLGTVPPPATE-----TNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYA 62
           + LK TS HNLG VPPPA E     TNNAGKTVVHK+LYW HDAQVLFTGWP  +SAMYA
Sbjct: 2   MALKTTSHHNLGAVPPPAVETNPATTNNAGKTVVHKTLYWGHDAQVLFTGWPSTNSAMYA 61

Query: 63  LAVIFVFVLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGI 122
           LAVIFVFVLAV VEWLTY NFMK+SA++V T VLQTAIHAVRTGL+YMV+LSVMSFNGGI
Sbjct: 62  LAVIFVFVLAVFVEWLTYLNFMKESADNVLTVVLQTAIHAVRTGLNYMVILSVMSFNGGI 121

Query: 123 FLAAVGGHAVGFVLFRARAKRKSESDSTK 147
           FLAAVGGHAVGFVLFRARAKRK++SDS K
Sbjct: 122 FLAAVGGHAVGFVLFRARAKRKAKSDSPK 150

[Close]

BLAST of MS016688 vs. ExPASy TrEMBL
Match: A0A0A0LD01 (Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_3G733240 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.4e-53
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 5   LKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVF 64
           +K TS HNLG VPPP+ ETN A K VVHKSLYW HDAQVLFTGWPG +S MYALAVIFVF
Sbjct: 1   MKTTSHHNLGAVPPPSLETNPAEKAVVHKSLYWGHDAQVLFTGWPGTNSGMYALAVIFVF 60

Query: 65  VLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGG 124
           VLAV+VEWL  CNFMKQ+ ESV   V+QTAIHAVRTGLSYMVML+VMSFNGGIFLAAVGG
Sbjct: 61  VLAVMVEWLNSCNFMKQNGESVGKVVVQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGG 120

Query: 125 HAVGFVLFRARAKRK 140
           HAVGFVLF+ R +RK
Sbjct: 121 HAVGFVLFKRRGERK 135

[Close]

BLAST of MS016688 vs. ExPASy TrEMBL
Match: A0A5A7TLC7 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001240 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.9e-51
Identity = 107/135 (79.26%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 5   LKATSRHNLGTVPPPATETNNAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVF 64
           +K TS HNLG VPPP+ ETN A KT  HKSLYW HDAQVLFTGWPG +S MYALAVIFVF
Sbjct: 1   MKTTSHHNLGAVPPPSPETNPAEKTGAHKSLYWGHDAQVLFTGWPGTNSGMYALAVIFVF 60

Query: 65  VLAVLVEWLTYCNFMKQSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGG 124
           VLAV+VEWL  CNFMKQ+ ESV   V QTAIHAVRTGLSYMVML+VMSFNGGIFLAAVGG
Sbjct: 61  VLAVMVEWLNSCNFMKQNGESVWKVVGQTAIHAVRTGLSYMVMLAVMSFNGGIFLAAVGG 120

Query: 125 HAVGFVLFRARAKRK 140
           HAVGFVLF+ R +RK
Sbjct: 121 HAVGFVLFKKRGERK 135

[Close]

BLAST of MS016688 vs. TAIR 10
Match: AT2G37925.1 (copper transporter 4 )

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-29
Identity = 59/116 (50.86%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 29  TVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVLVEWLTYC---NFMKQSAES 88
           +++H + YW ++ QVLF+GWPG+D  MYALA+IFVF LA L EWL  C   + +KQ A+ 
Sbjct: 28  SLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADK 87

Query: 89  VSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKSE 142
           ++    +TA++ V++G SY+V+L+V+SFNGG+FLAA+ GHA+GF +FR RA R  +
Sbjct: 88  LAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRD 143

[Close]

BLAST of MS016688 vs. TAIR 10
Match: AT5G59030.1 (copper transporter 1 )

HSP 1 Score: 119.0 bits (297), Expect = 3.2e-27
Identity = 56/119 (47.06%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 28  KTVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVLVEWLTYCNFMKQS---AE 87
           K ++H + +W  + +VLF+GWPG  S MYAL +IFVF LAVL EWL + + ++ S   + 
Sbjct: 39  KMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSA 98

Query: 88  SVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKSESD 144
           + +  ++QTA++ +R GL+Y+VML+VMSFN G+FL A+ GHAVGF+LF ++  R +  D
Sbjct: 99  NRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDD 157

[Close]

BLAST of MS016688 vs. TAIR 10
Match: AT2G26975.1 (Ctr copper transporter family )

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-26
Identity = 56/135 (41.48%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 14  GTVPP--PATETN--NAGKTVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVL 73
           G +PP  P++  N  N+   ++H + +W  + ++LF+GWPG    MY L +I VF+LAV+
Sbjct: 4   GNMPPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVI 63

Query: 74  VEWLTYCNFMK-QSAESVSTAVLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVG 133
           VEWL + + ++ + + S +  ++QTA++ ++TGL+Y+VML+VMSFNGG+F+ A+ G AVG
Sbjct: 64  VEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVG 123

Query: 134 FVLFRARAKRKSESD 144
           F+LF + A +    D
Sbjct: 124 FMLFGSTAFKNPSDD 138

[Close]

BLAST of MS016688 vs. TAIR 10
Match: AT3G46900.1 (copper transporter 2 )

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-25
Identity = 55/135 (40.74%), Postives = 87/135 (64.44%), Query Frame = 0


Query: 16  VPPPATETNNAGK------TVVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVL 75
           +PPP+  +++          ++H + +W  + +VLF+GWPG  S MYAL +I +F+LAV+
Sbjct: 9   MPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVI 68

Query: 76  VEWLTYCNFMKQSAESVSTAVL-QTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVG 135
            EWL +   ++ S  +   A L QTA++ ++TGLSY+VML+VMSFN G+F+ A+ G+ VG
Sbjct: 69  AEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVG 128

Query: 136 FVLFRARAKRKSESD 144
           F LF +   +K   D
Sbjct: 129 FFLFGSTTFKKPSDD 143

[Close]

BLAST of MS016688 vs. TAIR 10
Match: AT5G59040.1 (copper transporter 3 )

HSP 1 Score: 108.6 bits (270), Expect = 4.3e-24
Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 30  VVHKSLYWSHDAQVLFTGWPGADSAMYALAVIFVFVLAVLVEWLTYCNFMKQSAESVSTA 89
           ++H + +W    +VLF GWPG    MY + +  +FV++   E L+ C FMK    S+   
Sbjct: 29  MMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGG 88

Query: 90  VLQTAIHAVRTGLSYMVMLSVMSFNGGIFLAAVGGHAVGFVLFRARAKRKSESDS 145
           +LQTA++ VR  LSY+VML+VMSFNGG+F+AA+ G  +GF++F +RA R + S+S
Sbjct: 89  LLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATSSNS 143

The following BLAST results are available for this feature:

BLAST of MS016688 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145715.1	3.0e-72	99.32	copper transporter 4 [Momordica charantia]	[more]
XP_023540707.1	3.8e-59	82.55	copper transporter 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG7027927.1	8.5e-59	81.88	Copper transporter 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596378.1	8.5e-59	81.88	Copper transporter 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022971334.1	2.5e-58	81.88	copper transporter 6-like [Cucurbita maxima]	[more]

BLAST of MS016688 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8SAA5	3.6e-28	50.86	Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2	[more]
Q39065	4.4e-26	47.06	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
Q8GWP3	3.8e-25	41.48	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
Q9STG2	4.2e-24	40.74	Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1	[more]
Q60EN8	1.6e-23	47.54	Copper transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT2 PE=1 SV=1	[more]

BLAST of MS016688 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV92	1.5e-72	99.32	Copper transporter OS=Momordica charantia OX=3673 GN=LOC111015103 PE=3 SV=1	[more]
A0A6J1I894	1.2e-58	81.88	Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111470087 PE=3 SV=1	[more]
A0A6J1FMA0	2.0e-58	81.21	Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111447095 PE=3 SV=1	[more]
A0A0A0LD01	4.4e-53	80.00	Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_3G733240 PE=3 SV=1	[more]
A0A5A7TLC7	1.9e-51	79.26	Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]

BLAST of MS016688 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37925.1	2.6e-29	50.86	copper transporter 4	[more]
AT5G59030.1	3.2e-27	47.06	copper transporter 1	[more]
AT2G26975.1	2.7e-26	41.48	Ctr copper transporter family	[more]
AT3G46900.1	3.0e-25	40.74	copper transporter 2	[more]
AT5G59040.1	4.3e-24	44.35	copper transporter 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 36..78 e-value: 1.2E-6 score: 29.2 coord: 84..132 e-value: 2.8E-12 score: 47.5
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 8..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR12483:SF94	COPPER TRANSPORTER 4	coord: 8..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016688.1	MS016688.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity