MS016684 (gene) Bitter gourd (TR) v1

Overview


Name	MS016684
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich).
Location	scaffold563: 97554 .. 97910 (+)
RNA-Seq Expression	MS016684
Synteny	MS016684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAGCCTGTTGTCTCTGCAGAATCAAACTCCAAGAGTAAGGAAACGAAGAGCCAGAACACATCAAGCAGAGAAGCGAGTTCGTTTAATCAGGAACAAATTGCACACCCATGTCATCTTAGTTCTTCAATCTACTATGGTGGTCAGGATGTGTATCCCCACCCCCACAATACCCAAAACCCTGCAACTGGATTGAACTCTTCCGTGAGTATTGTGGCATTATTTTCCGCAAACCCCACTCTTTTGTTCTGAAGAATCTATTAATTTGCATTGGGACTTTTTCAGATTAAGAAAGATGGGGAAGAAGATGATGATGATTCGGGTGGTGCTTCCAGAGGAAACTGGTGGAAAGGTACG

mRNA sequence

TGGGAGCCTGTTGTCTCTGCAGAATCAAACTCCAAGAGTAAGGAAACGAAGAGCCAGAACACATCAAGCAGAGAAGCGAGTTCGTTTAATCAGGAACAAATTGCACACCCATGTCATCTTAGTTCTTCAATCTACTATGGTGGTCAGGATGTGTATCCCCACCCCCACAATACCCAAAACCCTGCAACTGGATTGAACTCTTCCATTAAGAAAGATGGGGAAGAAGATGATGATGATTCGGGTGGTGCTTCCAGAGGAAACTGGTGGAAAGGTACG

Coding sequence (CDS)

TGGGAGCCTGTTGTCTCTGCAGAATCAAACTCCAAGAGTAAGGAAACGAAGAGCCAGAACACATCAAGCAGAGAAGCGAGTTCGTTTAATCAGGAACAAATTGCACACCCATGTCATCTTAGTTCTTCAATCTACTATGGTGGTCAGGATGTGTATCCCCACCCCCACAATACCCAAAACCCTGCAACTGGATTGAACTCTTCCATTAAGAAAGATGGGGAAGAAGATGATGATGATTCGGGTGGTGCTTCCAGAGGAAACTGGTGGAAAGGTACG

Protein sequence

WEPVVSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNSSIKKDGEEDDDDSGGASRGNWWKGT

Homology

[Close]

BLAST of MS016684 vs. NCBI nr
Match: XP_022145691.1 (uncharacterized protein LOC111015084 [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 9.2e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  WEPVVSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQN 60
          WEPVVSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQN
Sbjct: 7  WEPVVSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQN 66

Query: 61 PATGLNSSIKKDGEEDDDDSGGASRGNWWKGT 93
          PATGLNSSIKKDGEEDDDDSGGASRGNWWKG+
Sbjct: 67 PATGLNSSIKKDGEEDDDDSGGASRGNWWKGS 98

[Close]

BLAST of MS016684 vs. NCBI nr
Match: XP_038905456.1 (uncharacterized protein LOC120091479 isoform X1 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 5   VSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATG 64
           +  E  S+ KE K+Q+TSSRE  SF QEQ   PCHLSSSIYYGG+DVY     TQNP TG
Sbjct: 60  LKTEGTSEYKECKNQSTSSREMDSFYQEQRTDPCHLSSSIYYGGRDVY-----TQNPGTG 119

Query: 65  LNSSIKKDGEEDDDDSGGASRGNWWKGT 93
            NSS+K+DG E  DDSGGASRGNWW+G+
Sbjct: 120 FNSSLKRDGGE--DDSGGASRGNWWQGS 140

[Close]

BLAST of MS016684 vs. NCBI nr
Match: XP_038905457.1 (uncharacterized protein LOC120091479 isoform X2 [Benincasa hispida] >XP_038905459.1 uncharacterized protein LOC120091479 isoform X2 [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 5   VSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATG 64
           +  E  S+ KE K+Q+TSSRE  SF QEQ   PCHLSSSIYYGG+DVY     TQNP TG
Sbjct: 60  LKTEGTSEYKECKNQSTSSREMDSFYQEQRTDPCHLSSSIYYGGRDVY-----TQNPGTG 119

Query: 65  LNSSIKKDGEEDDDDSGGASRGNWWKG 92
            NSS+K+DG E  DDSGGASRGNWW+G
Sbjct: 120 FNSSLKRDGGE--DDSGGASRGNWWQG 139

[Close]

BLAST of MS016684 vs. NCBI nr
Match: XP_016899678.1 (PREDICTED: uncharacterized protein LOC103486348 isoform X3 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-18
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 8   ESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNS 67
           E +SK KE K+ +TSSRE  SF QEQ  +PCHLSSSIYYGGQD+Y      QNP TG NS
Sbjct: 63  EGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIY----TDQNPGTGFNS 122

Query: 68  SIKKDGEEDDDDSGGASRGNWWKGT 93
           S+K+DG E  DDSGGASRGNWW+G+
Sbjct: 123 SLKRDGGE--DDSGGASRGNWWQGS 141

[Close]

BLAST of MS016684 vs. NCBI nr
Match: XP_004137753.1 (uncharacterized protein LOC101220657 isoform X1 [Cucumis sativus] >KGN58824.1 hypothetical protein Csa_002437 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-18
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 8   ESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNS 67
           E NSK KE K+ +TSSRE  SF QEQ  +PCHLSSSIYYGGQDVY     TQNPATG NS
Sbjct: 64  EGNSKYKECKNGSTSSREMGSFYQEQRTNPCHLSSSIYYGGQDVY-----TQNPATGFNS 123

Query: 68  SIKKDGEEDDDDSGGASRGNWWKGT 93
            +K+D    +DDSGGASRGNWW+G+
Sbjct: 124 PLKRD-HGGEDDSGGASRGNWWQGS 142

[Close]

BLAST of MS016684 vs. ExPASy TrEMBL
Match: A0A6J1CX28 (uncharacterized protein LOC111015084 OS=Momordica charantia OX=3673 GN=LOC111015084 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.5e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  WEPVVSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQN 60
          WEPVVSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQN
Sbjct: 7  WEPVVSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQN 66

Query: 61 PATGLNSSIKKDGEEDDDDSGGASRGNWWKGT 93
          PATGLNSSIKKDGEEDDDDSGGASRGNWWKG+
Sbjct: 67 PATGLNSSIKKDGEEDDDDSGGASRGNWWKGS 98

[Close]

BLAST of MS016684 vs. ExPASy TrEMBL
Match: A0A1S3B5B7 (uncharacterized protein LOC103486348 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486348 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 8   ESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNS 67
           E +SK KE K+ +TSSRE  SF QEQ  +PCHLSSSIYYGGQD+Y      QNP TG NS
Sbjct: 66  EGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIY----TDQNPGTGFNS 125

Query: 68  SIKKDGEEDDDDSGGASRGNWWKGT 93
           S+K+DG E  DDSGGASRGNWW+G+
Sbjct: 126 SLKRDGGE--DDSGGASRGNWWQGS 144

[Close]

BLAST of MS016684 vs. ExPASy TrEMBL
Match: A0A5D3DN19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001290 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 8   ESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNS 67
           E +SK KE K+ +TSSRE  SF QEQ  +PCHLSSSIYYGGQD+Y      QNP TG NS
Sbjct: 66  EGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIY----TDQNPGTGFNS 125

Query: 68  SIKKDGEEDDDDSGGASRGNWWKGT 93
           S+K+DG E  DDSGGASRGNWW+G+
Sbjct: 126 SLKRDGGE--DDSGGASRGNWWQGS 144

[Close]

BLAST of MS016684 vs. ExPASy TrEMBL
Match: A0A0A0LD07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733290 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 8   ESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNS 67
           E NSK KE K+ +TSSRE  SF QEQ  +PCHLSSSIYYGGQDVY     TQNPATG NS
Sbjct: 64  EGNSKYKECKNGSTSSREMGSFYQEQRTNPCHLSSSIYYGGQDVY-----TQNPATGFNS 123

Query: 68  SIKKDGEEDDDDSGGASRGNWWKGT 93
            +K+D    +DDSGGASRGNWW+G+
Sbjct: 124 PLKRD-HGGEDDSGGASRGNWWQGS 142

[Close]

BLAST of MS016684 vs. ExPASy TrEMBL
Match: A0A1S4DUN5 (uncharacterized protein LOC103486348 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486348 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 8   ESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNS 67
           E +SK KE K+ +TSSRE  SF QEQ  +PCHLSSSIYYGGQD+Y      QNP TG NS
Sbjct: 63  EGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIY----TDQNPGTGFNS 122

Query: 68  SIKKDGEEDDDDSGGASRGNWWKGT 93
           S+K+DG E  DDSGGASRGNWW+G+
Sbjct: 123 SLKRDGGE--DDSGGASRGNWWQGS 141

[Close]

BLAST of MS016684 vs. TAIR 10
Match: AT5G02020.1 (Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). )

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-12
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 8   ESNSKSKETKSQNTSSRE--ASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGL 67
           E  SK+     +N   +E   S + Q+Q   PCHLSSSIYYGG DVY  P N+ +     
Sbjct: 67  EKTSKTGGNVDRNREQQENHGSGYQQDQRVQPCHLSSSIYYGGPDVYFQPQNSTS----- 126

Query: 68  NSSIKKDGEEDDDDSGGASRGNWWKGT 93
           NS+ KKDG E  DDSG ASRGNWW+G+
Sbjct: 127 NSTNKKDGGE--DDSGSASRGNWWQGS 146

[Close]

BLAST of MS016684 vs. TAIR 10
Match: AT3G55646.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-10
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 12  KSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNSSIKK 71
           +S   K + ++ +E  S+  E+   PCHLSSS+YYGGQ+ Y       +  T  + + KK
Sbjct: 71  QSPNAKGERSNKKEKKSYYNEETEPPCHLSSSLYYGGQETY------SSTTTTTHDTYKK 130

Query: 72  DGEEDDDDSGGASRGNWWKGT 93
           DGEE   DS  ASRGNWW+G+
Sbjct: 131 DGEE--GDSKRASRGNWWEGS 143

[Close]

BLAST of MS016684 vs. TAIR 10
Match: AT2G39855.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-10
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 9   SNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPATGLNSS 68
           +N ++   + + + ++E  S+  E+   PC+LSSSIYYGGQD Y    +T NP      +
Sbjct: 65  TNFETPNERGERSKNKERKSYQSEETQPPCNLSSSIYYGGQDNY--SSSTTNP-----DA 124

Query: 69  IKKDGEEDDDDSGGASRGNWWKGT 93
            KKDGEE D +S  ASRGNWW+G+
Sbjct: 125 YKKDGEEGDSES--ASRGNWWEGS 139

[Close]

BLAST of MS016684 vs. TAIR 10
Match: AT5G59080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.3e-06
Identity = 34/92 (36.96%), Postives = 46/92 (50.00%), Query Frame = 0


Query: 3   PVVSAESNSKSKETKSQNTSSREASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPA 62
           P  S  S      +K  + + R  S   QE    PCHLSSS+YYGGQDVY     T    
Sbjct: 42  PHPSKGSARDGSNSKHGSQAQRRESLNAQEDRVEPCHLSSSLYYGGQDVYAR-STTNQTY 101

Query: 63  TGLNSSIKKDGEEDDDDSG--GASRGNWWKGT 93
             + +  ++ GE+D +       SRGNWW+G+
Sbjct: 102 PPVKNDRRRSGEDDANGQNPQDVSRGNWWQGS 132

[Close]

BLAST of MS016684 vs. TAIR 10
Match: AT5G02020.2 (Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). )

HSP 1 Score: 43.9 bits (102), Expect = 8.1e-05
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 8   ESNSKSKETKSQNTSSRE--ASSFNQEQIAHPCHLSSSIYYGGQDVYPHPHNTQNPAT 64
           E  SK+     +N   +E   S + Q+Q   PCHLSSSIYYGG DVY  P N+ + +T
Sbjct: 67  EKTSKTGGNVDRNREQQENHGSGYQQDQRVQPCHLSSSIYYGGPDVYFQPQNSTSNST 124

The following BLAST results are available for this feature:

BLAST of MS016684 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145691.1	9.2e-43	98.91	uncharacterized protein LOC111015084 [Momordica charantia]	[more]
XP_038905456.1	2.1e-18	64.77	uncharacterized protein LOC120091479 isoform X1 [Benincasa hispida]	[more]
XP_038905457.1	2.7e-18	65.52	uncharacterized protein LOC120091479 isoform X2 [Benincasa hispida] >XP_03890545...	[more]
XP_016899678.1	3.5e-18	65.88	PREDICTED: uncharacterized protein LOC103486348 isoform X3 [Cucumis melo]	[more]
XP_004137753.1	3.5e-18	67.06	uncharacterized protein LOC101220657 isoform X1 [Cucumis sativus] >KGN58824.1 hy...	[more]

BLAST of MS016684 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX28	4.5e-43	98.91	uncharacterized protein LOC111015084 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A1S3B5B7	1.7e-18	65.88	uncharacterized protein LOC103486348 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3DN19	1.7e-18	65.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD07	1.7e-18	67.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733290 PE=4 SV=1	[more]
A0A1S4DUN5	1.7e-18	65.88	uncharacterized protein LOC103486348 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MS016684 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02020.1	2.4e-12	50.57	Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine ric...	[more]
AT3G55646.1	3.8e-10	43.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G39855.2	6.4e-10	44.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G59080.1	4.3e-06	36.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G02020.2	8.1e-05	44.83	Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine ric...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..67
None	No IPR available	PANTHER	PTHR33738	EMB\|CAB82975.1	coord: 8..91
None	No IPR available	PANTHER	PTHR33738:SF1	PLANT/T7H20-70 PROTEIN	coord: 8..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016684.1	MS016684.1	mRNA