MS016499 (gene) Bitter gourd (TR) v1

Overview
NameMS016499
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf4
Locationscaffold657: 189755 .. 189844 (+)
RNA-Seq ExpressionMS016499
SyntenyMS016499
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGACTCATACCGATCAGAATCTGATCCCACGAGAAATTGAGCAAAAGGCTGTCGAATTGGTCTATTTCTTGTGTGTACCAATTGAAGTT

mRNA sequence

TTGACTCATACCGATCAGAATCTGATCCCACGAGAAATTGAGCAAAAGGCTGTCGAATTGGTCTATTTCTTGTGTGTACCAATTGAAGTT

Coding sequence (CDS)

TTGACTCATACCGATCAGAATCTGATCCCACGAGAAATTGAGCAAAAGGCTGTCGAATTGGTCTATTTCTTGTGTGTACCAATTGAAGTT

Protein sequence

LTHTDQNLIPREIEQKAVELVYFLCVPIEV
Homology
[Close]
BLAST of MS016499 vs. NCBI nr
Match: YP_009347715.1 (photosystem I assembly protein ycf4 [Anoectochilus emeiensis] >YP_010048729.1 photosystem I assembly protein Ycf4 [Anoectochilus zhejiangensis] >AKP95074.1 photosystem I assembly protein Ycf4 [Anoectochilus roxburghii] >QXO02542.1 photosystem I assembly protein Ycf4 [Anoectochilus chapaensis] >QXO02628.1 photosystem I assembly protein Ycf4 [Anoectochilus hainanensis] >QPK77102.1 photosystem I assembly protein Ycf4 [Anoectochilus zhejiangensis] >BAW81323.1 photosystem I assembly protein ycf4 [Anoectochilus emeiensis])

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LTHTD+NL PREIEQKA EL YFLC+PIEV
Sbjct: 154 LTHTDENLTPREIEQKAAELAYFLCIPIEV 183

[Close]
BLAST of MS016499 vs. NCBI nr
Match: QGX05818.1 (photosystem I assembly protein Ycf4 [Dracaena angustifolia])

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFLCVPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLCVPIEV 183

[Close]
BLAST of MS016499 vs. NCBI nr
Match: YP_009861215.1 (photosystem I assembly protein Ycf4 [Orontium aquaticum] >QIU82905.1 photosystem I assembly protein Ycf4 [Orontium aquaticum])

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFLCVPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLCVPIEV 183

[Close]
BLAST of MS016499 vs. NCBI nr
Match: YP_009349285.1 (photosystem I assembly protein Ycf4 [Symplocarpus renifolius] >YP_009709598.1 Ycf4 [Symplocarpus nipponicus] >APZ83150.1 photosystem I assembly protein Ycf4 [Symplocarpus renifolius] >QEX51452.1 Ycf4 [Symplocarpus nipponicus] >QEX51539.1 Ycf4 [Symplocarpus nipponicus])

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFLCVPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLCVPIEV 183

[Close]
BLAST of MS016499 vs. NCBI nr
Match: QGQ49153.1 (photosystem I assembly protein ycf4 [Eria corneri])

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFLCVPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLCVPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy Swiss-Prot
Match: Q2QD78 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.1e-06
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TDQNL PREIEQKA EL YFL VPIEV
Sbjct: 154 LTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy Swiss-Prot
Match: Q8S8W6 (Photosystem I assembly protein Ycf4 OS=Atropa belladonna OX=33113 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.8e-06
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFL VPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLRVPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy Swiss-Prot
Match: A0A346 (Photosystem I assembly protein Ycf4 OS=Coffea arabica OX=13443 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.8e-06
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFL VPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLRVPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy Swiss-Prot
Match: Q49KY7 (Photosystem I assembly protein Ycf4 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.8e-06
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFL VPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLRVPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy Swiss-Prot
Match: A0ZZ46 (Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.8e-06
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFL VPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLRVPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy TrEMBL
Match: A0A0U2DUT4 (Photosystem I assembly protein Ycf4 OS=Anoectochilus roxburghii OX=569774 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-05
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LTHTD+NL PREIEQKA EL YFLC+PIEV
Sbjct: 154 LTHTDENLTPREIEQKAAELAYFLCIPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy TrEMBL
Match: A0A7T0P7W4 (Photosystem I assembly protein Ycf4 OS=Anoectochilus zhejiangensis OX=2761820 GN=ycf4 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-05
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LTHTD+NL PREIEQKA EL YFLC+PIEV
Sbjct: 154 LTHTDENLTPREIEQKAAELAYFLCIPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy TrEMBL
Match: A0A1Q2SQ86 (Photosystem I assembly protein Ycf4 OS=Anoectochilus emeiensis OX=1661584 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-05
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LTHTD+NL PREIEQKA EL YFLC+PIEV
Sbjct: 154 LTHTDENLTPREIEQKAAELAYFLCIPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy TrEMBL
Match: A0A5J6NAJ5 (Photosystem I assembly protein Ycf4 OS=Symplocarpus nipponicus OX=318071 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFLCVPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLCVPIEV 183

[Close]
BLAST of MS016499 vs. ExPASy TrEMBL
Match: A0A6B9TWI2 (Photosystem I assembly protein Ycf4 OS=Alocasia navicularis OX=644638 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           LT TD+NL PREIEQKA EL YFLCVPIEV
Sbjct: 154 LTRTDENLTPREIEQKAAELAYFLCVPIEV 183

[Close]
BLAST of MS016499 vs. TAIR 10
Match: ATCG00520.1 (unfolded protein binding )

HSP 1 Score: 42.7 bits (99), Expect = 5.9e-05
Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 0 

Query: 1   LTHTDQNLIPREIEQKAVELVYFLCVPIEV 31
           L  TD+N   REIEQKA EL YFL VPIEV
Sbjct: 154 LIRTDENFTTREIEQKAAELAYFLRVPIEV 183

The following BLAST results are available for this feature:
BLAST of MS016499 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009347715.13.2e-0583.33photosystem I assembly protein ycf4 [Anoectochilus emeiensis] >YP_010048729.1 ph... [more]
QGX05818.12.1e-0483.33photosystem I assembly protein Ycf4 [Dracaena angustifolia][more]
YP_009861215.12.1e-0483.33photosystem I assembly protein Ycf4 [Orontium aquaticum] >QIU82905.1 photosystem... [more]
YP_009349285.12.1e-0483.33photosystem I assembly protein Ycf4 [Symplocarpus renifolius] >YP_009709598.1 Yc... [more]
QGQ49153.12.1e-0483.33photosystem I assembly protein ycf4 [Eria corneri][more]
BLAST of MS016499 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QD783.1e-0683.33Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1[more]
Q8S8W66.8e-0680.00Photosystem I assembly protein Ycf4 OS=Atropa belladonna OX=33113 GN=ycf4 PE=3 S... [more]
A0A3466.8e-0680.00Photosystem I assembly protein Ycf4 OS=Coffea arabica OX=13443 GN=ycf4 PE=3 SV=1[more]
Q49KY76.8e-0680.00Photosystem I assembly protein Ycf4 OS=Eucalyptus globulus subsp. globulus OX=71... [more]
A0ZZ466.8e-0680.00Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3... [more]
BLAST of MS016499 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0U2DUT41.6e-0583.33Photosystem I assembly protein Ycf4 OS=Anoectochilus roxburghii OX=569774 GN=ycf... [more]
A0A7T0P7W41.6e-0583.33Photosystem I assembly protein Ycf4 OS=Anoectochilus zhejiangensis OX=2761820 GN... [more]
A0A1Q2SQ861.6e-0583.33Photosystem I assembly protein Ycf4 OS=Anoectochilus emeiensis OX=1661584 GN=ycf... [more]
A0A5J6NAJ51.0e-0483.33Photosystem I assembly protein Ycf4 OS=Symplocarpus nipponicus OX=318071 GN=ycf4... [more]
A0A6B9TWI21.0e-0483.33Photosystem I assembly protein Ycf4 OS=Alocasia navicularis OX=644638 GN=ycf4 PE... [more]
BLAST of MS016499 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00520.15.9e-0570.00unfolded protein binding [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016499.1MS016499.1mRNA