![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS016424 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTCACCTCTCTATTTACAGCTATTCTCCGGTAATTCTGAGATCTTCGGCACGGAGCTTTCTCCT ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTCACCTCTCTATTTACAGCTATTCTCCGGTAATTCTGAGATCTTCGGCACGGAGCTTTCTCCT ATGGCGTATGGCGTTCCAGCCACAGCGGCTGGCTCGGGATCAACTTCTTCGATCAGGCAGGTCAAGCTGGATAGAGAGAGCGAGCTCAGGATTGAAGTTGGAAGCGACTCACCTCTCTATTTACAGCTATTCTCCGGTAATTCTGAGATCTTCGGCACGGAGCTTTCTCCT MAYGVPATAAGSGSTSSIRQVKLDRESELRIEVGSDSPLYLQLFSGNSEIFGTELSP Homology
BLAST of MS016424 vs. NCBI nr
Match: XP_022134389.1 (protein CLP1 homolog [Momordica charantia]) HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16 Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0
BLAST of MS016424 vs. NCBI nr
Match: XP_008459297.1 (PREDICTED: protein CLP1 homolog [Cucumis melo] >KAA0039517.1 protein CLP1-like protein [Cucumis melo var. makuwa] >TYK15271.1 protein CLP1-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16 Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of MS016424 vs. NCBI nr
Match: XP_023533688.1 (protein CLP1 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of MS016424 vs. NCBI nr
Match: XP_022990827.1 (protein CLP1 homolog [Cucurbita maxima]) HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of MS016424 vs. NCBI nr
Match: XP_022921936.1 (protein CLP1 homolog [Cucurbita moschata] >KAG6602481.1 Protein CLP1-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033157.1 Protein CLP1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 94.0 bits (232), Expect = 4.6e-16 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of MS016424 vs. ExPASy Swiss-Prot
Match: Q9SR06 (Protein CLP1 homolog OS=Arabidopsis thaliana OX=3702 GN=CLPS3 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 3.1e-07 Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 0
BLAST of MS016424 vs. ExPASy Swiss-Prot
Match: Q9FLE2 (Protein CLP1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CLPS5 PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 3.8e-05 Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0
BLAST of MS016424 vs. ExPASy Swiss-Prot
Match: Q6NS21 (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Xenopus laevis OX=8355 GN=clp1 PE=2 SV=1) HSP 1 Score: 43.9 bits (102), Expect = 7.1e-04 Identity = 23/55 (41.82%), Postives = 35/55 (63.64%), Query Frame = 0
BLAST of MS016424 vs. ExPASy Swiss-Prot
Match: Q66JK4 (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Xenopus tropicalis OX=8364 GN=clp1 PE=2 SV=1) HSP 1 Score: 43.5 bits (101), Expect = 9.3e-04 Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 0
BLAST of MS016424 vs. ExPASy TrEMBL
Match: A0A6J1BYM6 (Protein CLP1 homolog OS=Momordica charantia OX=3673 GN=LOC111006662 PE=3 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 5.8e-17 Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0
BLAST of MS016424 vs. ExPASy TrEMBL
Match: A0A5A7TDF1 (Protein CLP1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00480 PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17 Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of MS016424 vs. ExPASy TrEMBL
Match: A0A1S3C9X9 (Protein CLP1 homolog OS=Cucumis melo OX=3656 GN=LOC103498469 PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17 Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of MS016424 vs. ExPASy TrEMBL
Match: A0A6J1JJY4 (Protein CLP1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111487604 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of MS016424 vs. ExPASy TrEMBL
Match: A0A6J1E2R2 (Protein CLP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430040 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0
BLAST of MS016424 vs. TAIR 10
Match: AT3G04680.1 (CLP-similar protein 3 ) HSP 1 Score: 55.1 bits (131), Expect = 2.2e-08 Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 0
BLAST of MS016424 vs. TAIR 10
Match: AT3G04680.2 (CLP-similar protein 3 ) HSP 1 Score: 55.1 bits (131), Expect = 2.2e-08 Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 0
BLAST of MS016424 vs. TAIR 10
Match: AT5G39930.1 (CLP1-similar protein 5 ) HSP 1 Score: 48.1 bits (113), Expect = 2.7e-06 Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|