MS016269 (gene) Bitter gourd (TR) v1

Overview


Name	MS016269
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ubiquitin_4 domain-containing protein
Location	scaffold9_2: 1554639 .. 1554734 (-)
RNA-Seq Expression	MS016269
Synteny	MS016269

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATTGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGGTT

mRNA sequence

GTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATTGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGGTT

Coding sequence (CDS)

GTATGGGGACATTTCTGTTTATGTTACGAAGGCCAAAATCTTATTGATGACAAAGCATGCATTAGAGTTTTTGGCATTAAAGATGGTGATCAGGTT

Protein sequence

VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV

Homology

[Close]

BLAST of MS016269 vs. NCBI nr
Match: XP_022153470.1 (uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153471.1 uncharacterized protein LOC111020973 isoform X1 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQ+
Sbjct: 104 VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQL 135

[Close]

BLAST of MS016269 vs. NCBI nr
Match: XP_022153473.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQ+
Sbjct: 104 VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQL 135

[Close]

BLAST of MS016269 vs. NCBI nr
Match: XP_038904272.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           +WGHFCLCYEG+ LIDDK CIRVFGIKDGDQ+
Sbjct: 106 IWGHFCLCYEGEKLIDDKTCIRVFGIKDGDQL 137

[Close]

BLAST of MS016269 vs. NCBI nr
Match: XP_038904269.1 (uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           +WGHFCLCYEG+ LIDDK CIRVFGIKDGDQ+
Sbjct: 106 IWGHFCLCYEGEKLIDDKTCIRVFGIKDGDQL 137

[Close]

BLAST of MS016269 vs. NCBI nr
Match: GAV75436.1 (hypothetical protein CFOL_v3_18915, partial [Cephalotus follicularis])

HSP 1 Score: 68.9 bits (167), Expect = 8.8e-09
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWGHFCLCYEGQ L +DKACI++FGIKDGDQ+
Sbjct: 112 VWGHFCLCYEGQKLTNDKACIKIFGIKDGDQL 143

[Close]

BLAST of MS016269 vs. ExPASy TrEMBL
Match: A0A6J1DGY1 (uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020973 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQ+
Sbjct: 104 VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQL 135

[Close]

BLAST of MS016269 vs. ExPASy TrEMBL
Match: A0A6J1DHJ6 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020973 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQ+
Sbjct: 104 VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQL 135

[Close]

BLAST of MS016269 vs. ExPASy TrEMBL
Match: A0A1Q3C569 (Ubiquitin_4 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18915 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-09
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWGHFCLCYEGQ L +DKACI++FGIKDGDQ+
Sbjct: 112 VWGHFCLCYEGQKLTNDKACIKIFGIKDGDQL 143

[Close]

BLAST of MS016269 vs. ExPASy TrEMBL
Match: A0A6J1KGI2 (uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWGHFCLCYEG+ LIDDKA IRV GIKDGDQ+
Sbjct: 105 VWGHFCLCYEGEKLIDDKAYIRVVGIKDGDQL 136

[Close]

BLAST of MS016269 vs. ExPASy TrEMBL
Match: A0A0A0KTJ1 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           +WGHFCLCYEG+ LIDDK CI+ +GIKDGDQ+
Sbjct: 105 IWGHFCLCYEGEKLIDDKTCIKGYGIKDGDQL 136

[Close]

BLAST of MS016269 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-08
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWGHFCLCY  Q L++DK  IR  G+ DGDQ+
Sbjct: 102 VWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQL 133

[Close]

BLAST of MS016269 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-08
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 1  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
          VWGHFCLC+ GQ LI D  CI  +G+KDGD+V
Sbjct: 68 VWGHFCLCFGGQKLITDTDCIGNYGMKDGDEV 99

[Close]

BLAST of MS016269 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 5.7e-06
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 1   VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
           VWG FCL YE + LI++   +  FGIKDGDQ+
Sbjct: 87  VWGQFCLSYEDKRLINESEYLTEFGIKDGDQL 118

[Close]

BLAST of MS016269 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 5.7e-06
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 1  VWGHFCLCYEGQNLIDDKACIRVFGIKDGDQV 33
          VWG FCL YE + LI++   +  FGIKDGDQ+
Sbjct: 52 VWGQFCLSYEDKRLINESEYLTEFGIKDGDQL 83

The following BLAST results are available for this feature:

BLAST of MS016269 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153470.1	4.2e-11	96.88	uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153...	[more]
XP_022153473.1	4.2e-11	96.88	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Momordica cha...	[more]
XP_038904272.1	1.8e-09	84.38	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Benincas...	[more]
XP_038904269.1	1.8e-09	84.38	uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida]	[more]
GAV75436.1	8.8e-09	81.25	hypothetical protein CFOL_v3_18915, partial [Cephalotus follicularis]	[more]

BLAST of MS016269 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016269 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGY1	2.0e-11	96.88	uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DHJ6	2.0e-11	96.88	U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 OS=Momordica c...	[more]
A0A1Q3C569	4.3e-09	81.25	Ubiquitin_4 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3...	[more]
A0A6J1KGI2	2.8e-08	84.38	uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024...	[more]
A0A0A0KTJ1	2.8e-08	75.00	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470...	[more]

BLAST of MS016269 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	1.2e-08	62.50	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	1.2e-08	65.63	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	5.7e-06	56.25	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	5.7e-06	56.25	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 1..32 e-value: 3.8E-8 score: 33.3
None	No IPR available	GENE3D	3.10.20.90		coord: 1..32 e-value: 1.3E-11 score: 46.2
None	No IPR available	PANTHER	PTHR14942:SF9	OS02G0188500 PROTEIN	coord: 1..32
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 1..32
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016269.1	MS016269.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex