MS016261 (gene) Bitter gourd (TR) v1

Overview


Name	MS016261
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein FAR1-RELATED SEQUENCE
Location	scaffold9_2: 1512253 .. 1512591 (+)
RNA-Seq Expression	MS016261
Synteny	MS016261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAGAATCCCCTGCCTCCTGCTGTTGGAATGGAGTTTGAGTCTTATGAGGATGTGTACTATTTCTATAGTTGCTATGCAAAAGAACAAGGATTTGGAGTCCGAGTCAGTAACACATGGTATAGAAAGAGTAAGGAAAGATACCGAGGAAAACTTAGCTGCAGCAGTGCAGGTTTCAAGAAGAGAAGTGAAGCGAATCGTCCAAGACCAGAAACGAGAACTGGTTGCCCAGCTATGATAAAATTTAGGTTGATGGATACCAGAAGATGGAGAATAATTGAAGTTGAGCTTGACCACAATCACCTGATCAACCCAACTAGTGGAAAATTTTACAAATCT

mRNA sequence

GGGGAGAATCCCCTGCCTCCTGCTGTTGGAATGGAGTTTGAGTCTTATGAGGATGTGTACTATTTCTATAGTTGCTATGCAAAAGAACAAGGATTTGGAGTCCGAGTCAGTAACACATGGTATAGAAAGAGTAAGGAAAGATACCGAGGAAAACTTAGCTGCAGCAGTGCAGGTTTCAAGAAGAGAAGTGAAGCGAATCGTCCAAGACCAGAAACGAGAACTGGTTGCCCAGCTATGATAAAATTTAGGTTGATGGATACCAGAAGATGGAGAATAATTGAAGTTGAGCTTGACCACAATCACCTGATCAACCCAACTAGTGGAAAATTTTACAAATCT

Coding sequence (CDS)

GGGGAGAATCCCCTGCCTCCTGCTGTTGGAATGGAGTTTGAGTCTTATGAGGATGTGTACTATTTCTATAGTTGCTATGCAAAAGAACAAGGATTTGGAGTCCGAGTCAGTAACACATGGTATAGAAAGAGTAAGGAAAGATACCGAGGAAAACTTAGCTGCAGCAGTGCAGGTTTCAAGAAGAGAAGTGAAGCGAATCGTCCAAGACCAGAAACGAGAACTGGTTGCCCAGCTATGATAAAATTTAGGTTGATGGATACCAGAAGATGGAGAATAATTGAAGTTGAGCTTGACCACAATCACCTGATCAACCCAACTAGTGGAAAATTTTACAAATCT

Protein sequence

GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS

Homology

[Close]

BLAST of MS016261 vs. NCBI nr
Match: XP_022948397.1 (protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 240.0 bits (611), Expect = 1.0e-59
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 99  KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 151

[Close]

BLAST of MS016261 vs. NCBI nr
Match: KAG6606815.1 (Protein FAR1-RELATED SEQUENCE 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240.0 bits (611), Expect = 1.0e-59
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 99  KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 151

[Close]

BLAST of MS016261 vs. NCBI nr
Match: KAG7036521.1 (Protein FAR1-RELATED SEQUENCE 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.0 bits (611), Expect = 1.0e-59
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK
Sbjct: 62  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 121

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 122 KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 174

[Close]

BLAST of MS016261 vs. NCBI nr
Match: XP_022998133.1 (protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 1.0e-59
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 99  KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 151

[Close]

BLAST of MS016261 vs. NCBI nr
Match: XP_023523301.1 (protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023523302.1 protein FAR1-RELATED SEQUENCE 6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 1.0e-59
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 99  KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 151

[Close]

BLAST of MS016261 vs. ExPASy Swiss-Prot
Match: Q9SSQ4 (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-32
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 7   PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWY-RKSKERYRGKLSCSSAGFKKRSEA 66
           PAVGMEFESY+D Y +Y+CYA E GF VRV N+W+ R+SKE+Y   L CSS GFK+ ++ 
Sbjct: 85  PAVGMEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDV 144

Query: 67  NRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           NR R ETRTGCPAMI+ R +D++RWR++EV LDHNHL+     K YKS
Sbjct: 145 NRVRKETRTGCPAMIRMRQVDSKRWRVVEVTLDHNHLL---GCKLYKS 189

[Close]

BLAST of MS016261 vs. ExPASy Swiss-Prot
Match: Q9S793 (Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=FRS8 PE=2 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-23
Identity = 54/109 (49.54%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 6   PPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTW-YRKSKERYRGKLSCSSAGFKKRSE 65
           PP  GMEFESY+D Y FY+ YA+E GF +RV ++W  R SKE+    L C+  GFK   +
Sbjct: 94  PPTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKD 153

Query: 66  ANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           A+  R ETRTGC AMI+ RL+   RW++ +V+LDHNH  +P      KS
Sbjct: 154 AHSRRKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFDPQRAHNSKS 202

[Close]

BLAST of MS016261 vs. ExPASy Swiss-Prot
Match: Q6NQJ7 (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-11
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 11  MEFESYEDVYYFYSCYAKEQGFG-VRVSNTWYRKSKERYRGKLSCSSAGFKKRS-EANRP 70
           MEFE++ED Y FY  YAK  GFG  ++S+   R SKE    K SC   G K++S +A  P
Sbjct: 1   MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDAINP 60

Query: 71  RPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           R   + GC A +  +     +W +     +HNH + P    +++S
Sbjct: 61  RASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHYFRS 105

[Close]

BLAST of MS016261 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 5   LPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNT-WYRKSKERYRGKLSCSSAGFK--- 64
           L P  G+EFES E    FY+ YA+  GF  RVS++   R+     + +  C+  GF+   
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 65  ----KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINP 106
               K  E  RPR  TR GC A +  ++ D+ +W +     DHNH + P
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVP 179

[Close]

BLAST of MS016261 vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-09
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-KLSCSSAGF 60
           G++ L P VG+EF++ E+   +Y+ YA   GF VR    +  ++       +  CS  GF
Sbjct: 22  GDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF 81

Query: 61  KKRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNH 102
           +  S         RTGCPA I+ +  DT +W + +++ +HNH
Sbjct: 82  QLNS---------RTGCPAFIRVQRRDTGKWVLDQIQKEHNH 114

[Close]

BLAST of MS016261 vs. ExPASy TrEMBL
Match: A0A6J1KFY1 (Protein FAR1-RELATED SEQUENCE OS=Cucurbita maxima OX=3661 GN=LOC111492869 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.9e-60
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 99  KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 151

[Close]

BLAST of MS016261 vs. ExPASy TrEMBL
Match: A0A6J1G944 (Protein FAR1-RELATED SEQUENCE OS=Cucurbita moschata OX=3662 GN=LOC111452090 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.9e-60
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 99  KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 151

[Close]

BLAST of MS016261 vs. ExPASy TrEMBL
Match: A0A6J1DHG7 (uncharacterized protein LOC111020950 OS=Momordica charantia OX=3673 GN=LOC111020950 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.4e-60
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPT GKFYKS
Sbjct: 99  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTGGKFYKS 151

[Close]

BLAST of MS016261 vs. ExPASy TrEMBL
Match: A0A1S3BYS6 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo OX=3656 GN=LOC103494662 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKE+YRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKEKYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 99  KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 151

[Close]

BLAST of MS016261 vs. ExPASy TrEMBL
Match: A0A5D3E0Z6 (Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002110 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFK 60
           GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKE+YRGKLSCSSAGFK
Sbjct: 39  GENPLPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKEKYRGKLSCSSAGFK 98

Query: 61  KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           K+SEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS
Sbjct: 99  KKSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 151

[Close]

BLAST of MS016261 vs. TAIR 10
Match: AT1G52520.1 (FAR1-related sequence 6 )

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-33
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 7   PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWY-RKSKERYRGKLSCSSAGFKKRSEA 66
           PAVGMEFESY+D Y +Y+CYA E GF VRV N+W+ R+SKE+Y   L CSS GFK+ ++ 
Sbjct: 85  PAVGMEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDV 144

Query: 67  NRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           NR R ETRTGCPAMI+ R +D++RWR++EV LDHNHL+     K YKS
Sbjct: 145 NRVRKETRTGCPAMIRMRQVDSKRWRVVEVTLDHNHLL---GCKLYKS 189

[Close]

BLAST of MS016261 vs. TAIR 10
Match: AT1G80010.1 (FAR1-related sequence 8 )

HSP 1 Score: 110.5 bits (275), Expect = 8.7e-25
Identity = 54/109 (49.54%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 6   PPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTW-YRKSKERYRGKLSCSSAGFKKRSE 65
           PP  GMEFESY+D Y FY+ YA+E GF +RV ++W  R SKE+    L C+  GFK   +
Sbjct: 94  PPTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKD 153

Query: 66  ANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINPTSGKFYKS 114
           A+  R ETRTGC AMI+ RL+   RW++ +V+LDHNH  +P      KS
Sbjct: 154 AHSRRKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFDPQRAHNSKS 202

[Close]

BLAST of MS016261 vs. TAIR 10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 7   PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-----KLSCSSAGFK- 66
           P VG EFES    + FY+ YA + GF +RVS    + S+ R+ G     +L C+  G++ 
Sbjct: 70  PYVGQEFESEAAAHGFYNAYATKVGFVIRVS----KLSRSRHDGSPIGRQLVCNKEGYRL 129

Query: 67  --KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINP 106
             KR +  R R ETR GC AMI  R  ++ +W I +   +HNH + P
Sbjct: 130 PSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLMP 172

[Close]

BLAST of MS016261 vs. TAIR 10
Match: AT3G59470.2 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 7   PAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERYRG-----KLSCSSAGFK- 66
           P VG EFES    + FY+ YA + GF +RVS    + S+ R+ G     +L C+  G++ 
Sbjct: 70  PYVGQEFESEAAAHGFYNAYATKVGFVIRVS----KLSRSRHDGSPIGRQLVCNKEGYRL 129

Query: 67  --KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINP 106
             KR +  R R ETR GC AMI  R  ++ +W I +   +HNH + P
Sbjct: 130 PSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLMP 172

[Close]

BLAST of MS016261 vs. TAIR 10
Match: AT4G38180.1 (FAR1-related sequence 5 )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 5   LPPAVGMEFESYEDVYYFYSCYAKEQGFGVRVSNT-WYRKSKERYRGKLSCSSAGFK--- 64
           L P  G+EFES E    FY+ YA+  GF  RVS++   R+     + +  C+  GF+   
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 65  ----KRSEANRPRPETRTGCPAMIKFRLMDTRRWRIIEVELDHNHLINP 106
               K  E  RPR  TR GC A +  ++ D+ +W +     DHNH + P
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVP 179

The following BLAST results are available for this feature:

BLAST of MS016261 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948397.1	1.0e-59	99.12	protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita moschata]	[more]
KAG6606815.1	1.0e-59	99.12	Protein FAR1-RELATED SEQUENCE 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7036521.1	1.0e-59	99.12	Protein FAR1-RELATED SEQUENCE 6, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022998133.1	1.0e-59	99.12	protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita maxima]	[more]
XP_023523301.1	1.0e-59	99.12	protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of MS016261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSQ4	2.5e-32	61.11	Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=...	[more]
Q9S793	1.2e-23	49.54	Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=FRS8 PE=2 SV=...	[more]
Q6NQJ7	9.1e-11	36.19	Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=...	[more]
Q9SZL8	2.2e-09	34.86	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]
Q9M8J3	3.8e-09	32.35	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=...	[more]

BLAST of MS016261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFY1	4.9e-60	99.12	Protein FAR1-RELATED SEQUENCE OS=Cucurbita maxima OX=3661 GN=LOC111492869 PE=3 S...	[more]
A0A6J1G944	4.9e-60	99.12	Protein FAR1-RELATED SEQUENCE OS=Cucurbita moschata OX=3662 GN=LOC111452090 PE=3...	[more]
A0A6J1DHG7	6.4e-60	99.12	uncharacterized protein LOC111020950 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A1S3BYS6	1.1e-59	98.23	Protein FAR1-RELATED SEQUENCE OS=Cucumis melo OX=3656 GN=LOC103494662 PE=3 SV=1	[more]
A0A5D3E0Z6	1.1e-59	98.23	Protein FAR1-RELATED SEQUENCE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of MS016261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52520.1	1.7e-33	61.11	FAR1-related sequence 6	[more]
AT1G80010.1	8.7e-25	49.54	FAR1-related sequence 8	[more]
AT3G59470.1	1.4e-11	38.32	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.2	1.4e-11	38.32	Far-red impaired responsive (FAR1) family protein	[more]
AT4G38180.1	1.6e-10	34.86	FAR1-related sequence 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 22..104 e-value: 7.5E-22 score: 77.8
IPR031052	FHY3/FAR1 family	PANTHER	PTHR31669	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	coord: 3..113
None	No IPR available	PANTHER	PTHR31669:SF88	PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1	coord: 3..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016261.1	MS016261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated