MS016242 (gene) Bitter gourd (TR) v1

Overview


Name	MS016242
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ethylene-responsive transcription factor ERF003-like
Location	scaffold9_2: 1381236 .. 1382007 (+)
RNA-Seq Expression	MS016242
Synteny	MS016242

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGACCTCAACACAAGTACAGAGGAGTCCGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAGATTCGCCACCCTTTGCTGTAATATTCTCTTTTCTTCTCCTAACAATTACGATTATTTAGTTCTTTTAAACTCTAGTACGTAACAATTTTATTTTTTATTATATTTTAATCTTTACTGGGAAGAATTTCGTCATTTAGTGATCACGTATGTAATGATCATTTTAAACAAACTTAACAAGCTTTTCAATACTATACATTTACGTACATCTAACTAAATCGTTACCTATTAATATTTATGAGTAGAGTTGAAATTAAATTGTTTCGATTTAAAATGGCACTAAAATAAGTTTCTCGACCTCCTTAGGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCCGAAGACGCCGCTCGAGCTTACGAGGAAGCAGCCAGAATAATGTGTTGCCCTAATAATCTCTCCTCCAATCACAATGCACCACCTCAGTACTCCTCGTCCGCATCGGCGTCGGGGCCGGTGTCGAAGCTTCTCACTCCGACTTTGATCGATAAATTGGAGAAATGTCGAATGGCTTCCTTCCAAATGGCCAAAAAGAAACTCCCCACCAAAACGCACCTATACGACCCGAGTCGCCGTCCGGCGGCGAAACTCGACGGCGGAGGAGTTCAATCGCCGGAGACTCAGGAGTTTCACCGGCTTGAAGACGACCACGTAGAGCAAATGATACAAGAGTTGCTTGATCTTGGCTCCTTTCACTTTTGCCCT

mRNA sequence

ATGGCGAGACCTCAACACAAGTACAGAGGAGTCCGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAGATTCGCCACCCTTTGCTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCCGAAGACGCCGCTCGAGCTTACGAGGAAGCAGCCAGAATAATGTGTTGCCCTAATAATCTCTCCTCCAATCACAATGCACCACCTCAGTACTCCTCGTCCGCATCGGCGTCGGGGCCGGTGTCGAAGCTTCTCACTCCGACTTTGATCGATAAATTGGAGAAATGTCGAATGGCTTCCTTCCAAATGGCCAAAAAGAAACTCCCCACCAAAACGCACCTATACGACCCGAGTCGCCGTCCGGCGGCGAAACTCGACGGCGGAGGAGTTCAATCGCCGGAGACTCAGGAGTTTCACCGGCTTGAAGACGACCACGTAGAGCAAATGATACAAGAGTTGCTTGATCTTGGCTCCTTTCACTTTTGCCCT

Coding sequence (CDS)

ATGGCGAGACCTCAACACAAGTACAGAGGAGTCCGGCAGCGCCATTGGGGCTCTTGGGTTTCTGAGATTCGCCACCCTTTGCTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCCGAAGACGCCGCTCGAGCTTACGAGGAAGCAGCCAGAATAATGTGTTGCCCTAATAATCTCTCCTCCAATCACAATGCACCACCTCAGTACTCCTCGTCCGCATCGGCGTCGGGGCCGGTGTCGAAGCTTCTCACTCCGACTTTGATCGATAAATTGGAGAAATGTCGAATGGCTTCCTTCCAAATGGCCAAAAAGAAACTCCCCACCAAAACGCACCTATACGACCCGAGTCGCCGTCCGGCGGCGAAACTCGACGGCGGAGGAGTTCAATCGCCGGAGACTCAGGAGTTTCACCGGCTTGAAGACGACCACGTAGAGCAAATGATACAAGAGTTGCTTGATCTTGGCTCCTTTCACTTTTGCCCT

Protein sequence

MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNLSSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYDPSRRPAAKLDGGGVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP

Homology

[Close]

BLAST of MS016242 vs. NCBI nr
Match: XP_022153447.1 (ethylene-responsive transcription factor ERF003-like, partial [Momordica charantia])

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-85
Identity = 157/162 (96.91%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAARIMCCPNNL
Sbjct: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYDPSRRP 120
           SSNHNAPPQYSSSAS  GPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHL D SRRP
Sbjct: 61  SSNHNAPPQYSSSASTLGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLSDRSRRP 120

Query: 121 AAKLDGGGVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP 163
           AAKLDGGGVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP
Sbjct: 121 AAKLDGGGVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP 162

[Close]

BLAST of MS016242 vs. NCBI nr
Match: KAG6606826.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 127/181 (70.17%), Postives = 133/181 (73.48%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYD----- 120
            +NHNAP     S SA  P S LLTPTLI+KL+KCR ASFQM KK+ P KTH  D     
Sbjct: 61  PTNHNAP---RHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 120

Query: 121 PSRRPAAKLDGG----GVQSPET----------QEFHRLEDDHVEQMIQELLDLGSFHFC 163
           PSRR     D G    GV  PET          QE  RLEDDHVEQMIQELLDLGSF FC
Sbjct: 121 PSRRQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFC 178

[Close]

BLAST of MS016242 vs. NCBI nr
Match: XP_022949239.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 127/181 (70.17%), Postives = 133/181 (73.48%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYD----- 120
            +NHNAP     S SA  P S LLTPTLI+KL+KCR ASFQM KK+ P KTH  D     
Sbjct: 61  PTNHNAP---RHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 120

Query: 121 PSRRPAAKLDGG----GVQSPET----------QEFHRLEDDHVEQMIQELLDLGSFHFC 163
           PSRR     D G    GV  PET          QE  RLEDDHVEQMIQELLDLGSF FC
Sbjct: 121 PSRRQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFC 178

[Close]

BLAST of MS016242 vs. NCBI nr
Match: KAG7036532.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 127/181 (70.17%), Postives = 133/181 (73.48%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAARIMCCPNNL
Sbjct: 22  MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 81

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYD----- 120
            +NHNAP     S SA  P S LLTPTLI+KL+KCR ASFQM KK+ P KTH  D     
Sbjct: 82  PTNHNAP---RHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 141

Query: 121 PSRRPAAKLDGG----GVQSPET----------QEFHRLEDDHVEQMIQELLDLGSFHFC 163
           PSRR     D G    GV  PET          QE  RLEDDHVEQMIQELLDLGSF FC
Sbjct: 142 PSRRQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFC 199

[Close]

BLAST of MS016242 vs. NCBI nr
Match: XP_023525763.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.2 bits (596), Expect = 8.0e-58
Identity = 125/181 (69.06%), Postives = 133/181 (73.48%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYD----- 120
            +NHN+P     S SA  P S LLTPTLI+KL+KCR ASFQM KK+ P KTH  D     
Sbjct: 61  PTNHNSP---RHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 120

Query: 121 PSRRPAAKLDGG----GVQSPET----------QEFHRLEDDHVEQMIQELLDLGSFHFC 163
           PSR     L+ G    GV  PET          QE  RLEDDHVEQMIQELLDLGSF FC
Sbjct: 121 PSRPHPTNLNDGYGASGVHLPETDAKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFC 178

[Close]

BLAST of MS016242 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-38
Identity = 96/186 (51.61%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCP--- 60
           MARPQ ++RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAAR+MC P   
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  NNLSSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYDPS 120
            N   N NA P  S         SKLL+ TL  KL KC MAS QM K+   T+T     +
Sbjct: 61  TNFPYNPNAIPTSS---------SKLLSATLTAKLHKCYMASLQMTKQ---TQTQTQTQT 120

Query: 121 RRPAAKLDGGGVQSPET----------------------QEFHRLEDDHVEQMIQELLDL 162
            R +   D  GV + E+                      Q F  LE+DH+EQMI+ELL  
Sbjct: 121 AR-SQSADSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHY 173

[Close]

BLAST of MS016242 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQ +YRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAY+EAAR+MC     
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMC---GT 60

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAK 105
            +  N P   ++S S+S   SKLL+ TLI KL +C MAS QM +
Sbjct: 61  RARTNFPYNPNASQSSS---SKLLSATLIAKLHRCYMASLQMTR 98

[Close]

BLAST of MS016242 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-20
Identity = 65/140 (46.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 7   KYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPN---NLSSN 66
           K+RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAY+EAA +M   N   N   N
Sbjct: 6   KFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLN 65

Query: 67  HNAPPQYS--------SSASASGPVSKLLTPTLIDKLEK-CRMASFQMAKKKLPT-KTHL 126
           +N   + S        SS  +S   S  L+  L  KL K C+  S  +   +L T  +H+
Sbjct: 66  NNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSHI 125

Query: 127 YDPSRRPAAKLDGGGVQSPE 134
               +R  +K D   V + E
Sbjct: 126 GVWQKRAGSKSDSSWVMTVE 145

[Close]

BLAST of MS016242 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 7  KYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNLSSNHNA 66
          K+RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAY++AA +M   N  S+  N 
Sbjct: 6  KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLM---NGQSAKTNF 65

Query: 67 PPQYSSSASASGPVSKLLTPTLIDKLEKCRM 98
          P   S+ +++    S L +P  + +L   ++
Sbjct: 66 PVIKSNGSNSLEINSALRSPKSLSELLNAKL 93

[Close]

BLAST of MS016242 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.1e-17
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 7  KYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNLSSNHNA 66
          K+RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAY++AA +M   N  ++  N 
Sbjct: 6  KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLM---NGQNAKTNF 65

Query: 67 PPQYSSSAS--ASGPVSKLLTPTLIDKLEKCRM 98
          P   S   S       S L++P  + +L   ++
Sbjct: 66 PVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKL 95

[Close]

BLAST of MS016242 vs. ExPASy TrEMBL
Match: A0A6J1DIX5 (ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3673 GN=LOC111020953 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 9.8e-86
Identity = 157/162 (96.91%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAARIMCCPNNL
Sbjct: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYDPSRRP 120
           SSNHNAPPQYSSSAS  GPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHL D SRRP
Sbjct: 61  SSNHNAPPQYSSSASTLGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLSDRSRRP 120

Query: 121 AAKLDGGGVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP 163
           AAKLDGGGVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP
Sbjct: 121 AAKLDGGGVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP 162

[Close]

BLAST of MS016242 vs. ExPASy TrEMBL
Match: A0A6J1GC95 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111452652 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 127/181 (70.17%), Postives = 133/181 (73.48%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYD----- 120
            +NHNAP     S SA  P S LLTPTLI+KL+KCR ASFQM KK+ P KTH  D     
Sbjct: 61  PTNHNAP---RHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 120

Query: 121 PSRRPAAKLDGG----GVQSPET----------QEFHRLEDDHVEQMIQELLDLGSFHFC 163
           PSRR     D G    GV  PET          QE  RLEDDHVEQMIQELLDLGSF FC
Sbjct: 121 PSRRQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFC 178

[Close]

BLAST of MS016242 vs. ExPASy TrEMBL
Match: A0A6J1KDM8 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111492899 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 9.6e-57
Identity = 125/181 (69.06%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNL 60
           MARPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAARIMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  SSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYD----- 120
            +N NA P +S SA    P S LLTPTLI+KL+KCR ASFQM KK+ P KTH  D     
Sbjct: 61  PTNRNA-PLHSLSAP---PPSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAH 120

Query: 121 PSRRPAAKLD----GGGVQSPET----------QEFHRLEDDHVEQMIQELLDLGSFHFC 163
           PSR     LD      GV  PET          QE  RLEDDHVEQMIQELLDLGSF FC
Sbjct: 121 PSRPQPTNLDDAYGSSGVHFPETDAKWVAGEEAQEIARLEDDHVEQMIQELLDLGSFEFC 177

[Close]

BLAST of MS016242 vs. ExPASy TrEMBL
Match: A0A1S3BY29 (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103494684 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54
Identity = 115/171 (67.25%), Postives = 130/171 (76.02%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCC-PNN 60
           M RPQ +YRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAY+EAA IMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 61  LSSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYDPSRR 120
           LS+NH+AP       S + P SKLLTPTLI+KL++CRMAS QM K +   +    DP++ 
Sbjct: 61  LSTNHSAP----HHPSPASPSSKLLTPTLIEKLQRCRMASLQMTKAQFAVRKSA-DPTQS 120

Query: 121 PAAKLDGG--------GVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP 163
           PA KL+GG         V S E +E  RLEDDHVEQMIQELLDLGSF FCP
Sbjct: 121 PATKLEGGHWPEKEARWVSSREVEEVRRLEDDHVEQMIQELLDLGSFEFCP 166

[Close]

BLAST of MS016242 vs. ExPASy TrEMBL
Match: A0A0A0KVJ4 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006210 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.9e-52
Identity = 115/171 (67.25%), Postives = 130/171 (76.02%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCC-PNN 60
           M RPQ +YRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAY+EAA IMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 61  LSSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYDPSRR 120
           LS+NH+A   + SSA  S   SKLLTPT I+KL++CRMAS QM K +   +    DP++ 
Sbjct: 61  LSTNHSA-SHHPSSAPLS---SKLLTPTSIEKLQRCRMASLQMTKAQFAVRKSA-DPTQS 120

Query: 121 PAAKLDGG--------GVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP 163
           PA KLDGG         V S E +E  RLED+HVEQMIQELLDLGSF FCP
Sbjct: 121 PATKLDGGHWPEKAARWVPSREVEEVRRLEDEHVEQMIQELLDLGSFEFCP 166

[Close]

BLAST of MS016242 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-39
Identity = 96/186 (51.61%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCP--- 60
           MARPQ ++RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAY+EAAR+MC P   
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  NNLSSNHNAPPQYSSSASASGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLYDPS 120
            N   N NA P  S         SKLL+ TL  KL KC MAS QM K+   T+T     +
Sbjct: 61  TNFPYNPNAIPTSS---------SKLLSATLTAKLHKCYMASLQMTKQ---TQTQTQTQT 120

Query: 121 RRPAAKLDGGGVQSPET----------------------QEFHRLEDDHVEQMIQELLDL 162
            R +   D  GV + E+                      Q F  LE+DH+EQMI+ELL  
Sbjct: 121 AR-SQSADSDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHY 173

[Close]

BLAST of MS016242 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-21
Identity = 65/140 (46.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 7   KYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPN---NLSSN 66
           K+RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAY+EAA +M   N   N   N
Sbjct: 6   KFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLN 65

Query: 67  HNAPPQYS--------SSASASGPVSKLLTPTLIDKLEK-CRMASFQMAKKKLPT-KTHL 126
           +N   + S        SS  +S   S  L+  L  KL K C+  S  +   +L T  +H+
Sbjct: 66  NNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSHI 125

Query: 127 YDPSRRPAAKLDGGGVQSPE 134
               +R  +K D   V + E
Sbjct: 126 GVWQKRAGSKSDSSWVMTVE 145

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BLAST of MS016242 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-18
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 7  KYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNLSSNHNA 66
          K+RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAY++AA +M   N  S+  N 
Sbjct: 6  KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLM---NGQSAKTNF 65

Query: 67 PPQYSSSASASGPVSKLLTPTLIDKLEKCRM 98
          P   S+ +++    S L +P  + +L   ++
Sbjct: 66 PVIKSNGSNSLEINSALRSPKSLSELLNAKL 93

[Close]

BLAST of MS016242 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 5.1e-18
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 0


Query: 7  KYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNLSSNHNA 66
          K+RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAY++AA +M   N  ++  N 
Sbjct: 6  KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLM---NGQNAKTNF 65

Query: 67 PPQYSSSAS--ASGPVSKLLTPTLIDKLEKCRM 98
          P   S   S       S L++P  + +L   ++
Sbjct: 66 PVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKL 95

[Close]

BLAST of MS016242 vs. TAIR 10
Match: AT5G25390.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 8.1e-16
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 7  KYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYEEAARIMCCPNNLSSNHNA 66
          K+RGVRQR WGSWVSEIRHPLL   +WLGTF+TAE AARAY++AA +M   N  S+  N 
Sbjct: 6  KFRGVRQRQWGSWVSEIRHPLL---VWLGTFDTAETAARAYDQAAVLM---NGQSAKTNF 65

Query: 67 PPQYSSSASASGPVSKLLTPTLIDKLEKCRM 98
          P   S+ +++    S L +P  + +L   ++
Sbjct: 66 PVIKSNGSNSLEINSALRSPKSLSELLNAKL 90

The following BLAST results are available for this feature:

BLAST of MS016242 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153447.1	2.0e-85	96.91	ethylene-responsive transcription factor ERF003-like, partial [Momordica charant...	[more]
KAG6606826.1	3.3e-59	70.17	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022949239.1	3.3e-59	70.17	ethylene-responsive transcription factor ERF003-like [Cucurbita moschata]	[more]
KAG7036532.1	3.3e-59	70.17	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_023525763.1	8.0e-58	69.06	ethylene-responsive transcription factor ERF003-like [Cucurbita pepo subsp. pepo...	[more]

BLAST of MS016242 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AW5	3.3e-38	51.61	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	4.0e-28	63.46	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]
Q9XI33	3.1e-20	46.43	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q3E958	2.5e-17	51.65	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LFN7	7.1e-17	51.61	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MS016242 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIX5	9.8e-86	96.91	ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3...	[more]
A0A6J1GC95	1.6e-59	70.17	ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KDM8	9.6e-57	69.06	ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661...	[more]
A0A1S3BY29	2.0e-54	67.25	ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KVJ4	1.9e-52	67.25	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006210 PE=...	[more]

BLAST of MS016242 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25190.1	2.3e-39	51.61	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	2.2e-21	46.43	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	1.7e-18	51.65	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	5.1e-18	51.61	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.1	8.1e-16	49.45	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 30..46 score: 70.91 coord: 8..19 score: 66.97
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 7..73 e-value: 8.8E-27 score: 105.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 7..52 e-value: 6.9E-11 score: 42.2
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 7..67 score: 18.399595
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 7..39 e-value: 6.63115E-19 score: 73.8451
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 6..65 e-value: 7.0E-20 score: 72.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..132
None	No IPR available	PANTHER	PTHR31194:SF48	ETHYLENE RESPONSE FACTOR	coord: 1..118 coord: 131..160
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..118 coord: 131..160
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 7..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016242.1	MS016242.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity