MS016192 (gene) Bitter gourd (TR) v1

Overview


Name	MS016192
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Glutamate--tRNA ligase
Location	scaffold9_2: 989815 .. 990168 (-)
RNA-Seq Expression	MS016192
Synteny	MS016192

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTGCTCAACAAAACCCAAAACCATGGACATGGATACGTCTCAGAGACCACTGGCCATGGCTTTGGCTCTTGCTTCTGCACTGCTGCTTTCTCCATTGAGATCCTTCGAAAGCAGCTCTGGATTTGTTCTTCCAATGCTTCTTATGGGGCTTGTAATTGCCATTAAGACGTCTTCATCTTCCTCTTCCTCATCCATGTCCACGCACAGAGGGGAGGGAGCTTCTGCAATTCTCTCTTCACATTCTTCTTGGGTTCTTAAAATTGGGACCTCCTCTTGGGGACTAGCTGGGACTTTGGTGATGTTGATTCTCCTACTTTATTGGCAAAACTCTGTGCAAGAATTCCTCTGGAGA

mRNA sequence

TTCTGCTCAACAAAACCCAAAACCATGGACATGGATACGTCTCAGAGACCACTGGCCATGGCTTTGGCTCTTGCTTCTGCACTGCTGCTTTCTCCATTGAGATCCTTCGAAAGCAGCTCTGGATTTGTTCTTCCAATGCTTCTTATGGGGCTTGTAATTGCCATTAAGACGTCTTCATCTTCCTCTTCCTCATCCATGTCCACGCACAGAGGGGAGGGAGCTTCTGCAATTCTCTCTTCACATTCTTCTTGGGTTCTTAAAATTGGGACCTCCTCTTGGGGACTAGCTGGGACTTTGGTGATGTTGATTCTCCTACTTTATTGGCAAAACTCTGTGCAAGAATTCCTCTGGAGA

Coding sequence (CDS)

TTCTGCTCAACAAAACCCAAAACCATGGACATGGATACGTCTCAGAGACCACTGGCCATGGCTTTGGCTCTTGCTTCTGCACTGCTGCTTTCTCCATTGAGATCCTTCGAAAGCAGCTCTGGATTTGTTCTTCCAATGCTTCTTATGGGGCTTGTAATTGCCATTAAGACGTCTTCATCTTCCTCTTCCTCATCCATGTCCACGCACAGAGGGGAGGGAGCTTCTGCAATTCTCTCTTCACATTCTTCTTGGGTTCTTAAAATTGGGACCTCCTCTTGGGGACTAGCTGGGACTTTGGTGATGTTGATTCTCCTACTTTATTGGCAAAACTCTGTGCAAGAATTCCTCTGGAGA

Protein sequence

FCSTKPKTMDMDTSQRPLAMALALASALLLSPLRSFESSSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR

Homology

[Close]

BLAST of MS016192 vs. NCBI nr
Match: KAG6581812.1 (hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-25
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 13  TSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMSTHR 72
           +SQRPLA+ LALASA++LSPLR +ES  SSGFVLP++L+ L+IAIKT  SSS SSMST R
Sbjct: 13  SSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKT--SSSCSSMSTDR 72

Query: 73  GEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR 119
            E  SAILSS  SWVLKIG+SSWGLAG L+MLI  L WQ+SV+EFLWR
Sbjct: 73  RERDSAILSSDPSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118

[Close]

BLAST of MS016192 vs. NCBI nr
Match: KAE8637311.1 (hypothetical protein CSA_023553, partial [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 78/124 (62.90%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 6   PKTMD--------MDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAI 65
           PK MD         ++SQRPLA+ LALASA++LSPLRS+E+  SSGFV+P++L+GL++AI
Sbjct: 1   PKIMDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAI 60

Query: 66  KTSSSSSSSSMSTHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQE 119
           KTSSS SS+S         SAIL S H SWVLKIG+SSWGLAG L+MLIL L WQ+SVQE
Sbjct: 61  KTSSSCSSTSRD-------SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQE 117

[Close]

BLAST of MS016192 vs. NCBI nr
Match: KAA0058525.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 6.1e-23
Identity = 73/113 (64.60%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 9   MDMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSM 68
           ++ ++S RPLA+ LALASA+ LSPLRS+E+  SSGFV+P++L+GL+IAIKTSS  SS+S 
Sbjct: 9   VNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTSSCCSSTSR 68

Query: 69  STHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR 119
                   SAIL S H SWVLKIG+SSWGLAG L+MLIL L WQ+SVQEFLWR
Sbjct: 69  D-------SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of MS016192 vs. NCBI nr
Match: KAF9689978.1 (hypothetical protein SADUNF_Sadunf01G0148300 [Salix dunnii])

HSP 1 Score: 117.5 bits (293), Expect = 8.0e-23
Identity = 72/114 (63.16%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 13  TSQRPLAMALALASALLLSPL------RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSS 72
           +SQR LAM LALASA++LSPL       ++E+  SSGFVLPM+L GL+IAI+T    +SS
Sbjct: 9   SSQRALAMVLALASAVVLSPLYVKRKNDNYETKWSSGFVLPMVLAGLIIAIRT----TSS 68

Query: 73  SMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR 119
           SMS HRG+ AS I S   SWVL+IG+SSWGLAG LVML+L+L WQ+SVQEF WR
Sbjct: 69  SMSVHRGDAASFIPSPDPSWVLRIGSSSWGLAGVLVMLVLVLSWQDSVQEFFWR 118

[Close]

BLAST of MS016192 vs. NCBI nr
Match: KAG5229029.1 (transcription initiation factor TFIID [Salix suchowensis])

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-22
Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 13  TSQRPLAMALALASALLLSPL------RSFES--SSGFVLPMLLMGLVIAIKTSSSSSSS 72
           +SQR LAMALALASA++LSPL       ++E+  +SGFVLPM+L GL+IAI+T    +SS
Sbjct: 9   SSQRALAMALALASAVVLSPLYVKRKNDNYETKWTSGFVLPMVLAGLIIAIRT----TSS 68

Query: 73  SMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR 119
           SMS H G+ AS I S   SWVL+IG+SSWGLAG LVML+L+L WQ+SVQEF WR
Sbjct: 69  SMSVHGGDAASFIPSPDPSWVLRIGSSSWGLAGVLVMLVLVLSWQDSVQEFFWR 118

[Close]

BLAST of MS016192 vs. ExPASy TrEMBL
Match: A0A0A0LEN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.0e-24
Identity = 74/112 (66.07%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 10  DMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSMS 69
           + ++SQRPLA+ LALASA++LSPLRS+E+  SSGFV+P++L+GL++AIKTSSS SS+S  
Sbjct: 10  NQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRD 69

Query: 70  THRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR 119
                  SAIL S H SWVLKIG+SSWGLAG L+MLIL L WQ+SVQEFLWR
Sbjct: 70  -------SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of MS016192 vs. ExPASy TrEMBL
Match: A0A5A7UY99 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001090 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.0e-23
Identity = 73/113 (64.60%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 9   MDMDTSQRPLAMALALASALLLSPLRSFES--SSGFVLPMLLMGLVIAIKTSSSSSSSSM 68
           ++ ++S RPLA+ LALASA+ LSPLRS+E+  SSGFV+P++L+GL+IAIKTSS  SS+S 
Sbjct: 9   VNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTSSCCSSTSR 68

Query: 69  STHRGEGASAIL-SSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR 119
                   SAIL S H SWVLKIG+SSWGLAG L+MLIL L WQ+SVQEFLWR
Sbjct: 69  D-------SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of MS016192 vs. ExPASy TrEMBL
Match: B9GKT9 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G168400 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.5e-22
Identity = 71/120 (59.17%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 12  DTSQRPLAMALALASALLLSPL-------------RSFESSSGFVLPMLLMGLVIAIKTS 71
           ++SQR LAM LALASA++LSPL                + SSGFVLPM+L GL+IAI+T 
Sbjct: 12  NSSQRALAMVLALASAVVLSPLYVKRKNDHTGYFNHETKWSSGFVLPMVLAGLIIAIRT- 71

Query: 72  SSSSSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR 119
              +SSSMS HRG  AS I S   SWVL+IG+SSWGLAG LVML+L+L WQ+SVQEF WR
Sbjct: 72  ---TSSSMSVHRGAAASFIPSPDPSWVLRIGSSSWGLAGVLVMLVLVLSWQDSVQEFFWR 127

[Close]

BLAST of MS016192 vs. ExPASy TrEMBL
Match: A0A6N2MX54 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS420295 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.3e-22
Identity = 74/117 (63.25%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 8   TMDMDTSQRPLAMALALASALLLSPL----RSFES--SSGFVLPMLLMGLVIAIKTSSSS 67
           T   ++SQR LAM LALASA++LSPL    R+ E+  SSGFVLPM+L GLVIAI+T    
Sbjct: 8   TASQNSSQRALAMVLALASAVVLSPLCVKRRTDETKWSSGFVLPMVLAGLVIAIRT---- 67

Query: 68  SSSSMSTHRGEGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNSVQEFLWR 119
           +SSSMS  RG  AS I S   SWVL+IG+SSWGLAG LVML L+L WQ+SVQEF WR
Sbjct: 68  TSSSMSVRRGCRASFIPSPDPSWVLRIGSSSWGLAGVLVMLTLVLSWQDSVQEFFWR 120

[Close]

BLAST of MS016192 vs. ExPASy TrEMBL
Match: A0A540KTD7 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_036964 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 9.5e-22
Identity = 73/127 (57.48%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 6   PKTMDMDTSQRPLAMALALASALLLSPL----------RSFES--SSGFVLPMLLMGLVI 65
           P T    +SQR +AM LAL SA++LSP+          R  E+  SSGFVLPM+L GL+I
Sbjct: 12  PYTSQNSSSQRSVAMVLALVSAIVLSPIYTNPRKSSDARYHEAKWSSGFVLPMILAGLII 71

Query: 66  AIKTSSSSSSSSMSTHRG--EGASAILSSHSSWVLKIGTSSWGLAGTLVMLILLLYWQNS 119
           AIKT+SSSSSSS +T      G S+I SS  SWVL+IG+SSWGLAG LVML+ +L WQ S
Sbjct: 72  AIKTTSSSSSSSSATSLSSTRGDSSIASSDPSWVLRIGSSSWGLAGVLVMLMFVLSWQGS 131

The following BLAST results are available for this feature:

BLAST of MS016192 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581812.1	2.2e-25	71.30	hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8637311.1	2.5e-24	62.90	hypothetical protein CSA_023553, partial [Cucumis sativus]	[more]
KAA0058525.1	6.1e-23	64.60	putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative t...	[more]
KAF9689978.1	8.0e-23	63.16	hypothetical protein SADUNF_Sadunf01G0148300 [Salix dunnii]	[more]
KAG5229029.1	4.0e-22	62.28	transcription initiation factor TFIID [Salix suchowensis]	[more]

BLAST of MS016192 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016192 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEN3	2.0e-24	66.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1	[more]
A0A5A7UY99	3.0e-23	64.60	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
B9GKT9	2.5e-22	59.17	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G168400 PE=4 ...	[more]
A0A6N2MX54	7.3e-22	63.25	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS420295 PE=4 SV=...	[more]
A0A540KTD7	9.5e-22	57.48	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_036964 PE=4 SV=1	[more]

BLAST of MS016192 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	TRANSMEMBRANE PROTEIN	coord: 9..118
None	No IPR available	PANTHER	PTHR35758:SF1	SERINE RICH PROTEIN	coord: 9..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016192.1	MS016192.1	mRNA