MS016186 (gene) Bitter gourd (TR) v1

Overview


Name	MS016186
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	D-3-phosphoglycerate dehydrogenase
Location	scaffold9_2: 947374 .. 947808 (-)
RNA-Seq Expression	MS016186
Synteny	MS016186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAGATTAAATTACTGACCGGCTTTCATGGAGGCGTCGGCCTGAGCGACGTTTCGGGCCATGGCGGTAAGCAAGGCGATTCCGTGCTCGGCGGCGGCGATGGTGTTGGCAGTTGGGGCATTAACAACGAGACAACCGAACTCGGTGGCGGCCTGCAGATCCACATTGTCGATGCCGACGCCGGCCCTTCCGACGACCTTCAACCGCCCTTTGGCCGCCTCGAATACGTGCCTGCTCACCTTCGTCCCACTCCGCACGACCAACGCGTCAAACGAAGAGATCTTCGCGCAGAGCTCCTCCGGCGACAACTCATAAGCGCACTCCACGTTCCCGAAGCTCCGCAGAAGTTGGAGACCCGCCTCTCCAAGTTTCTCGGCCACCAAAATCGCCGATCTCGAAGTGGGGTCCACCGGATCAGAGTTCCGAACCCCAAA

mRNA sequence

AAACAGATTAAATTACTGACCGGCTTTCATGGAGGCGTCGGCCTGAGCGACGTTTCGGGCCATGGCGGTAAGCAAGGCGATTCCGTGCTCGGCGGCGGCGATGGTGTTGGCAGTTGGGGCATTAACAACGAGACAACCGAACTCGGTGGCGGCCTGCAGATCCACATTGTCGATGCCGACGCCGGCCCTTCCGACGACCTTCAACCGCCCTTTGGCCGCCTCGAATACGTGCCTGCTCACCTTCGTCCCACTCCGCACGACCAACGCGTCAAACGAAGAGATCTTCGCGCAGAGCTCCTCCGGCGACAACTCATAAGCGCACTCCACGTTCCCGAAGCTCCGCAGAAGTTGGAGACCCGCCTCTCCAAGTTTCTCGGCCACCAAAATCGCCGATCTCGAAGTGGGGTCCACCGGATCAGAGTTCCGAACCCCAAA

Coding sequence (CDS)

AAACAGATTAAATTACTGACCGGCTTTCATGGAGGCGTCGGCCTGAGCGACGTTTCGGGCCATGGCGGTAAGCAAGGCGATTCCGTGCTCGGCGGCGGCGATGGTGTTGGCAGTTGGGGCATTAACAACGAGACAACCGAACTCGGTGGCGGCCTGCAGATCCACATTGTCGATGCCGACGCCGGCCCTTCCGACGACCTTCAACCGCCCTTTGGCCGCCTCGAATACGTGCCTGCTCACCTTCGTCCCACTCCGCACGACCAACGCGTCAAACGAAGAGATCTTCGCGCAGAGCTCCTCCGGCGACAACTCATAAGCGCACTCCACGTTCCCGAAGCTCCGCAGAAGTTGGAGACCCGCCTCTCCAAGTTTCTCGGCCACCAAAATCGCCGATCTCGAAGTGGGGTCCACCGGATCAGAGTTCCGAACCCCAAA

Protein sequence

KQIKLLTGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDDLQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLGHQNRRSRSGVHRIRVPNPK

Homology

[Close]

BLAST of MS016186 vs. NCBI nr
Match: KYP75325.1 (hypothetical protein KK1_008046, partial [Cajanus cajan])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-20
Identity = 59/124 (47.58%), Postives = 84/124 (67.74%), Query Frame = 0


Query: 7   TGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDD 66
           T   G VGLSDVSGHGG++ D+VLGGGDGVG   IN++   LGGG +I ++D+DAG S+D
Sbjct: 1   TSLDGRVGLSDVSGHGGEERDAVLGGGDGVGGGSINDQAAMLGGGGEIDVIDSDAGSSND 60

Query: 67  LQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLG 126
           L+   G LE +   L     D+ V  RDL AELL  +++ A+HV E  ++L+ R+++ L 
Sbjct: 61  LESAGGGLEDLARDLGAAADDEGVAERDLSAELLGAEVVGAIHVGEVLEQLQPRVAELLR 120

Query: 127 HQNR 131
           H++R
Sbjct: 121 HEHR 124

[Close]

BLAST of MS016186 vs. NCBI nr
Match: RDX79026.1 (hypothetical protein CR513_40599, partial [Mucuna pruriens])

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-19
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 0


Query: 13  VGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDDLQPPFG 72
           VGL DV GH G++ D VLGGGDGVGS  I+++   LGGG QI ++D+DAG + DL+P  G
Sbjct: 183 VGLGDVPGHSGEERDPVLGGGDGVGSGRIDDQAAMLGGGGQIDVIDSDAGSAYDLEPAGG 242

Query: 73  RLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLGHQNRRS 132
            LE +   L    HD+RV  RDL AE L  +++ A+HV E  QKL+   ++ L  Q+RR 
Sbjct: 243 GLEDLARDLGAAAHDERVAERDLCAEFLGTEVVGAIHVGEVLQKLQPCFAQLLRDQHRRL 302

Query: 133 R 134
           R
Sbjct: 303 R 303

[Close]

BLAST of MS016186 vs. NCBI nr
Match: THU72335.1 (hypothetical protein C4D60_Mb04t11010 [Musa balbisiana])

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-17
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 7   TGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDD 66
           T FHGGV   DVSGHGG+Q D + G G  V    ++NE   L GG ++HIVD D G  DD
Sbjct: 17  TRFHGGVRSRDVSGHGGEQSDPMFGSGHRVRGGRVDNEAAMLSGGGEVHIVDPDPGAPDD 76

Query: 67  LQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLG 126
            +P  G LE V A L   PHD+ V  RDL  ELL  +++ A+ V EA ++++   ++FLG
Sbjct: 77  PKPTAGGLEDVAADLGAAPHDESVAERDLGTELLGGEVVGAVDVREALEEVQPTPAEFLG 136

Query: 127 HQN 130
            Q+
Sbjct: 137 DQD 139

[Close]

BLAST of MS016186 vs. NCBI nr
Match: CAA2631056.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 94.4 bits (233), Expect = 8.9e-16
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 6   LTGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSD 65
           LT  HGGV L  V GHGG Q D V    D V   G++++  EL G L+I++VDA++  +D
Sbjct: 25  LTRLHGGVCLRHVPGHGGHQRDPVFRSSDSVRRRGVDHKAAELSGSLKINVVDANSSSAD 84

Query: 66  DLQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISAL 109
           D QPP   L+++P HL P PHDQRV   DL AELL  QL S L
Sbjct: 85  DFQPPLRGLKHLPRHLGPAPHDQRVAEGDLGAELLLGQLYSQL 127

[Close]

BLAST of MS016186 vs. NCBI nr
Match: NP_001117302.1 (hypothetical protein AT1G17744 [Arabidopsis thaliana] >AAK76725.1 unknown protein [Arabidopsis thaliana] >AAM91738.1 unknown protein [Arabidopsis thaliana] >AEE29629.1 hypothetical protein AT1G17744 [Arabidopsis thaliana] >CAA0215547.1 unnamed protein product [Arabidopsis thaliana] >VYS46410.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-15
Identity = 49/125 (39.20%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 7   TGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDD 66
           TGF+  VGLS+V+ H  KQ +S+ G    +  W IN++T  L   LQI+IV+ ++G SD 
Sbjct: 7   TGFNRSVGLSNVTCHRSKQSNSMFGSSHRISRWSINHQTPVLRRRLQINIVNPNSGSSDH 66

Query: 67  LQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLG 126
            QPP  RL++ P H     HDQ V  R    ++ RR+++ A++V E P+++    S+FLG
Sbjct: 67  FQPPLRRLKHFPRHFSSASHDQSVTLRHFLLQIFRRKIVRAVNVAEFPEEIHAGFSQFLG 126

Query: 127 HQNRR 132
            ++ R
Sbjct: 127 DEDPR 131

[Close]

BLAST of MS016186 vs. ExPASy TrEMBL
Match: A0A2P2IX24 (D-3-phosphoglycerate dehydrogenase OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 62/123 (50.41%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 7   TGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDD 66
           TGFHGG+ L ++  HG +QGD +L   + V SWG++++  +LGG LQIH+V+  A  S  
Sbjct: 13  TGFHGGISLCNIPCHGSEQGDPMLCSCNSVSSWGVDHQAAKLGGSLQIHVVNPHASSSHH 72

Query: 67  LQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLG 126
           LQPP   L+++P+HL   P+DQR+ RRDL A+LLRR +I A+HV +A QKL+T +SK LG
Sbjct: 73  LQPPLSGLKHLPSHLCAAPYDQRIARRDLLAKLLRRDIIGAVHVAKAAQKLKTLVSKLLG 132

Query: 127 HQN 130
            Q+
Sbjct: 133 DQD 135

[Close]

BLAST of MS016186 vs. ExPASy TrEMBL
Match: A0A151U7N4 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008046 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 9.9e-21
Identity = 59/124 (47.58%), Postives = 84/124 (67.74%), Query Frame = 0


Query: 7   TGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDD 66
           T   G VGLSDVSGHGG++ D+VLGGGDGVG   IN++   LGGG +I ++D+DAG S+D
Sbjct: 1   TSLDGRVGLSDVSGHGGEERDAVLGGGDGVGGGSINDQAAMLGGGGEIDVIDSDAGSSND 60

Query: 67  LQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLG 126
           L+   G LE +   L     D+ V  RDL AELL  +++ A+HV E  ++L+ R+++ L 
Sbjct: 61  LESAGGGLEDLARDLGAAADDEGVAERDLSAELLGAEVVGAIHVGEVLEQLQPRVAELLR 120

Query: 127 HQNR 131
           H++R
Sbjct: 121 HEHR 124

[Close]

BLAST of MS016186 vs. ExPASy TrEMBL
Match: A0A371FL44 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_40599 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.2e-19
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 0


Query: 13  VGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDDLQPPFG 72
           VGL DV GH G++ D VLGGGDGVGS  I+++   LGGG QI ++D+DAG + DL+P  G
Sbjct: 183 VGLGDVPGHSGEERDPVLGGGDGVGSGRIDDQAAMLGGGGQIDVIDSDAGSAYDLEPAGG 242

Query: 73  RLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLGHQNRRS 132
            LE +   L    HD+RV  RDL AE L  +++ A+HV E  QKL+   ++ L  Q+RR 
Sbjct: 243 GLEDLARDLGAAAHDERVAERDLCAEFLGTEVVGAIHVGEVLQKLQPCFAQLLRDQHRRL 302

Query: 133 R 134
           R
Sbjct: 303 R 303

[Close]

BLAST of MS016186 vs. ExPASy TrEMBL
Match: A0A4V4H9N8 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t11010 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 7   TGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDD 66
           T FHGGV   DVSGHGG+Q D + G G  V    ++NE   L GG ++HIVD D G  DD
Sbjct: 17  TRFHGGVRSRDVSGHGGEQSDPMFGSGHRVRGGRVDNEAAMLSGGGEVHIVDPDPGAPDD 76

Query: 67  LQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLG 126
            +P  G LE V A L   PHD+ V  RDL  ELL  +++ A+ V EA ++++   ++FLG
Sbjct: 77  PKPTAGGLEDVAADLGAAPHDESVAERDLGTELLGGEVVGAVDVREALEEVQPTPAEFLG 136

Query: 127 HQN 130
            Q+
Sbjct: 137 DQD 139

[Close]

BLAST of MS016186 vs. ExPASy TrEMBL
Match: A0A7I8JJJ4 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_13016702 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 6   LTGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSD 65
           LT  HGGV L  V GHGG Q D V    D V   G++++  EL G L+I++VDA++  +D
Sbjct: 25  LTRLHGGVCLRHVPGHGGHQRDPVFRSSDSVRRRGVDHKAAELSGSLKINVVDANSSSAD 84

Query: 66  DLQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISAL 109
           D QPP   L+++P HL P PHDQRV   DL AELL  QL S L
Sbjct: 85  DFQPPLRGLKHLPRHLGPAPHDQRVAEGDLGAELLLGQLYSQL 127

[Close]

BLAST of MS016186 vs. TAIR 10
Match: AT1G17744.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-19
Identity = 49/125 (39.20%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 7   TGFHGGVGLSDVSGHGGKQGDSVLGGGDGVGSWGINNETTELGGGLQIHIVDADAGPSDD 66
           TGF+  VGLS+V+ H  KQ +S+ G    +  W IN++T  L   LQI+IV+ ++G SD 
Sbjct: 7   TGFNRSVGLSNVTCHRSKQSNSMFGSSHRISRWSINHQTPVLRRRLQINIVNPNSGSSDH 66

Query: 67  LQPPFGRLEYVPAHLRPTPHDQRVKRRDLRAELLRRQLISALHVPEAPQKLETRLSKFLG 126
            QPP  RL++ P H     HDQ V  R    ++ RR+++ A++V E P+++    S+FLG
Sbjct: 67  FQPPLRRLKHFPRHFSSASHDQSVTLRHFLLQIFRRKIVRAVNVAEFPEEIHAGFSQFLG 126

Query: 127 HQNRR 132
            ++ R
Sbjct: 127 DEDPR 131

The following BLAST results are available for this feature:

BLAST of MS016186 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP75325.1	2.0e-20	47.58	hypothetical protein KK1_008046, partial [Cajanus cajan]	[more]
RDX79026.1	6.6e-19	48.76	hypothetical protein CR513_40599, partial [Mucuna pruriens]	[more]
THU72335.1	3.6e-17	45.53	hypothetical protein C4D60_Mb04t11010 [Musa balbisiana]	[more]
CAA2631056.1	8.9e-16	50.49	unnamed protein product [Spirodela intermedia]	[more]
NP_001117302.1	3.4e-15	39.20	hypothetical protein AT1G17744 [Arabidopsis thaliana] >AAK76725.1 unknown protei...	[more]

BLAST of MS016186 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2IX24	1.3e-25	50.41	D-3-phosphoglycerate dehydrogenase OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A151U7N4	9.9e-21	47.58	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008046 PE=4 S...	[more]
A0A371FL44	3.2e-19	48.76	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_40599 P...	[more]
A0A4V4H9N8	1.7e-17	45.53	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t11010 PE=4 SV=...	[more]
A0A7I8JJJ4	4.3e-16	50.49	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_13016702 PE=4 SV...	[more]

BLAST of MS016186 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17744.1	3.1e-19	39.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016186.1	MS016186.1	mRNA