MS016149 (gene) Bitter gourd (TR) v1

Overview


Name	MS016149
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold9_2: 697054 .. 697257 (+)
RNA-Seq Expression	MS016149
Synteny	MS016149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACTTCTTTATCTTTTGAGTTGTTCTGCCAGATCGGTCGTTCAAGACCTTTGGTCTCTACTCGGACCCGATGAAAAAAATGGAATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCACTCTGTTGGGATCTTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGAT

mRNA sequence

ATACTTCTTTATCTTTTGAGTTGTTCTGCCAGATCGGTCGTTCAAGACCTTTGGTCTCTACTCGGACCCGATGAAAAAAATGGAATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCACTCTGTTGGGATCTTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGAT

Coding sequence (CDS)

ATACTTCTTTATCTTTTGAGTTGTTCTGCCAGATCGGTCGTTCAAGACCTTTGGTCTCTACTCGGACCCGATGAAAAAAATGGAATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCACTCTGTTGGGATCTTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGAT

Protein sequence

ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEKDCSRFDND

Homology

[Close]

BLAST of MS016149 vs. NCBI nr
Match: QIT04093.1 (Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX48604.1 hypothetical chloroplast RF21 [Luffa aegyptiaca] >QKX48623.1 hypothetical chloroplast RF21 [Luffa aegyptiaca])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1949 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2008

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2009 DCSRFDND 2016

[Close]

BLAST of MS016149 vs. NCBI nr
Match: YP_009752370.1 (Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata] >QIT04344.1 Ycf2 protein [Bryonia marmorata] >QIT04362.1 Ycf2 protein [Bryonia marmorata])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1949 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2008

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2009 DCSRFDND 2016

[Close]

BLAST of MS016149 vs. NCBI nr
Match: QJR53001.1 (hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical protein RF2 [Herpetospermum pedunculosum])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1951 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2010

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2011 DCSRFDND 2018

[Close]

BLAST of MS016149 vs. NCBI nr
Match: YP_010131137.1 (hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75785.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75802.1 hypothetical protein RF2 [Benincasa hispida] >QSQ72354.1 Ycf2 protein [Benincasa hispida] >QSQ72372.1 Ycf2 protein [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1951 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2010

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2011 DCSRFDND 2018

[Close]

BLAST of MS016149 vs. NCBI nr
Match: YP_009752033.1 (Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys macranthus] >QIT05274.1 Ycf2 protein [Cionosicys macranthus] >QIT05292.1 Ycf2 protein [Cionosicys macranthus])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1971 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2030

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2031 DCSRFDND 2038

[Close]

BLAST of MS016149 vs. ExPASy Swiss-Prot
Match: Q8S8V2 (Protein Ycf2 A OS=Atropa belladonna OX=33113 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-29
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEK
Sbjct: 1961 ILLYLLSCSAGSVAQDLWSLSGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEK 2020

Query: 61   DCSRFDND 69
            DCS+FDND
Sbjct: 2021 DCSQFDND 2028

[Close]

BLAST of MS016149 vs. ExPASy Swiss-Prot
Match: Q8S8U1 (Protein Ycf2 B OS=Atropa belladonna OX=33113 GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-29
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEK
Sbjct: 1961 ILLYLLSCSAGSVAQDLWSLSGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEK 2020

Query: 61   DCSRFDND 69
            DCS+FDND
Sbjct: 2021 DCSQFDND 2028

[Close]

BLAST of MS016149 vs. ExPASy Swiss-Prot
Match: Q3C1N4 (Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-29
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEK
Sbjct: 1950 ILLYLLSCSAGSVAQDLWSLSGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEK 2009

Query: 61   DCSRFDND 69
            DCS+FDND
Sbjct: 2010 DCSQFDND 2017

[Close]

BLAST of MS016149 vs. ExPASy Swiss-Prot
Match: Q33BV3 (Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-29
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEK
Sbjct: 1950 ILLYLLSCSAGSVAQDLWSLSGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEK 2009

Query: 61   DCSRFDND 69
            DCS+FDND
Sbjct: 2010 DCSQFDND 2017

[Close]

BLAST of MS016149 vs. ExPASy Swiss-Prot
Match: P09976 (Protein Ycf2 OS=Nicotiana tabacum OX=4097 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-29
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SV QDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG L+GSSRTEK
Sbjct: 1950 ILLYLLSCSAGSVAQDLWSLSGPDEKNGITSYGLVENDSDLVHGLLEVEGALVGSSRTEK 2009

Query: 61   DCSRFDND 69
            DCS+FDND
Sbjct: 2010 DCSQFDND 2017

[Close]

BLAST of MS016149 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.7e-28
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1947 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2006

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2007 DCSRFDND 2014

[Close]

BLAST of MS016149 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.7e-28
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1946 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2005

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2006 DCSRFDND 2013

[Close]

BLAST of MS016149 vs. ExPASy TrEMBL
Match: A0A6H0EV63 (Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.7e-28
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1957 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2016

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2017 DCSRFDND 2024

[Close]

BLAST of MS016149 vs. ExPASy TrEMBL
Match: A0A6M3RUH1 (Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.7e-28
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1949 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2008

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2009 DCSRFDND 2016

[Close]

BLAST of MS016149 vs. ExPASy TrEMBL
Match: A0A6H0ESM3 (Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.7e-28
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SVVQDLWSL GPDEKNGITSYGLVENDSDLVHGLLEVEG LLGSSRTEK
Sbjct: 1949 ILLYLLSCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEK 2008

Query: 61   DCSRFDND 69
            DCSRFDND
Sbjct: 2009 DCSRFDND 2016

[Close]

BLAST of MS016149 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-27
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SV QDLWSL  PDEKN ITSYG VENDSDLVHGLLEV+G L+GSSRTEK
Sbjct: 1961 ILLYLLSCSAGSVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGSSRTEK 2020

Query: 61   DCSRFDND 69
            DCS+FDND
Sbjct: 2021 DCSQFDND 2028

[Close]

BLAST of MS016149 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-27
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1    ILLYLLSCSARSVVQDLWSLLGPDEKNGITSYGLVENDSDLVHGLLEVEGTLLGSSRTEK 60
            ILLYLLSCSA SV QDLWSL  PDEKN ITSYG VENDSDLVHGLLEV+G L+GSSRTEK
Sbjct: 1961 ILLYLLSCSAGSVAQDLWSLPVPDEKNRITSYGFVENDSDLVHGLLEVQGALVGSSRTEK 2020

Query: 61   DCSRFDND 69
            DCS+FDND
Sbjct: 2021 DCSQFDND 2028

The following BLAST results are available for this feature:

BLAST of MS016149 vs. NCBI nr


Match Name	E-value	Identity	Description
QIT04093.1	1.4e-27	95.59	Ycf2 protein [Luffa aegyptiaca] >QIT04110.1 Ycf2 protein [Luffa aegyptiaca] >QKX...	[more]
YP_009752370.1	1.4e-27	95.59	Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata...	[more]
QJR53001.1	1.4e-27	95.59	hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical ...	[more]
YP_010131137.1	1.4e-27	95.59	hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protei...	[more]
YP_009752033.1	1.4e-27	95.59	Ycf2 protein [Cionosicys macranthus] >YP_009752051.1 Ycf2 protein [Cionosicys ma...	[more]

BLAST of MS016149 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8V2	2.6e-29	91.18	Protein Ycf2 A OS=Atropa belladonna OX=33113 GN=ycf2-A PE=3 SV=1	[more]
Q8S8U1	2.6e-29	91.18	Protein Ycf2 B OS=Atropa belladonna OX=33113 GN=ycf2-B PE=3 SV=1	[more]
Q3C1N4	2.6e-29	91.18	Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1	[more]
Q33BV3	2.6e-29	91.18	Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1	[more]
P09976	2.6e-29	91.18	Protein Ycf2 OS=Nicotiana tabacum OX=4097 GN=ycf2-A PE=3 SV=2	[more]

BLAST of MS016149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A343F2F1	6.7e-28	95.59	Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ET42	6.7e-28	95.59	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EV63	6.7e-28	95.59	Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1	[more]
A0A6M3RUH1	6.7e-28	95.59	Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ESM3	6.7e-28	95.59	Protein Ycf2 OS=Trichosanthes tubiflora OX=1144424 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS016149 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.5e-27	85.29	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.5e-27	85.29	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078:SF64	PROTEIN YCF2	coord: 1..68
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016149.1	MS016149.1	mRNA