MS016139 (gene) Bitter gourd (TR) v1

Overview


Name	MS016139
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transmembrane 9 superfamily member
Location	scaffold9_2: 619353 .. 619637 (-)
RNA-Seq Expression	MS016139
Synteny	MS016139

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCGATTTTGGAAATCGACGCCGGCGATGTGTTCGTCAAAATCGCCATGTTCGTCTTCGTTCAGCTTCTGGTGTATCTGATCCTCTCCAAATCCTCAAATATGTTCTCCAAGGACCAGAAATTGAGATCTCTCAGCTTCAAGCCCGCTCGATCCGTCAGTATTCGCCGCTTTCTCGCCGCGCTTTCCGATTTGCCTCCCGGCGGCGAGCTCTCTCCGTCGCCCAAACCTCCGACGCCGTCCTCCGCTCGCCGGGATCGATCCGACGACGCCGGCAGATCT

mRNA sequence

ATGATGCCGATTTTGGAAATCGACGCCGGCGATGTGTTCGTCAAAATCGCCATGTTCGTCTTCGTTCAGCTTCTGGTGTATCTGATCCTCTCCAAATCCTCAAATATGTTCTCCAAGGACCAGAAATTGAGATCTCTCAGCTTCAAGCCCGCTCGATCCGTCAGTATTCGCCGCTTTCTCGCCGCGCTTTCCGATTTGCCTCCCGGCGGCGAGCTCTCTCCGTCGCCCAAACCTCCGACGCCGTCCTCCGCTCGCCGGGATCGATCCGACGACGCCGGCAGATCT

Coding sequence (CDS)

ATGATGCCGATTTTGGAAATCGACGCCGGCGATGTGTTCGTCAAAATCGCCATGTTCGTCTTCGTTCAGCTTCTGGTGTATCTGATCCTCTCCAAATCCTCAAATATGTTCTCCAAGGACCAGAAATTGAGATCTCTCAGCTTCAAGCCCGCTCGATCCGTCAGTATTCGCCGCTTTCTCGCCGCGCTTTCCGATTTGCCTCCCGGCGGCGAGCTCTCTCCGTCGCCCAAACCTCCGACGCCGTCCTCCGCTCGCCGGGATCGATCCGACGACGCCGGCAGATCT

Protein sequence

MMPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSPKPPTPSSARRDRSDDAGRS

Homology

[Close]

BLAST of MS016139 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 9.9e-32
Identity = 79/94 (84.04%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MMPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFL 60
          M PI + DAG++FV+IAMFVF+QLLVYLILSKSSN+FS DQK+RSLSFKPARSVSIRRFL
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPKPPTPSSARRDRSDDAGR 95
          AALSDLPPGGELSPS K  TPSSARRDRSDD GR
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR 94

[Close]

BLAST of MS016139 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 5.4e-30
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MMPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFL 60
          M PILE D  ++FVKIAMF FVQLLVYLILSKSSN+FS DQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPKPPTPSSARRDRSDDAGR 95
          AALSDLPPGGE+SP+P+  TPSS RRD SDD GR
Sbjct: 61 AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGR 94

[Close]

BLAST of MS016139 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 5.1e-28
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MMPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFL 60
          M+ ILE D   +F+KIAMFVFVQ+LVYLILSKSSN+FS D+KLRSLSFKPARSVSIRR L
Sbjct: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSPKPPTPSSARRDRSDDAGR 95
          AALSDLPPGGELSPS    TPSS RR+RSDD+GR
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGR 94

[Close]

BLAST of MS016139 vs. NCBI nr
Match: KAG6606858.1 (hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036564.1 hypothetical protein SDJN02_00183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MMPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFL 60
          MMPILEIDAG+ FVKIAMF+ VQLLVY ILS+SS++FSKDQKL+SLSFKPARSVSIRRFL
Sbjct: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPKPPTPSSARRDRSDDAGR 95
          AALSD+P GGELSPS +  TPS   R+ SDD GR
Sbjct: 61 AALSDMPSGGELSPSSRVRTPSPIHREHSDDGGR 94

[Close]

BLAST of MS016139 vs. NCBI nr
Match: KAG6581607.1 (hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-27
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MMPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFL 60
          M+ ILE D   +F+KIAMFVFVQ+LVYLILSKSSN+FS D+KLRSLSFKPARSVSIRR L
Sbjct: 1  MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSPKPPTPSSARRDRSDDA 93
          AALSDLPPGGELSPS    TPSS RR+RSDD+
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDS 92

[Close]

BLAST of MS016139 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MMPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFL 60
          M PI E DAG++FV+IAMFVFVQLLVYLILSKSSN+FS DQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPKPPTPSSARRDRSDD 92
          AALSDLPPGGELS       PSS RR RSDD
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDD 84

[Close]

BLAST of MS016139 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 74/91 (81.32%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MMPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFL 60
          M PI E DAG++FV+IAMFVFVQLLVYLILSKSSN+FS DQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSPKPPTPSSARRDRSDD 92
          AALSDLPPGGELS       PSS RR RSDD
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDD 84

[Close]

BLAST of MS016139 vs. ExPASy TrEMBL
Match: A0A218WLF6 (uncharacterized protein LOC116198835 OS=Punica granatum OX=22663 GN=LOC116198835 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 10 GDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFLAALSDLPPG 69
          GDV +K+ MFV VQ LVYLILSKSS++FSKD+  +SLSF+P RSVSIRRF+AALSD+P G
Sbjct: 10 GDVLLKVGMFVLVQALVYLILSKSSDVFSKDKAKKSLSFRPVRSVSIRRFMAALSDMPAG 69

Query: 70 GELSPSPK-PPTPSSARRD 88
          GE SPSP+ PP+ ++   D
Sbjct: 70 GEPSPSPRSPPSLTTTHED 88

[Close]

BLAST of MS016139 vs. ExPASy TrEMBL
Match: B9REM2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1775700 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 2  MPILEIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFLA 61
          M I+E   GD+ +K+AMF  VQ LVY+ILSKSSN+FS   K RS SFKPARSVSIRRFLA
Sbjct: 1  MMIMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLA 60

Query: 62 ALSDLPPGGELSPSPKPP 80
          AL DLP  GELSPSPK P
Sbjct: 61 ALQDLPASGELSPSPKNP 77

[Close]

BLAST of MS016139 vs. ExPASy TrEMBL
Match: A0A438IA56 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_028841 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.2e-16
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 6  EIDAGDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKLRSLSFKPARSVSIRRFLAALSD 65
          E    D+ +K+ MFV VQ LVYLILSKSSN+FSK+ K RS  FKPARSVSIRR LA L+D
Sbjct: 4  ESSLADMVLKVGMFVLVQALVYLILSKSSNIFSKNPK-RSHRFKPARSVSIRRVLACLAD 63

Query: 66 LPPGGELSPSPKPPTP 82
          LPPGGELSPSP P  P
Sbjct: 64 LPPGGELSPSPSPKGP 78

[Close]

BLAST of MS016139 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-12
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 10 GDVFVKIAMFVFVQLLVYLILSKSSNMFSKDQKL-RSLSFKPARSVSIRRFLAALSDLPP 69
          G + +K+A+F  VQ LVYLIL KSS +F++   L R+ SF+P RSVSIRR LAAL D+P 
Sbjct: 6  GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65

Query: 70 GGELSPSPKPPTPSS 84
          G ++SPS    + SS
Sbjct: 66 GDDMSPSSNGSSSSS 80

[Close]

BLAST of MS016139 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 12 VFVKIAMFVFVQLLVYLILSKSSNMFSKDQKL-RSLSFKPARSVSIRRFLAALSDLPPGG 71
          + +K+++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GG
Sbjct: 8  MLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGG 67

Query: 72 ELSPSPKPPTPSSARRDRSD 91
          E+SPS   P+ +S+    S+
Sbjct: 68 EMSPSAMGPSLASSLSSPSE 87

The following BLAST results are available for this feature:

BLAST of MS016139 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651805.2	9.9e-32	84.04	uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
XP_038905322.1	5.4e-30	81.91	uncharacterized protein LOC120091388 [Benincasa hispida]	[more]
KAG7018107.1	5.1e-28	78.72	hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6606858.1	1.1e-27	77.66	hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6581607.1	9.6e-27	78.26	hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS016139 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016139 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC63	1.0e-26	81.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFW1	1.0e-26	81.32	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
A0A218WLF6	1.6e-16	65.82	uncharacterized protein LOC116198835 OS=Punica granatum OX=22663 GN=LOC116198835...	[more]
B9REM2	1.6e-16	70.51	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1775700 PE=4 SV=1	[more]
A0A438IA56	8.2e-16	69.74	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_028841 PE=4 SV=1	[more]

BLAST of MS016139 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31945.1	5.4e-12	53.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G05575.1	2.1e-11	48.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..95
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 9..86
None	No IPR available	PANTHER	PTHR34268:SF16	OS02G0774200 PROTEIN	coord: 9..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016139.1	MS016139.1	mRNA