MS016105 (gene) Bitter gourd (TR) v1

Overview


Name	MS016105
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box/WD repeat-containing protein 4
Location	scaffold9_2: 425720 .. 425917 (+)
RNA-Seq Expression	MS016105
Synteny	MS016105

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGTTCTTCTTCACACTGGCTTTCTCCGCAGTTCCTTTGACTCTCTACGTTCCGCCACTCCGGAGCTTGAATCTCTTCGTCGAGACCATGGAAGAGATACTTCGGGAGTCTAGAACGTACACCAATCGGGTCTATCCGCGAGCTCGGCATGTTTGGTTGAGGGTTTTGGACTGTGTTCTTTGCAGCACCAGG

mRNA sequence

ATGTTGCAGTTCTTCTTCACACTGGCTTTCTCCGCAGTTCCTTTGACTCTCTACGTTCCGCCACTCCGGAGCTTGAATCTCTTCGTCGAGACCATGGAAGAGATACTTCGGGAGTCTAGAACGTACACCAATCGGGTCTATCCGCGAGCTCGGCATGTTTGGTTGAGGGTTTTGGACTGTGTTCTTTGCAGCACCAGG

Coding sequence (CDS)

ATGTTGCAGTTCTTCTTCACACTGGCTTTCTCCGCAGTTCCTTTGACTCTCTACGTTCCGCCACTCCGGAGCTTGAATCTCTTCGTCGAGACCATGGAAGAGATACTTCGGGAGTCTAGAACGTACACCAATCGGGTCTATCCGCGAGCTCGGCATGTTTGGTTGAGGGTTTTGGACTGTGTTCTTTGCAGCACCAGG

Protein sequence

MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCVLCSTR

Homology

[Close]

BLAST of MS016105 vs. NCBI nr
Match: XP_022152585.1 (uncharacterized protein LOC111020277 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 4.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of MS016105 vs. NCBI nr
Match: XP_011651782.1 (uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED: uncharacterized protein LOC107991865 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of MS016105 vs. NCBI nr
Match: XP_038905300.1 (uncharacterized protein LOC120091370 [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 5.1e-27
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLY+PPLRS NLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of MS016105 vs. NCBI nr
Match: KAG6581581.1 (hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of MS016105 vs. NCBI nr
Match: XP_022934952.1 (uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 uncharacterized protein LOC111481923 [Cucurbita maxima] >XP_023527102.1 uncharacterized protein LOC111790442 [Cucurbita pepo subsp. pepo] >KAG7018085.1 hypothetical protein SDJN02_19951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of MS016105 vs. ExPASy TrEMBL
Match: A0A6J1DEC8 (uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020277 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.2e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of MS016105 vs. ExPASy TrEMBL
Match: A0A0A0LD25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of MS016105 vs. ExPASy TrEMBL
Match: A0A1S4E3E9 (uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of MS016105 vs. ExPASy TrEMBL
Match: A0A6J1J7E0 (uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of MS016105 vs. ExPASy TrEMBL
Match: A0A6J1F484 (uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC111441965 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]

BLAST of MS016105 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-18
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQ FFT+AFSA PLTLY+PP+R L +FVETMEE+  E R Y+ R++PRAR  W R+LDC
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VLCSTR 67
             S+R
Sbjct: 61 FFSSSR 66

The following BLAST results are available for this feature:

BLAST of MS016105 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152585.1	4.6e-28	100.00	uncharacterized protein LOC111020277 [Momordica charantia]	[more]
XP_011651782.1	3.9e-27	95.45	uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED...	[more]
XP_038905300.1	5.1e-27	93.94	uncharacterized protein LOC120091370 [Benincasa hispida]	[more]
KAG6581581.1	8.7e-27	95.45	hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022934952.1	8.7e-27	95.45	uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 unchar...	[more]

BLAST of MS016105 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DEC8	2.2e-28	100.00	uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0LD25	1.9e-27	95.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1	[more]
A0A1S4E3E9	1.9e-27	95.45	uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=...	[more]
A0A6J1J7E0	4.2e-27	95.45	uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923...	[more]
A0A6J1F484	4.2e-27	95.45	uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]

BLAST of MS016105 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	7.8e-18	62.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616:SF4	BNAC07G32700D PROTEIN	coord: 1..65
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016105.1	MS016105.1	mRNA