MS016095 (gene) Bitter gourd (TR) v1

Overview
NameMS016095
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic-like
Locationscaffold9_2: 332760 .. 333074 (+)
RNA-Seq ExpressionMS016095
SyntenyMS016095
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCATCAGCATGACCTCTGCAATGCTTGGCATTTCAGCCCGTCCTAACCAGCATCCGTTGAGTTCCCACCGGAGATTAGTTGTCGTAAATGCTACTGAAGCTTCTCAAGGGGAAAAGACGAAGGTCAATTTTGTCGTCGAGAAAGATTGCAGCAAAGGCAGAAGAGATTTGATGTTTGCTGCAGCAGCAGCTGCTGTTTGTGCCATTACCGGAGTTGCTGCGGCGGAGCCAAAGCCGGGGAGTCCAGAGGCGAGGAAATTCTATGCCCCTGTTTGTGTGACCAATCCAACTGCCAAGATCTGTCGCAAA

mRNA sequence

ATGGCTACCATCAGCATGACCTCTGCAATGCTTGGCATTTCAGCCCGTCCTAACCAGCATCCGTTGAGTTCCCACCGGAGATTAGTTGTCGTAAATGCTACTGAAGCTTCTCAAGGGGAAAAGACGAAGGTCAATTTTGTCGTCGAGAAAGATTGCAGCAAAGGCAGAAGAGATTTGATGTTTGCTGCAGCAGCAGCTGCTGTTTGTGCCATTACCGGAGTTGCTGCGGCGGAGCCAAAGCCGGGGAGTCCAGAGGCGAGGAAATTCTATGCCCCTGTTTGTGTGACCAATCCAACTGCCAAGATCTGTCGCAAA

Coding sequence (CDS)

ATGGCTACCATCAGCATGACCTCTGCAATGCTTGGCATTTCAGCCCGTCCTAACCAGCATCCGTTGAGTTCCCACCGGAGATTAGTTGTCGTAAATGCTACTGAAGCTTCTCAAGGGGAAAAGACGAAGGTCAATTTTGTCGTCGAGAAAGATTGCAGCAAAGGCAGAAGAGATTTGATGTTTGCTGCAGCAGCAGCTGCTGTTTGTGCCATTACCGGAGTTGCTGCGGCGGAGCCAAAGCCGGGGAGTCCAGAGGCGAGGAAATTCTATGCCCCTGTTTGTGTGACCAATCCAACTGCCAAGATCTGTCGCAAA

Protein sequence

MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLMFAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK
Homology
BLAST of MS016095 vs. NCBI nr
Match: XP_022152600.1 (photosystem II 5 kDa protein, chloroplastic-like [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-45
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MATISMTSAMLGISAR NQHPLSSHRRLVVVN+TEASQGEKTKVNF VEKDCSKGRRDLM
Sbjct: 1   MATISMTSAMLGISARRNQHPLSSHRRLVVVNSTEASQGEKTKVNF-VEKDCSKGRRDLM 60

Query: 61  FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK
Sbjct: 61  FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK 104

BLAST of MS016095 vs. NCBI nr
Match: TKY67985.1 (Photosystem II 5 kDa protein [Spatholobus suberectus])

HSP 1 Score: 120.9 bits (302), Expect = 6.4e-24
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+I+MT++ LG S   N  P++S RRLVV NA  A +GEK K+++  +K+ S GRR++M
Sbjct: 1   MASITMTASFLGSSTMTNLSPVASQRRLVVANAARAVEGEKVKISYENDKEGSNGRRNMM 60

Query: 61  FAAAAAAVCAITGVA-AAEPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVC++ G+A A EPK G+PEA+K YAPVCVT PTAKIC K
Sbjct: 61  FAAAAAAVCSVAGMAVATEPKRGTPEAKKIYAPVCVTMPTAKICHK 106

BLAST of MS016095 vs. NCBI nr
Match: XP_017431408.1 (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Vigna angularis] >KOM51258.1 hypothetical protein LR48_Vigan08g208500 [Vigna angularis])

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 60/106 (56.60%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+I+M ++++G S   N+ P++S RRLVV NA++A +GEKT+V++  +K+ + GRR++M
Sbjct: 1   MASITMAASLIGSSVTSNRSPVASQRRLVVANASKAVEGEKTRVSYENDKEGNNGRRNMM 60

Query: 61  FAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVC++ G+A A EPK G+PEA+K Y PVCVT PTAKIC K
Sbjct: 61  FAAAAAAVCSVAGMAMADEPKRGTPEAKKIYYPVCVTMPTAKICHK 106

BLAST of MS016095 vs. NCBI nr
Match: XP_014494186.1 (photosystem II 5 kDa protein, chloroplastic-like [Vigna radiata var. radiata])

HSP 1 Score: 117.5 bits (293), Expect = 7.1e-23
Identity = 59/106 (55.66%), Postives = 86/106 (81.13%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+I+M ++++G S   N+ P++S RRLVV NA++A +GEKT+V++  +K+ + GRR++M
Sbjct: 1   MASITMAASLIGSSVTSNRSPVASPRRLVVANASKAVEGEKTRVSYENDKEGNNGRRNMM 60

Query: 61  FAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVC++ G+A A EPK G+PEA+K Y+PVCVT PTA+IC K
Sbjct: 61  FAAAAAAVCSVAGMAMADEPKRGTPEAKKIYSPVCVTMPTARICHK 106

BLAST of MS016095 vs. NCBI nr
Match: XP_015881637.1 (photosystem II 5 kDa protein, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 117.1 bits (292), Expect = 9.3e-23
Identity = 57/105 (54.29%), Postives = 79/105 (75.24%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+ +MT++ LG +   +  P+++ RRLVV  A  A++GEK  +N   +K+ + GRRDLM
Sbjct: 1   MASFTMTASFLGGATLASPSPINNSRRLVVAKAAGAAEGEKVNLNSETKKESNNGRRDLM 60

Query: 61  FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVC+  G+A A+PKPG+PEA+K YAP+CVT PTAK+C K
Sbjct: 61  FAAAAAAVCSAAGIALADPKPGTPEAKKAYAPICVTMPTAKVCHK 105

BLAST of MS016095 vs. ExPASy Swiss-Prot
Match: P31336 (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSBT PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+I+MT++ L  +      P  + RRLVV NA + +Q E  +++   + + + GRR++M
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRRLVVANAAKGAQVESVQMSGERKTEGNNGRREMM 60

Query: 61  FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICR 105
           FAAAAAA+C++ GVA AEPK GS EA+K YAPVCVT PTA+ICR
Sbjct: 61  FAAAAAAICSVAGVATAEPKRGSAEAKKAYAPVCVTMPTARICR 104

BLAST of MS016095 vs. ExPASy Swiss-Prot
Match: B3EWI4 (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-14
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 1   MATISMTSAMLGIS-ARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDL 60
           MA+I+M S+ LG S   P + P ++ R +V+V A    +GE   V    E+  + GRR+L
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANRRGVVMVKAMH--EGENNVVISKNEESKNSGRREL 60

Query: 61  MFAAAAAAVCAI--TGVAAAEPKPGSPEARKFYAPVCVTNPTAKICR 105
            FA AAAA C++  T +A  EPK G+PEA+K Y+ VCVTNPTA+ICR
Sbjct: 61  FFAMAAAAACSVAKTAMADEEPKRGTPEAKKKYSSVCVTNPTARICR 105

BLAST of MS016095 vs. ExPASy Swiss-Prot
Match: Q39195 (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBT PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-11
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+++MT+      A+      +  RRL VV    AS  + T    V E+  +  RRDLM
Sbjct: 1   MASMTMTATFFPAVAKVPS--ATGGRRLSVV---RASTSDNTPSLEVKEQSSTTMRRDLM 60

Query: 61  FAAAAAAVCAITGVAAA---EPKPGSPEARKFYAPVCVTNPTAKICR 105
           F AAAAAVC++  VA A   EPK G+  A+K YA VCVT PTAKICR
Sbjct: 61  FTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

BLAST of MS016095 vs. ExPASy TrEMBL
Match: A0A6J1DEE2 (photosystem II 5 kDa protein, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111020286 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.4e-46
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MATISMTSAMLGISAR NQHPLSSHRRLVVVN+TEASQGEKTKVNF VEKDCSKGRRDLM
Sbjct: 1   MATISMTSAMLGISARRNQHPLSSHRRLVVVNSTEASQGEKTKVNF-VEKDCSKGRRDLM 60

Query: 61  FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK
Sbjct: 61  FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK 104

BLAST of MS016095 vs. ExPASy TrEMBL
Match: A0A2N9GPB8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29141 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+I+MTS++LG +   N+ P ++ RRLV+ NA  A++GEK KV     K+ + GRRDL+
Sbjct: 1   MASITMTSSLLGGATLANRSPTAASRRLVITNAARAAEGEKMKVVSCDNKESNNGRRDLV 60

Query: 61  FAAAAAAVCAITGVA-AAEPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAA+C++ G+A A EPKPG+PEARK YAPVCVT PTAKICRK
Sbjct: 61  FAAAAAAICSVAGMAVAGEPKPGTPEARKIYAPVCVTMPTAKICRK 106

BLAST of MS016095 vs. ExPASy TrEMBL
Match: A0A0L9V8D5 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g208500 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 60/106 (56.60%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+I+M ++++G S   N+ P++S RRLVV NA++A +GEKT+V++  +K+ + GRR++M
Sbjct: 1   MASITMAASLIGSSVTSNRSPVASQRRLVVANASKAVEGEKTRVSYENDKEGNNGRRNMM 60

Query: 61  FAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVC++ G+A A EPK G+PEA+K Y PVCVT PTAKIC K
Sbjct: 61  FAAAAAAVCSVAGMAMADEPKRGTPEAKKIYYPVCVTMPTAKICHK 106

BLAST of MS016095 vs. ExPASy TrEMBL
Match: A0A1S3TKA3 (photosystem II 5 kDa protein, chloroplastic-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106756317 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.4e-23
Identity = 59/106 (55.66%), Postives = 86/106 (81.13%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+I+M ++++G S   N+ P++S RRLVV NA++A +GEKT+V++  +K+ + GRR++M
Sbjct: 1   MASITMAASLIGSSVTSNRSPVASPRRLVVANASKAVEGEKTRVSYENDKEGNNGRRNMM 60

Query: 61  FAAAAAAVCAITGVAAA-EPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVC++ G+A A EPK G+PEA+K Y+PVCVT PTA+IC K
Sbjct: 61  FAAAAAAVCSVAGMAMADEPKRGTPEAKKIYSPVCVTMPTARICHK 106

BLAST of MS016095 vs. ExPASy TrEMBL
Match: A0A6P4A783 (photosystem II 5 kDa protein, chloroplastic-like OS=Ziziphus jujuba OX=326968 GN=LOC107417542 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.5e-23
Identity = 57/105 (54.29%), Postives = 79/105 (75.24%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+ +MT++ LG +   +  P+++ RRLVV  A  A++GEK  +N   +K+ + GRRDLM
Sbjct: 1   MASFTMTASFLGGATLASPSPINNSRRLVVAKAAGAAEGEKVNLNSETKKESNNGRRDLM 60

Query: 61  FAAAAAAVCAITGVAAAEPKPGSPEARKFYAPVCVTNPTAKICRK 106
           FAAAAAAVC+  G+A A+PKPG+PEA+K YAP+CVT PTAK+C K
Sbjct: 61  FAAAAAAVCSAAGIALADPKPGTPEAKKAYAPICVTMPTAKVCHK 105

BLAST of MS016095 vs. TAIR 10
Match: AT1G51400.1 (Photosystem II 5 kD protein )

HSP 1 Score: 73.9 bits (180), Expect = 8.4e-14
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 0

Query: 1   MATISMTSAML-GISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDL 60
           MA+++MTS+ L  +S  P     +S R L VV A+ +     T +    ++   K RRDL
Sbjct: 1   MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKASGSE--NTTSLENKKQEQSMKMRRDL 60

Query: 61  MFAAAAAAVCAITGVAAA--EPKPGSPEARKFYAPVCVTNPTAKICR 105
           +F AAAAAVC++  VA A  EPK G+  A+K YAPVCVT PTAKICR
Sbjct: 61  VFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKICR 105

BLAST of MS016095 vs. TAIR 10
Match: AT3G21055.1 (photosystem II subunit T )

HSP 1 Score: 67.8 bits (164), Expect = 6.0e-12
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 0

Query: 1   MATISMTSAMLGISARPNQHPLSSHRRLVVVNATEASQGEKTKVNFVVEKDCSKGRRDLM 60
           MA+++MT+      A+      +  RRL VV    AS  + T    V E+  +  RRDLM
Sbjct: 1   MASMTMTATFFPAVAKVPS--ATGGRRLSVV---RASTSDNTPSLEVKEQSSTTMRRDLM 60

Query: 61  FAAAAAAVCAITGVAAA---EPKPGSPEARKFYAPVCVTNPTAKICR 105
           F AAAAAVC++  VA A   EPK G+  A+K YA VCVT PTAKICR
Sbjct: 61  FTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152600.11.3e-4597.14photosystem II 5 kDa protein, chloroplastic-like [Momordica charantia][more]
TKY67985.16.4e-2459.43Photosystem II 5 kDa protein [Spatholobus suberectus][more]
XP_017431408.14.2e-2356.60PREDICTED: photosystem II 5 kDa protein, chloroplastic [Vigna angularis] >KOM512... [more]
XP_014494186.17.1e-2355.66photosystem II 5 kDa protein, chloroplastic-like [Vigna radiata var. radiata][more]
XP_015881637.19.3e-2354.29photosystem II 5 kDa protein, chloroplastic-like [Ziziphus jujuba][more]
Match NameE-valueIdentityDescription
P313361.5e-2050.96Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSB... [more]
B3EWI42.8e-1447.66Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1[more]
Q391958.4e-1146.73Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P... [more]
Match NameE-valueIdentityDescription
A0A6J1DEE26.4e-4697.14photosystem II 5 kDa protein, chloroplastic-like OS=Momordica charantia OX=3673 ... [more]
A0A2N9GPB86.3e-2560.38Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29141 PE=4 SV=1[more]
A0A0L9V8D52.0e-2356.60Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan08g208500 PE... [more]
A0A1S3TKA33.4e-2355.66photosystem II 5 kDa protein, chloroplastic-like OS=Vigna radiata var. radiata O... [more]
A0A6P4A7834.5e-2354.29photosystem II 5 kDa protein, chloroplastic-like OS=Ziziphus jujuba OX=326968 GN... [more]
Match NameE-valueIdentityDescription
AT1G51400.18.4e-1447.66Photosystem II 5 kD protein [more]
AT3G21055.16.0e-1246.73photosystem II subunit T [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34940:SF1PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTICcoord: 1..105
IPR040296Photosystem II 5kDa protein, chloroplasticPANTHERPTHR34940PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTICcoord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016095.1MS016095.1mRNA