MS016081 (gene) Bitter gourd (TR) v1

Overview


Name	MS016081
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein
Location	scaffold9_2: 247208 .. 249957 (+)
RNA-Seq Expression	MS016081
Synteny	MS016081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTGCACTTCCACTTCTCCTTCTTCCCTCATGCTCACTTCTGCTTCTTCTTCCGTACACCCCCAAGACCTCGCTTCCTCCATCGTCTCCTTCAAGGGGAAACCTCAATTTTCCACCATCAAAGCCTTCTCCTCCGCCCATTTCCTCTGCAGACCGAGGAGGTCCACCGATTGGATCTTCCTTCATTTCCAGCGGCGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCTGCCGAGGCGGGCGTCGCGGAGGCGGAGGCGGAGGCGAAGGAGGAGGAGGGGCTTGACGGGGCGGCGGCTACCGTCGCTGCGCCTAAACCTAAGAAGGGGAAAGCCGCGTTGCCCCTTAAAAGAGACAGAGTATGTTCGAAATCTTGTAATGTTTTGATCTGGGTGTGAATTATAATTTGATTGCGGGTTGTGTTCCGTTTCGTTGCTTGGAGGATGTAACCACTCTGGATTGGTCTAACGGCCATGATACTCGTGAAAAAGTAAAAGAGTTCTAAGGGAATGAATTCAAATCACGGTCACATAACGAAATATTGTAGGATTAGGTAATGGTCTCGTAGGATTAGTCTGAGGTGTTTTAAAATGGTTGTGGTGGACTCTTGGGTGTTTAAACTTTACGAGTTTAAAGTTGGCCTCGTTTTTTGGTTGCTGCAGTCATCAAGGTCATTAGCCAAGTTCCCTTTTCTTTGTCTTTCTTTCCATGTGCTCATTTCATGATTGATGTCTGAATTCAGTTTGTTATGTGATATGTCAGAGGAGATCGAAGAGATTCTTGGAGATTCAAAAACTGAGGGAAAACAAGAAAGAGTATGACCTCAAGACAGCAATATCTCTGCTCAAGGAAATGGCTAGCACAAAGTTTGTAGAAACAGCCGAAGCCCATTTCCGGCTCAATATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTGAGTTTTTGTTTTATAAATCATGAATCCTTTATTGGTAAGGAGTTGTAAAGAATATTTATATCATGAGGTAATTTTTTTGAATGCATTGATGCAGGTAAATCTGCCTAAAGGGACTGGGCAGACTGTTAGAGTAGCTGTTCTTACTCAAGGTAGTTACTTTTAATGCTTGAGCAGCTTTCTCTTTCTCTTTAACTTAATACACAGTTAGCTTTAGTAGTGTTTCTTATGCAATGTTACTTATGATTTTTAGAACAAAAATTTAGTAAAAATATGTTTGGGAAACTATTTTTTAAAAGCTTTTTTTTTCATATGTTTTCATGGATGACCCGATTTTTAGAATAAGTGAAGTTATTCTTCCTCTCAAAATAAGGAGTTTGTGAATAAGCCATCAGATCATAATGTTTTAAAATAGTTTTTACAATAGTTAGCTAATCAAGCACAAACTATCTTGATTGCAAACAAGAAACTTTCTGGAGTTATCTTCGTGTTTAACTCTAAGCTAAGTTTGGGTAGTAGAGTTTTTACCATAATTTGAGGTTTCTACCGTGTAGTTGTTCTTAAGTGGTCCGTGGATGGGTGAAGTCCAGTCTCCTGGCACTTCGATTCCTGGTCAAACCAAACAGTAGGATTTTATGCATCTAGACTCCTTTTTCTCGAGTGGTTACTTTTTCAGAAATCTTTACTGTGAAGGTTGCAATTATAAAAAGTTGAAATAAATATACAGGTGAAAAATTCGATGAAGCCAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTGATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTGTTGCTCTGACTACATTACTTTAATCTTTCTTTCAATTATTTTTTGAGATTTTTATAATTTTTGCAATCGATAAGTCTTCCTAAACAAGTGAATTAGATGTTTAGAGAGTTAGAATTACACTGATGATCCTGTTTATGTAATGTAAAAAGAAAATGAGATACATGAACACCAACTAAACAGTTACACTGGGTCTTTTAATCCATTTTGGTCATAGATATAATTCCTAGATTTTGTTGATCAAAGTGCTTGCCTCATGCCTAAAGCCAAATTTAAATCATTCTCTGAAATTGATGAAGTCTCTTTGTATGCAAATGTTTTCTAGCCTTGTATAATTGTCATCGGAGTAAAATTTTGATTACCCGTATTACTATAATGGAATAATTGATTTCCATTTTCTAATCTTCTCTACTTGTTTCAGGTTGCGAGCCTCGGTAAGCTCCTGGGACCACGGGGACTCATGCCAAATCCAAAAGCCGGTACTGTAGCAACTAATTTACCTCAGGTATTAATAACTTCTTTTGGTACCTGCAGTGCATCTAGTAAAAGAAATTCAAGACTTCATCTAACCCATGAACTAACCTCAATTTCAGGCAATTGCAGAGTTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACCGGGATAGTTCACTTACCATTTGGAAAAGCCGACTTCAGTGAAGAAGACCTTCTCATAAACCTGCTTGCTGCCATAGTACGTCTTCCCTTCTTCTCTCCATAGCTGTTAGTCTCTAAAAACGCGTCTCGATAATTTTCCAATAAGTCATTTTCTGCTAACTCTGACAGAAATCAGTGGAAACCAATAAGCCATCAGGTGCAAAGGGTGTATACTGGAAAAGCACTCACATCTGCTCGTCGATGGGGCCTTCGATTCGGTTAAATATAAGGGAGATGCTTGACTTCAAGCTTCCCTCGAGTGCT

mRNA sequence

ATGGCGGCCTGCACTTCCACTTCTCCTTCTTCCCTCATGCTCACTTCTGCTTCTTCTTCCGTACACCCCCAAGACCTCGCTTCCTCCATCGTCTCCTTCAAGGGGAAACCTCAATTTTCCACCATCAAAGCCTTCTCCTCCGCCCATTTCCTCTGCAGACCGAGGAGGTCCACCGATTGGATCTTCCTTCATTTCCAGCGGCGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCTGCCGAGGCGGGCGTCGCGGAGGCGGAGGCGGAGGCGAAGGAGGAGGAGGGGCTTGACGGGGCGGCGGCTACCGTCGCTGCGCCTAAACCTAAGAAGGGGAAAGCCGCGTTGCCCCTTAAAAGAGACAGAAGGAGATCGAAGAGATTCTTGGAGATTCAAAAACTGAGGGAAAACAAGAAAGAGTATGACCTCAAGACAGCAATATCTCTGCTCAAGGAAATGGCTAGCACAAAGTTTGTAGAAACAGCCGAAGCCCATTTCCGGCTCAATATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTAAATCTGCCTAAAGGGACTGGGCAGACTGTTAGAGTAGCTGTTCTTACTCAAGGTAGTGAAAAATTCGATGAAGCCAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTGATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCGAGCCTCGGTAAGCTCCTGGGACCACGGGGACTCATGCCAAATCCAAAAGCCGGTACTGTAGCAACTAATTTACCTCAGGCAATTGCAGAGTTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACCGGGATAGTTCACTTACCATTTGGAAAAGCCGACTTCAGTGAAGAAGACCTTCTCATAAACCTGCTTGCTGCCATAAAATCAGTGGAAACCAATAAGCCATCAGGTGCAAAGGGTGTATACTGGAAAAGCACTCACATCTGCTCGTCGATGGGGCCTTCGATTCGGTTAAATATAAGGGAGATGCTTGACTTCAAGCTTCCCTCGAGTGCT

Coding sequence (CDS)

ATGGCGGCCTGCACTTCCACTTCTCCTTCTTCCCTCATGCTCACTTCTGCTTCTTCTTCCGTACACCCCCAAGACCTCGCTTCCTCCATCGTCTCCTTCAAGGGGAAACCTCAATTTTCCACCATCAAAGCCTTCTCCTCCGCCCATTTCCTCTGCAGACCGAGGAGGTCCACCGATTGGATCTTCCTTCATTTCCAGCGGCGAGCGAGGCACCATGTGATCGTCGCTGCTCTCGCTGCCGAGGCGGGCGTCGCGGAGGCGGAGGCGGAGGCGAAGGAGGAGGAGGGGCTTGACGGGGCGGCGGCTACCGTCGCTGCGCCTAAACCTAAGAAGGGGAAAGCCGCGTTGCCCCTTAAAAGAGACAGAAGGAGATCGAAGAGATTCTTGGAGATTCAAAAACTGAGGGAAAACAAGAAAGAGTATGACCTCAAGACAGCAATATCTCTGCTCAAGGAAATGGCTAGCACAAAGTTTGTAGAAACAGCCGAAGCCCATTTCCGGCTCAATATTGATCCCAAATACAATGATCAACAGCTGAGAGCAACCGTAAATCTGCCTAAAGGGACTGGGCAGACTGTTAGAGTAGCTGTTCTTACTCAAGGTAGTGAAAAATTCGATGAAGCCAAAAATGCTGGAGCAGATTTGGTTGGTGGGGAGGACTTGATAGAACAGATAAAAGGAGGATTTATGGATTTTGACAAATTGATTGCTTCCCCAGACATGATGCCTAAGGTTGCGAGCCTCGGTAAGCTCCTGGGACCACGGGGACTCATGCCAAATCCAAAAGCCGGTACTGTAGCAACTAATTTACCTCAGGCAATTGCAGAGTTCAAGCAGGGGAAAGTTGAATACAGAGCAGATAAAACCGGGATAGTTCACTTACCATTTGGAAAAGCCGACTTCAGTGAAGAAGACCTTCTCATAAACCTGCTTGCTGCCATAAAATCAGTGGAAACCAATAAGCCATCAGGTGCAAAGGGTGTATACTGGAAAAGCACTCACATCTGCTCGTCGATGGGGCCTTCGATTCGGTTAAATATAAGGGAGATGCTTGACTTCAAGCTTCCCTCGAGTGCT

Protein sequence

MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDWIFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA

Homology

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BLAST of MS016081 vs. NCBI nr
Match: XP_022152718.1 (LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 658.3 bits (1697), Expect = 3.8e-185
Identity = 351/361 (97.23%), Postives = 351/361 (97.23%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MA CTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  IFLHFQRRARHHVIVAALAAE--AGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPL 120
           IFLHFQRRARHHVIVAALAAE        EAEAKEEEGLDGAAATVAAPKPKKGKAALPL
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLDGAAATVAAPKPKKGKAALPL 120

Query: 121 KRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ 180
           KRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ 180

Query: 181 LRATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240
           LRATVNLPKGTGQTVRVAVLTQG EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS
Sbjct: 181 LRATVNLPKGTGQTVRVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240

Query: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300
           PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK
Sbjct: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300

Query: 301 ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 360
           ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS
Sbjct: 301 ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 360

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BLAST of MS016081 vs. NCBI nr
Match: XP_022948661.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 622.5 bits (1604), Expect = 2.3e-174
Identity = 331/359 (92.20%), Postives = 342/359 (95.26%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MAACTSTSPSSLMLT ASSSV+PQDL SSIVSF GK +FSTIK+FSS HFLCRPRRS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  IFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKR 120
           I L+FQRRARHHVIVAALAAEA VAEAEAEA+E   + G   TVAAPKPKKGKAALPLKR
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAV-GGTDTVAAPKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATVNLPKGTGQTVRVAVLTQG EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD
Sbjct: 181 ATVNLPKGTGQTVRVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           FSEEDLL+NLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 301 FSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

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BLAST of MS016081 vs. NCBI nr
Match: XP_022998464.1 (50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 620.9 bits (1600), Expect = 6.7e-174
Identity = 331/359 (92.20%), Postives = 342/359 (95.26%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MAACTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIK+FSS HFLCRPRRS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  IFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKR 120
           I L+FQRRARHHVIVAALAAEA VAEAEAEA+E   + G   TVAAPKPKKGKAALPLKR
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAV-GGTDTVAAPKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATVNLPKGTGQTVRVAVLTQG EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD
Sbjct: 181 ATVNLPKGTGQTVRVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           FSEEDLL+NLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKL S+A
Sbjct: 301 FSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

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BLAST of MS016081 vs. NCBI nr
Match: KAG7036595.1 (50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 620.2 bits (1598), Expect = 1.2e-173
Identity = 330/359 (91.92%), Postives = 342/359 (95.26%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MAACTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIK+FSS H LCRPRRS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHLLCRPRRSADW 60

Query: 61  IFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKR 120
           I L+FQRRARHHVIVAALAAEA VAEAEAEA+E   + G   TVAAPKPKKGKAALPLKR
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAV-GGTDTVAAPKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATVNLPKGTGQTVRVAVLTQG EKFDEAKNAGADLVGGEDLIEQIKGGFM+FDKLIASPD
Sbjct: 181 ATVNLPKGTGQTVRVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           FSEEDLL+NLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 301 FSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of MS016081 vs. NCBI nr
Match: XP_038905945.1 (50S ribosomal protein L1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 619.4 bits (1596), Expect = 2.0e-173
Identity = 333/360 (92.50%), Postives = 339/360 (94.17%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAF-SSAHFLCRPRRSTD 60
           MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFK KPQ STIK+F SS+HFL  PRRSTD
Sbjct: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKPKPQISTIKSFSSSSHFLGWPRRSTD 60

Query: 61  WIFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLK 120
           W+FLHFQRRARHHVIVAALAAEA VAE EAE +          TVAAPKPKKGKAALPLK
Sbjct: 61  WVFLHFQRRARHHVIVAALAAEANVAEVEAEEE--------TPTVAAPKPKKGKAALPLK 120

Query: 121 RDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEM STKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMGSTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP 240
           RATVNLPKGTGQTVRVAVLTQG E+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP
Sbjct: 181 RATVNLPKGTGQTVRVAVLTQG-ERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP 240

Query: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300
           DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA
Sbjct: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300

Query: 301 DFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           DFSEEDLLINLLAAIKS+ETNKPSGAKGVYWKS HICSSMGPSIRLNIREMLDFKLPSSA
Sbjct: 301 DFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSSA 351

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BLAST of MS016081 vs. ExPASy Swiss-Prot
Match: Q9LY66 (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 2.4e-118
Identity = 241/358 (67.32%), Postives = 277/358 (77.37%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +    +  L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  IFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKR 120
                 R + H  IV+A+AAEA +        EE+    A A +  PKPKKGKAAL LKR
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAALVLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DR RSKRFLEIQKLRE KKEYD+ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATV+LPKGTGQTV VAVL QG EK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPD
Sbjct: 181 ATVSLPKGTGQTVIVAVLAQG-EKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MM KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +
Sbjct: 241 MMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVN 300

Query: 301 FSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 359
           F+EEDLLIN LAA+KSVETNKP GAKGVYWKS HICSSMGPSI+LNIREM+DFK P++
Sbjct: 301 FTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of MS016081 vs. ExPASy Swiss-Prot
Match: Q9LE95 (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 4.2e-118
Identity = 241/358 (67.32%), Postives = 280/358 (78.21%), Query Frame = 0


Query: 6   STSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDWIFLHF 65
           + +P SL L  ASSS   Q   S    FK     S++   +      R R    W+    
Sbjct: 3   TAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQ---RERSCLKWVDFTS 62

Query: 66  QRRARHHV---IVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAP-KPKKGKAALPLKRD 125
           Q+++   V   ++AA+AAEA VA+ E    EEEG  G  AT+ +P KPKKGKAALPLK D
Sbjct: 63  QKQSPKSVSFRVLAAVAAEAEVADME----EEEGESGGVATLPSPTKPKKGKAALPLKSD 122

Query: 126 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 185
           R RSKRFLEIQKLRE K+EYDLKTA+SL+K+M+STKFVETAEAHFRLNIDPKYNDQQLRA
Sbjct: 123 RTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRA 182

Query: 186 TVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 245
           TV+LPKGTG+TV++AVL QG +K DEAK AGAD+VGGE+LIEQIKGGFMDFDKLIA+ DM
Sbjct: 183 TVSLPKGTGKTVKIAVLAQG-DKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDM 242

Query: 246 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 305
           M KVASLG++LGPRGLMP PKAGTV  N+ QA+ EFK+GKVE+R DKTGIVH+PFGK +F
Sbjct: 243 MAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNF 302

Query: 306 SEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
            EEDLLINL A IKSVETNKP+GAKGVYWKS HI SSMGPSIRLNIREMLD+K PS+A
Sbjct: 303 EEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]

BLAST of MS016081 vs. ExPASy Swiss-Prot
Match: B0JNQ5 (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplA PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-76
Identity = 148/234 (63.25%), Postives = 186/234 (79.49%), Query Frame = 0


Query: 122 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 181
           ++ S+R  + Q   EN K Y+   A++LLKE+A+ KF ETAEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRDAQAKVEN-KAYEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRT 62

Query: 182 TVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 241
           TV+LPKGTG+TVRVAV+T+G EK  EA NAGAD+VG E+LIE+I  G MDF+ LIA+PDM
Sbjct: 63  TVSLPKGTGRTVRVAVITRG-EKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDM 122

Query: 242 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 301
           MPKVA LG+ LGPRGLMP+PK GTV T+L  AIAEFK GK+E+RAD+TGIVH+ FGKA F
Sbjct: 123 MPKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASF 182

Query: 302 SEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKL 356
           S EDLL+NL A  ++V+ N+PSGAKG YW++ ++ SSMGPSI+++I  + D KL
Sbjct: 183 SAEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234

[Close]

BLAST of MS016081 vs. ExPASy Swiss-Prot
Match: Q3MA18 (50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplA PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.7e-75
Identity = 143/238 (60.08%), Postives = 186/238 (78.15%), Query Frame = 0


Query: 122 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 181
           ++ S+R  E+Q   E+ +EY    A+SLLKE A+ KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRT 62

Query: 182 TVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 241
           TV LPKGTGQ VRVAV+ +G EK  EA NAGAD+ G E+LI++I+ G MDFDKLIA+PD+
Sbjct: 63  TVALPKGTGQIVRVAVIARG-EKVTEASNAGADVFGSEELIDEIQKGRMDFDKLIATPDV 122

Query: 242 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 301
           MP+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA F
Sbjct: 123 MPQVAKLGKMLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASF 182

Query: 302 SEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           S EDLL+NL A  ++++ N+PSGAKG YW++ ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 183 SPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of MS016081 vs. ExPASy Swiss-Prot
Match: Q8YLJ7 (50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplA PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.2e-74
Identity = 143/238 (60.08%), Postives = 186/238 (78.15%), Query Frame = 0


Query: 122 RRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRA 181
           ++ S+R  E+Q   E+ +EY    A+ LLKE A+ KF E AEAH RL IDPKY DQQLR 
Sbjct: 3   KKVSRRLRELQAKVED-REYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRT 62

Query: 182 TVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDM 241
           TV LPKGTGQ VRVAV+ +G EK  EA NAGAD+VG E+LI++I+ G MDFDKLIA+PD+
Sbjct: 63  TVALPKGTGQIVRVAVIARG-EKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDV 122

Query: 242 MPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADF 301
           MP+VA LGK+LGPRGLMP+PK GTV  ++  AIAEFK GK+E+RAD+TGIVH+ FGKA F
Sbjct: 123 MPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASF 182

Query: 302 SEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           S EDLL+NL A  ++++ N+PSGAKG YW++ ++ ++MGPSIR++I  + D+KL  +A
Sbjct: 183 SPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLTEAA 238

[Close]

BLAST of MS016081 vs. ExPASy TrEMBL
Match: A0A6J1DFM3 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1)

HSP 1 Score: 658.3 bits (1697), Expect = 1.8e-185
Identity = 351/361 (97.23%), Postives = 351/361 (97.23%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MA CTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW
Sbjct: 1   MATCTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60

Query: 61  IFLHFQRRARHHVIVAALAAE--AGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPL 120
           IFLHFQRRARHHVIVAALAAE        EAEAKEEEGLDGAAATVAAPKPKKGKAALPL
Sbjct: 61  IFLHFQRRARHHVIVAALAAEXXXXXXXXEAEAKEEEGLDGAAATVAAPKPKKGKAALPL 120

Query: 121 KRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ 180
           KRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQ 180

Query: 181 LRATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240
           LRATVNLPKGTGQTVRVAVLTQG EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS
Sbjct: 181 LRATVNLPKGTGQTVRVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIAS 240

Query: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300
           PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK
Sbjct: 241 PDMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 300

Query: 301 ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 360
           ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS
Sbjct: 301 ADFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 360

[Close]

BLAST of MS016081 vs. ExPASy TrEMBL
Match: A0A6J1G9U2 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 1.1e-174
Identity = 331/359 (92.20%), Postives = 342/359 (95.26%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MAACTSTSPSSLMLT ASSSV+PQDL SSIVSF GK +FSTIK+FSS HFLCRPRRS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLTSSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  IFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKR 120
           I L+FQRRARHHVIVAALAAEA VAEAEAEA+E   + G   TVAAPKPKKGKAALPLKR
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAV-GGTDTVAAPKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATVNLPKGTGQTVRVAVLTQG EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD
Sbjct: 181 ATVNLPKGTGQTVRVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           FSEEDLL+NLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKLPS+A
Sbjct: 301 FSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLPSTA 357

[Close]

BLAST of MS016081 vs. ExPASy TrEMBL
Match: A0A6J1KEE5 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111493089 PE=3 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 3.3e-174
Identity = 331/359 (92.20%), Postives = 342/359 (95.26%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MAACTSTSPSSLMLT ASSSV+PQDLASSIVSF GK +FSTIK+FSS HFLCRPRRS DW
Sbjct: 1   MAACTSTSPSSLMLTYASSSVYPQDLASSIVSFNGKSRFSTIKSFSSCHFLCRPRRSADW 60

Query: 61  IFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKR 120
           I L+FQRRARHHVIVAALAAEA VAEAEAEA+E   + G   TVAAPKPKKGKAALPLKR
Sbjct: 61  ICLNFQRRARHHVIVAALAAEANVAEAEAEAEEGVAV-GGTDTVAAPKPKKGKAALPLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DRRRSKRFLEIQKLRENKKEY++KTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR
Sbjct: 121 DRRRSKRFLEIQKLRENKKEYEIKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATVNLPKGTGQTVRVAVLTQG EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD
Sbjct: 181 ATVNLPKGTGQTVRVAVLTQG-EKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD
Sbjct: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300

Query: 301 FSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           FSEEDLL+NLLAAIKSVETNKP+GAKGVYWKS HICSSMGPSIRLNIREMLDFKL S+A
Sbjct: 301 FSEEDLLVNLLAAIKSVETNKPTGAKGVYWKSAHICSSMGPSIRLNIREMLDFKLSSTA 357

[Close]

BLAST of MS016081 vs. ExPASy TrEMBL
Match: A0A5A7TXX7 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001120 PE=3 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.2e-171
Identity = 328/360 (91.11%), Postives = 341/360 (94.72%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIK+FSS++FLCR RRS D
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WIFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLK 120
           W+FL+FQRRAR HVIVAALAAEA VAE EAE  EEE +  AAAT  APKPKKGKAALPLK
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAE--EEEAV-AAAATATAPKPKKGKAALPLK 120

Query: 121 RDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRRRSKRFLEIQKLRENKKEYDL TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP 240
           RATVNLPKGTGQTV+VAVLTQGSE+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQGSERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP 240

Query: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300
           DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA
Sbjct: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300

Query: 301 DFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           +FSEEDLLINLLAAIKS+ETNKPSGAKGVYWKS HICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 301 NFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 357

[Close]

BLAST of MS016081 vs. ExPASy TrEMBL
Match: A0A5D3BLK6 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00110 PE=3 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 8.3e-170
Identity = 327/360 (90.83%), Postives = 340/360 (94.44%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSV-HPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTD 60
           MAACTST PSSLMLTSASSSV  PQDLASSIVSFKGKPQ  TIK+FSS++FLCR RRS D
Sbjct: 1   MAACTSTPPSSLMLTSASSSVPPPQDLASSIVSFKGKPQIPTIKSFSSSNFLCRSRRSAD 60

Query: 61  WIFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLK 120
           W+FL+FQRRAR HVIVAALAAEA VAE EAE  EEE +  AAAT  APKPKKGKAALPLK
Sbjct: 61  WVFLNFQRRARQHVIVAALAAEANVAEVEAE--EEEAV-AAAATATAPKPKKGKAALPLK 120

Query: 121 RDRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQL 180
           RDRRRSKRFLEIQKLRENKKEYDL TAISLLKEM+STKFVE+AEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRRRSKRFLEIQKLRENKKEYDLTTAISLLKEMSSTKFVESAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP 240
           RATVNLPKGTGQTV+VAVLTQG E+FDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP
Sbjct: 181 RATVNLPKGTGQTVKVAVLTQG-ERFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASP 240

Query: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300
           DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA
Sbjct: 241 DMMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKA 300

Query: 301 DFSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSSA 360
           +FSEEDLLINLLAAIKS+ETNKPSGAKGVYWKS HICSSMGPSIRLNIR+MLDFKLPSSA
Sbjct: 301 NFSEEDLLINLLAAIKSIETNKPSGAKGVYWKSAHICSSMGPSIRLNIRDMLDFKLPSSA 356

[Close]

BLAST of MS016081 vs. TAIR 10
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 426.8 bits (1096), Expect = 1.7e-119
Identity = 241/358 (67.32%), Postives = 277/358 (77.37%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +    +  L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  IFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKR 120
                 R + H  IV+A+AAEA +        EE+    A A +  PKPKKGKAAL LKR
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAALVLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DR RSKRFLEIQKLRE KKEYD+ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATV+LPKGTGQTV VAVL QG EK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPD
Sbjct: 181 ATVSLPKGTGQTVIVAVLAQG-EKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKAD 300
           MM KVA LGK+LGPRGLMPNPKAGTV  N+PQAI EFK+GKVE+RADKTGIVH+PFGK +
Sbjct: 241 MMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVN 300

Query: 301 FSEEDLLINLLAAIKSVETNKPSGAKGVYWKSTHICSSMGPSIRLNIREMLDFKLPSS 359
           F+EEDLLIN LAA+KSVETNKP GAKGVYWKS HICSSMGPSI+LNIREM+DFK P++
Sbjct: 301 FTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPTA 345

[Close]

BLAST of MS016081 vs. TAIR 10
Match: AT3G63490.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 283.5 bits (724), Expect = 2.4e-76
Identity = 177/298 (59.40%), Postives = 208/298 (69.80%), Query Frame = 0


Query: 1   MAACTSTSPSSLMLTSASSSVHPQDLASSIVSFKGKPQFSTIKAFSSAHFLCRPRRSTDW 60
           MAAC   + SSLML  A++S   QDL  +   F     F++ +    +  L     S D 
Sbjct: 1   MAAC--ATHSSLMLAYAAASTRSQDLTPTPSLF----SFASSRPNHLSFPLLLLGGSRDR 60

Query: 61  IFLHFQRRARHHVIVAALAAEAGVAEAEAEAKEEEGLDGAAATVAAPKPKKGKAALPLKR 120
                 R + H  IV+A+AAEA +        EE+    A A +  PKPKKGKAAL LKR
Sbjct: 61  RCAAIDRASNHKFIVSAVAAEADL------DTEEDLEQTATAVLDPPKPKKGKAALVLKR 120

Query: 121 DRRRSKRFLEIQKLRENKKEYDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLR 180
           DR RSKRFLEIQKLRE KKEYD+ TAISLLK+ A+T+FVE+ EAHFRLNIDPKYNDQQLR
Sbjct: 121 DRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLR 180

Query: 181 ATVNLPKGTGQTVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPD 240
           ATV+LPKGTGQTV VAVL QG EK DEAK+AGAD+VG +DLIEQIKGGFM+FDKLIASPD
Sbjct: 181 ATVSLPKGTGQTVIVAVLAQG-EKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPD 240

Query: 241 MMPKVASLGKLLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGK 299
           MM KVA LGK+LGPRGLMPNPKAGTV  N+PQ+    ++GK+     K G+     GK
Sbjct: 241 MMVKVAGLGKILGPRGLMPNPKAGTVTANIPQS---SRRGKLNSEQTKLGLFTFHLGK 282

[Close]

BLAST of MS016081 vs. TAIR 10
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-39
Identity = 91/225 (40.44%), Postives = 140/225 (62.22%), Query Frame = 0


Query: 133 KLRENKKE-YDLKTAISLLKEMASTKFVETAEAHFRLNIDPKYNDQQLRATVNLPKGTGQ 192
           +L+  KK  +DL  AI  +K  A  KF ET EAH RL I+   ++  +R T+ LP    +
Sbjct: 179 ELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKK 238

Query: 193 TVRVAVLTQGSEKFDEAKNAGADLVGGEDLIEQI-KGGFMDFDKLIASPDMMPKVASLGK 252
            V+VA   +G++  ++AK AGAD+VGG +LIE+I K G +DFD+ +A+P MMP+V  + +
Sbjct: 239 DVKVAFFAEGADA-EDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISR 298

Query: 253 LLGPRGLMPNPKAGTVATNLPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLINL 312
           +L   GLMPNPK G+V  ++ +A+ + K G  ++R DKT I+H+P GK  FSEE L  N+
Sbjct: 299 ILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENV 358

Query: 313 LAAIKSVETNKPSGAKGV-----YWKSTHICSSMGPSIRLNIREM 351
            A + ++   KP+G K       Y  + H+CS+MG    ++I+ +
Sbjct: 359 GAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSL 402

The following BLAST results are available for this feature:

BLAST of MS016081 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152718.1	3.8e-185	97.23	LOW QUALITY PROTEIN: 50S ribosomal protein L1, chloroplastic-like [Momordica cha...	[more]
XP_022948661.1	2.3e-174	92.20	50S ribosomal protein L1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022998464.1	6.7e-174	92.20	50S ribosomal protein L1, chloroplastic-like [Cucurbita maxima]	[more]
KAG7036595.1	1.2e-173	91.92	50S ribosomal protein L1, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_038905945.1	2.0e-173	92.50	50S ribosomal protein L1, chloroplastic-like [Benincasa hispida]	[more]

BLAST of MS016081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LY66	2.4e-118	67.32	50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1 ...	[more]
Q9LE95	4.2e-118	67.32	50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=...	[more]
B0JNQ5	1.0e-76	63.25	50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]
Q3MA18	9.7e-75	60.08	50S ribosomal protein L1 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937)...	[more]
Q8YLJ7	2.2e-74	60.08	50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]

BLAST of MS016081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFM3	1.8e-185	97.23	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111020374 PE=3 SV=1	[more]
A0A6J1G9U2	1.1e-174	92.20	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111452270 PE=3 SV=1	[more]
A0A6J1KEE5	3.3e-174	92.20	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111493089 PE=3 SV=1	[more]
A0A5A7TXX7	1.2e-171	91.11	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00...	[more]
A0A5D3BLK6	8.3e-170	90.83	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00...	[more]

BLAST of MS016081 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63490.1	1.7e-119	67.32	Ribosomal protein L1p/L10e family	[more]
AT3G63490.2	2.4e-76	59.40	Ribosomal protein L1p/L10e family	[more]
AT2G42710.1	2.3e-39	40.44	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..95
None	No IPR available	GENE3D	3.30.190.20		coord: 141..345 e-value: 4.9E-81 score: 273.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..116
None	No IPR available	PANTHER	PTHR23105:SF110	MITOCHONDRIAL RIBOSOMAL PROTEIN, LARGE	coord: 138..352
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 138..352
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 150..341 e-value: 6.9E-47 score: 159.8
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 143..345 e-value: 1.94265E-72 score: 222.445
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 188..280 e-value: 4.9E-81 score: 273.2
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAM	TIGR01169	TIGR01169	coord: 124..349 e-value: 4.3E-93 score: 308.8
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 122..350 score: 39.538368
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 242..260
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 127..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016081.1	MS016081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome