MS015899 (gene) Bitter gourd (TR) v1

Overview


Name	MS015899
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Glycine rich RNA binding protein
Location	scaffold943_2: 747042 .. 748592 (-)
RNA-Seq Expression	MS015899
Synteny	MS015899

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCCTCTCCAGTGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCATCTGCTTCCTCCATTCTGAAATCGCAGTGGACTACCCTTCGTCTCAGTTCAACTCTCACCTCGCCGAAGCTCTTCATCAGTGGTACGTCTTGTATACAAAATCAATCCCCTTGTGTCGCCATTTTTTCGTTCGTTTCTTGATTTTACCCATCTGGGTTATCGAAAATAGCGTGGAAAATTTGATATTTCTGTTTGGATGCTGCCATTTTGCTCGTCCTTTCTCCCTTGCGCCAAATGGGGTATTGTTAATCAACGATGAACTGTTGTTCTGTTGCTTTTTTGCCCTTTGTTTTGCACCTGTAAATTTAGTTCACTCTTCTGTAAGTGGTGGGGTTTGTTTTAGCCCCTGAAATTTGAAGTCGATTCCAATCTCGATTGGGCTATCAAGACGTTGATTTGTGTGGTTGATAGATGCGTTGAGAAATTTCTGCATTGGAAAGTTCCAAGTAAAGCTTTTAGTTCATTTCTTAGCTCATTTTATGCGCCCCGACATGCCCCGTGAGTTTGAAGCTTTGCAATTTGGCTGACATGCCTTCCAAAGAATGTATTGTCTGTAAGGATCATATTCTTGCTGCTTGTTCTTTATTTTTTTTTAAAAAAAACCAGACTTGTGAAATTGATGTAAGTTCGATGGTAAATCCTATTCATGGAAAACAAATCCACCCCCACCCAAACGAAAAACATTGATAAACCTTATCATTTCCATATTTGTATTTTTCATCTCGTTTCAGTTGATATTGAATGATCTTTATATGATGTTTTTCTTAATCTAATATTCTTTGTGAATCTAAGAGTAGTAGAAATTGATAACTGTCATCAGCATAAGGTTGGTCAGTTGGTGAACTATGGAGATGTACTGTTTGATCTGTTTTTGTTCACTAATTTTTTTTAGTTAATACTGTCATTTGAGTTCATTTTCTGTTAGTTGGTTGCTTATAGCTAAGTTGATATTGTAAGTTAAGTTTTTTTATTTTACAGTGGGTTATAGATACCACTCGTCCTTGATCTTGACAAATAGAGGAGATTATCATTTTTGCTGCATCTCTTGTGAGTTTTGGCTTGAAAATGCGTGGTGAATGTCTCATTCTTATAAAATAATGAACAGGTCTTTCAAGATTAACCACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGTCAGCTCGTAGAAGGTTGAACTCTCTCTTTCTCTCTCTCAAATGTACAATTCTGTAGACATTTGTTGTGGACTGCAACATATTGACATTGCCTCGACATTTGTACAGCGAAAGTTATAACCGACAGGGCAACGGGAAGATCAAAGGGATTCGGTTTTGTAACGTACGCCACAATAGAAGATGCTGAGAAAGCTAGAGAGGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGAGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGT

mRNA sequence

ATGGCTTTCCTCTCCAGTGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCATCTGCTTCCTCCATTCTGAAATCGCAGTGGACTACCCTTCGTCTCAGTTCAACTCTCACCTCGCCGAAGCTCTTCATCAGTGGTCTTTCAAGATTAACCACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGTCAGCTCGTAGAAGCGAAAGTTATAACCGACAGGGCAACGGGAAGATCAAAGGGATTCGGTTTTGTAACGTACGCCACAATAGAAGATGCTGAGAAAGCTAGAGAGGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGAGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGT

Coding sequence (CDS)

ATGGCTTTCCTCTCCAGTGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCATCTGCTTCCTCCATTCTGAAATCGCAGTGGACTACCCTTCGTCTCAGTTCAACTCTCACCTCGCCGAAGCTCTTCATCAGTGGTCTTTCAAGATTAACCACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGTCAGCTCGTAGAAGCGAAAGTTATAACCGACAGGGCAACGGGAAGATCAAAGGGATTCGGTTTTGTAACGTACGCCACAATAGAAGATGCTGAGAAAGCTAGAGAGGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGAGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGT

Protein sequence

MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

Homology

[Close]

BLAST of MS015899 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 282.0 bits (720), Expect = 3.0e-72
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAFLSSVRRVLNGSSSS+ASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of MS015899 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 130/146 (89.04%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAFLSSVRRVLNG-SSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60
           MAF S+VRRVLNG SSSSS+SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLV+AKV+TDRATGRSKGF FVTY+TI++AEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146

[Close]

BLAST of MS015899 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 2.3e-64
Identity = 132/148 (89.19%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF S+VRRVLNGSSSS  SS+L+SQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+
Sbjct: 1   MAFFSTVRRVLNGSSSS--SSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQ---SETSEFGIRTNKTIGWCG 146
           RPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of MS015899 vs. NCBI nr
Match: XP_008447620.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 2.3e-64
Identity = 127/145 (87.59%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF S+VRRVL+GSS SS+SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of MS015899 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.4 bits (651), Expect = 3.0e-64
Identity = 134/147 (91.16%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF S+VRRVLNGSSSS  SS+L+SQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+
Sbjct: 1   MAFFSTVRRVLNGSSSS--SSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of MS015899 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-24
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 38  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAR 97
           S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV YAT+ED+ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 98  EGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 132
            GM+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of MS015899 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-16
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 40  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREG 99
           KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+A+ ++A+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 100 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 127
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of MS015899 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-16
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 33  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIED 92
           SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T E+
Sbjct: 71  SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEE 130

Query: 93  AEKAREGMNAKFLDGWVIFVDPAKPREP-------RPPPQPQSETSEF 134
           A KA +GM+ KFLDG VIFV+ AK R         R  P+PQS+   F
Sbjct: 131 AMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178

[Close]

BLAST of MS015899 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-15
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 40  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREG 99
           +LF++GLS  T+++ L+ AF  FG+LVE K+I D+ + RSKG+ F+ Y T E    A + 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 100 MNAKFLDGWVIFVDPAKPR-EPRPPPQPQSETSEFGIRTNKTIG 143
           MN + ++GW+I VD AK R   R PP   S  S   +R+    G
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQVLRSRYHTG 399

[Close]

BLAST of MS015899 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.8e-15
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 33  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIED 92
           S  + + KLFI+GLS  T+++ L+ AF  FG+LVE K+I D+ + RSKG+ F+ Y T E 
Sbjct: 276 SPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335

Query: 93  AEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGI 136
           A  A + MN K ++GW+I VD AK    +P  Q +S+ S FG+
Sbjct: 336 AGTALKEMNGKIINGWMIVVDVAK---TKPFRQNRSQPS-FGL 374

[Close]

BLAST of MS015899 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAFLSSVRRVLNGSSSS+ASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of MS015899 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 132/148 (89.19%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF S+VRRVLNGSSSS  SS+L+SQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+
Sbjct: 1   MAFFSTVRRVLNGSSSS--SSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQ---SETSEFGIRTNKTIGWCG 146
           RPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of MS015899 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 127/145 (87.59%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF S+VRRVL+GSS SS+SSIL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of MS015899 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF S+VRRVLNGSSSS  SS+L+SQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+
Sbjct: 1   MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of MS015899 vs. ExPASy TrEMBL
Match: A0A7N2LNA5 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.8e-59
Identity = 119/145 (82.07%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF+S +RRVL G  SS+ASSIL+S +T++R ++TLTSPKLFISGLSRLTTD+KLQEAFS
Sbjct: 1   MAFVSGIRRVL-GGGSSTASSILQSHYTSIRFNTTLTSPKLFISGLSRLTTDQKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
            FGQLV+AKVITDRATGRSKGFGFV+YATIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  PFGQLVDAKVITDRATGRSKGFGFVSYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 146
           RPPPQPQ E SE G RTN+T+GWCG
Sbjct: 121 RPPPQPQQEPSETGFRTNRTVGWCG 144

[Close]

BLAST of MS015899 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-49
Identity = 103/146 (70.55%), Postives = 119/146 (81.51%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSSSASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF+SS RR++ GS     SS+L S    +R  STLTSP+LF+SGLSRLTT+EKLQ+AF+
Sbjct: 1   MAFVSSFRRLVAGS-----SSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFA 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+A+VITDR +GRSKGFGFVTYATIEDAEKA+  MNAKFLDGWVIFVDPA+PREP
Sbjct: 61  SFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 120

Query: 121 RPPPQ--PQSETSEFGIRTNKTIGWC 145
           R P Q  P   +SE G  TNKTIGWC
Sbjct: 121 RRPLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of MS015899 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-25
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 38  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAR 97
           S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV YAT+ED+ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 98  EGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 132
            GM+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of MS015899 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 40  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREG 99
           KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+A+ ++A+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 100 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 127
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of MS015899 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-17
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 33  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIED 92
           SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T E+
Sbjct: 71  SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEE 130

Query: 93  AEKAREGMNAKFLDGWVIFVDPAKPREP-------RPPPQPQSETSEF 134
           A KA +GM+ KFLDG VIFV+ AK R         R  P+PQS+   F
Sbjct: 131 AMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178

[Close]

BLAST of MS015899 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-16
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 38  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAR 97
           S +LF+S LS  TTD+ L++ FS FGQ+ EA++I D  T R KGFGF+T+ + +DA KA 
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 98  EGMNAKFLDGWVIFVDPAKPRE 120
           + ++ K +DG +IFV+ AK  E
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAE 87

The following BLAST results are available for this feature:

BLAST of MS015899 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143719.1	3.0e-72	99.31	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_031739912.1	1.8e-64	89.04	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]
XP_022972736.1	2.3e-64	89.19	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]
XP_008447620.1	2.3e-64	87.59	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_023517167.1	3.0e-64	91.16	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ...	[more]

BLAST of MS015899 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	3.2e-24	57.45	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	2.4e-16	48.45	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FX45	4.1e-16	43.52	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q6YWP9	4.6e-15	41.35	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q8L440	7.8e-15	44.66	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of MS015899 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ59	1.5e-72	99.31	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1I6S8	1.1e-64	89.19	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A1S3BHV3	1.1e-64	87.59	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1HDN1	2.5e-64	91.16	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A7N2LNA5	1.8e-59	82.07	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of MS015899 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	2.2e-49	70.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	2.2e-25	57.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.7e-17	48.45	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.9e-17	43.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	3.2e-16	48.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 40..113 e-value: 1.9E-26 score: 103.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 41..107 e-value: 6.1E-21 score: 74.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 39..117 score: 18.376226
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 24..140 e-value: 2.6E-28 score: 100.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..145
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 1..145
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..145
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 38..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015899.1	MS015899.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding