MS015898 (gene) Bitter gourd (TR) v1

Overview


Name	MS015898
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Histone H2A
Location	scaffold943_2: 741494 .. 744390 (-)
RNA-Seq Expression	MS015898
Synteny	MS015898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCGGCGGCAAGGCGAAGAAAGGCGCGGCCGGTAGAAGGGGCGGCGGTCCTAAGAAGAAGCCGGTCTCTCGGTCTGTCAAAGCCGGCCTGCAGTTTCCGGTCGGCAGAATCGGCCGCTACCTGAAGAACGGCCGCTACTCTCAGCGAGTCGGAACCGGCGCTCCGGTTTACCTCGCCGCCGTGCTCGAGTACCTGGCTGCAGAGGTGAATTTCTACTCACTTTCGATTCCACTACTCGCTCTCTTAATTTAGGGTTTTTTTCTTCTTCTTTAACTTCTATCGGAGGATTACACGTTTTGAATGTCTTGAATTTGAAGTGCATTTTTTCTTTTCCTTTTGTAGCTGGTTTAGAATTTGATTTTCTTGCCCTTTTTTAGGAGATTTAATCCCCAATTTGAATTAGGTGCTTTTTCGTCATTTCTATTCTCTGATTTCTCTCTGTTTTTGTATTTGTATGTGTAGAAGAAGTCCCTTCTAAGTTTGAAAGAAGAACCTTTGGTGAAGATTATGTTGTTGGTTTTCTGTTTTTAGAAATTTAAATTCACATATGGATGTTTTTTCTTAATTAGTTTTAAATATATTTTTTAACTTTTTTTTTTGGGTAATATTTCAACTTTGATTTTGTAAACCATTTCGAAAGTATGAACTGAAAATATTGGAAAATTTTAGGCTCTTTTCATGACGATTTTATTTTAGTTTTTTGTTTTTAAGAATTATGCTTACTTCTCCATTGATTTGGTATATTTTTCATCATTCGTTTAAACACATATAAATTTTTAGTGAAATTTTAAATAGAAGTACAATTTTTATAAGCTAAAAATACCTAGGGTTTTTAGGACTCGTTTGGTAAGGTTAAGAAAAATGAATTGCATAGTCACAACTCCCACAATTCACTTAAACAATTTTTGGAACAAAGTGGAAATGGAAACCAGAAAAAAGAAACTTGTTTTGATTGTTTCCACTTGGTGCCCGTTTGGTAACGTTCCAATTTTCTTAAGAAATTTAAGCATTTTACAACTAACTATGTTTCTTGTTGTCGTTGTTTTTTTTTTTTTGCAACATTCTCTAAATTGTATTGAAATTTTGGAAACTACCAAAACTTTCTTTCTAGTTACCATTTCCAATTTGTTCTAATACATAAATAAAAATATTGTTTTATGATACTTGAATTATGAATGTTAGACCATGCAATTCATTTTTCTTTATTAAAAACGAGGAAATAAAAACATTACCAAACGAGTTGTAAAATTTTTAGATTTCTTAAGAAATTGGAAACGGAGAAACAAAAAATGGGAACGTTACCAAACGAGCTCATAGTTGTAAAATTTTTAGATTTCTTAAGAAATTGGACCAAACGCTTGCTTTTAGGTCTCTCTCAGCTGTCCTTTAGGTTCTGATTCTAATGCTTTATGGAAACAACTTTTGAATGCTAAAAGCAAAGGGCCAATGTGAGATTGTTTAGCATTTAAAAAAAAAGTGTTTGAATAGTCGGTAATGTTGATTCTTTCCACCCTACATTTTTTTTTCCTGAAATCCGTGTGTCCGGGCCAGTTTATGCGGGCCAACAACCCGACCCTACTACATTTGGTTGACAATGTAGCTCTTAGGATATTAAATCCTAGGTAGGTGGTCACCATGATTTGAACTCATTCTCTCTGAGCCATTTGCTATTTTCATTGACCATTATTGATTACTAGGTGATTCCATGATGGTTTTTCCACCCTGCACCTTGTAGATCCTTTTTTAAAAATAGAAATAAAAATACAAAAAATGGAAACATATATCACCTTTTTTAAGTCCATTCTGAAATAGAACTTCTTCTGTTCTATGTTTTCTATCAAGAGAGATTTTAATCATCCAGTGAAGTTTAGTAGAATTATTTTATTCCCAGATGGAATCTTACACAAATACATCCACGCACATTTAGAGAGGATGTTTGACCTAAGAGTGGATTTGTTTAATCGGGATAGTTAATTGGCATGGACTTGTTTAGTTTGTGAAGTTTGTATTTAAAATGTAGAGTTGTGTAAGTTGGAGTTGTGCATGCTGGATTTATCCTGGCTGATTTTTTGTACCATTAGAATTAGATTCCAATTATTTTTTCAAATTTTAGTTAATAAAGACATCAATTCTAAGATTGAGCTTTTAAGTTATATTGTTTTATGGATATTTTATAGTTTTGTTTAAATAGCTGTTTTGATTAAGAGAAACCTAACCATTTTGATGATAATACAATAAGTGATATCATATACTAAGGGGTTGGATTATCTTGTATTAAGAATACCTATAAAAGATTTTCCTGTTTGGCTATTACTTATGGGTTTGGAGGGAGATCCTTAATTTACATATAGCCCAAATGACAATCACAACCTAATGAAATGAAATATTGGTTATTTTTTTAATTGAAAAAAAAAGAAGAATATTCATAACAAATTAAAGCTTAAATTTTTGGGTTTAGTAGTGATATCCTGCATTCGAACCTTAATTTCGTTTCCCCCATCATTTGTCGGGCCTTGTGTAAATTTCCAAGCTCGAGTGAAGTGGAATGTTAAGAATACCTACGAAAGACTATACCTACGAAAGACTTAAGTATTCCATAATCTATCAGTATAAAGTACTTTTGGGTAATGATCAATAATGTGATGTAGGTTTTGGAATTGGCTGGGAATGCTGCGAGAGACAACAAGAAGAACAGGATTATCCCAAGGCACGTGCTTTTGGCAGTGAGGAACGACGAGGAGCTCGGTAAGCTTCTCGCCGGAGTGACGATTGCTCATGGCGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCAGAGAGGGCAGCAGCAGGGAAGGAACCCAAGTCCCCATCCAAGGGCACCAAGTCCCCCAAGAAGGCC

mRNA sequence

ATGGATTCCGGCGGCAAGGCGAAGAAAGGCGCGGCCGGTAGAAGGGGCGGCGGTCCTAAGAAGAAGCCGGTCTCTCGGTCTGTCAAAGCCGGCCTGCAGTTTCCGGTCGGCAGAATCGGCCGCTACCTGAAGAACGGCCGCTACTCTCAGCGAGTCGGAACCGGCGCTCCGGTTTACCTCGCCGCCGTGCTCGAGTACCTGGCTGCAGAGGTTTTGGAATTGGCTGGGAATGCTGCGAGAGACAACAAGAAGAACAGGATTATCCCAAGGCACGTGCTTTTGGCAGTGAGGAACGACGAGGAGCTCGGTAAGCTTCTCGCCGGAGTGACGATTGCTCATGGCGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCAGAGAGGGCAGCAGCAGGGAAGGAACCCAAGTCCCCATCCAAGGGCACCAAGTCCCCCAAGAAGGCC

Coding sequence (CDS)

ATGGATTCCGGCGGCAAGGCGAAGAAAGGCGCGGCCGGTAGAAGGGGCGGCGGTCCTAAGAAGAAGCCGGTCTCTCGGTCTGTCAAAGCCGGCCTGCAGTTTCCGGTCGGCAGAATCGGCCGCTACCTGAAGAACGGCCGCTACTCTCAGCGAGTCGGAACCGGCGCTCCGGTTTACCTCGCCGCCGTGCTCGAGTACCTGGCTGCAGAGGTTTTGGAATTGGCTGGGAATGCTGCGAGAGACAACAAGAAGAACAGGATTATCCCAAGGCACGTGCTTTTGGCAGTGAGGAACGACGAGGAGCTCGGTAAGCTTCTCGCCGGAGTGACGATTGCTCATGGCGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCAGAGAGGGCAGCAGCAGGGAAGGAACCCAAGTCCCCATCCAAGGGCACCAAGTCCCCCAAGAAGGCC

Protein sequence

MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAAGKEPKSPSKGTKSPKKA

Homology

[Close]

BLAST of MS015898 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60
           MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL
Sbjct: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 152
           NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA
Sbjct: 121 NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of MS015898 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 4.2e-69
Identity = 147/152 (96.71%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGG-PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 152
           INPVLLPKKSERAAA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of MS015898 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 7.2e-69
Identity = 148/153 (96.73%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAGKEPKSPSKGTKSPKKA 152
           INPVLLPKKSERA  A KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of MS015898 vs. NCBI nr
Match: KAE9455642.1 (hypothetical protein C3L33_12460, partial [Rhododendron williamsianum])

HSP 1 Score: 267.7 bits (683), Expect = 6.1e-68
Identity = 141/151 (93.38%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60
           M+SGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVYL
Sbjct: 1   MESGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 152
           NPVLLPKK+E+AAA KEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKNEKAAA-KEPKSPSKATKSPKKA 150

[Close]

BLAST of MS015898 vs. NCBI nr
Match: KAG5553850.1 (hypothetical protein RHGRI_011654 [Rhododendron griersonianum])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 140/151 (92.72%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60
           M++GGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVYL
Sbjct: 1   METGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 152
           NPVLLPKK+E+AAA KEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKNEKAAA-KEPKSPSKATKSPKKA 150

[Close]

BLAST of MS015898 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.1e-67
Identity = 136/153 (88.89%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60
           MD+G K KKGA  R+GGGPKKKPVSRSVKAGLQFPVGRIGR+LK GRY+QRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAG--KEPKSPSKGTKSPKKA 152
           NPVLLPKK+E+AAA   KEPKSP+K TKSPKKA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]

BLAST of MS015898 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.9e-66
Identity = 137/153 (89.54%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKGAAGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAA-GKEPKSPSKGTKSPKKA 152
           INP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of MS015898 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-63
Identity = 132/152 (86.84%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 3   SGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAA 62
           +GGK KKGAAGR+ GGP+KK VSRSVKAGLQFPVGRIGRYLK GRY+QR+GTGAPVYLAA
Sbjct: 8   AGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAA 67

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINP
Sbjct: 68  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP 127

Query: 123 VLLPKKS--ERAAAGKEPKSPSKGT-KSPKKA 152
           VLLPKK+  + AAAGKE KSP K   KSPKKA
Sbjct: 128 VLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

[Close]

BLAST of MS015898 vs. ExPASy Swiss-Prot
Match: Q94E96 (Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-63
Identity = 132/152 (86.84%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 3   SGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAA 62
           +GGK KKGAAGR+ GGP+KK VSRSVKAGLQFPVGRIGRYLK GRY+QR+GTGAPVYLAA
Sbjct: 8   AGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAA 67

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINP
Sbjct: 68  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP 127

Query: 123 VLLPKKS--ERAAAGKEPKSPSKGT-KSPKKA 152
           VLLPKK+  + AAAGKE KSP K   KSPKKA
Sbjct: 128 VLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

[Close]

BLAST of MS015898 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.1e-63
Identity = 130/153 (84.97%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60
           MD+  K KKGA GR+GGGP+KK V+RS++AGLQFPVGRIGRYLK GRY+QRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERA-AAGKEPKSPS-KGTKSPKKA 152
           NPVLLPKK+ER+    KEPKSP  K  KSPKKA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of MS015898 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.0e-74
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60
           MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL
Sbjct: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 152
           NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA
Sbjct: 121 NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of MS015898 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 147/152 (96.71%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGG-PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 152
           INPVLLPKKSERAAA KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of MS015898 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69
Identity = 148/153 (96.73%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAGKEPKSPSKGTKSPKKA 152
           INPVLLPKKSERA  A KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of MS015898 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69
Identity = 148/153 (96.73%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGG-GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERA-AAGKEPKSPSKGTKSPKKA 152
           INPVLLPKKSERA  A KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of MS015898 vs. ExPASy TrEMBL
Match: A0A6A4LE10 (Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.0e-68
Identity = 141/151 (93.38%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60
           M+SGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRY+QRVGTGAPVYL
Sbjct: 1   MESGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 152
           NPVLLPKK+E+AAA KEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKNEKAAA-KEPKSPSKATKSPKKA 150

[Close]

BLAST of MS015898 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 251.5 bits (641), Expect = 4.2e-67
Identity = 137/153 (89.54%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKGAAGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAA-GKEPKSPSKGTKSPKKA 152
           INP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of MS015898 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 238.0 bits (606), Expect = 4.8e-63
Identity = 137/177 (77.40%), Postives = 143/177 (80.79%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           MDSG K KKGAAGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAAA-GKEPKSPSKGTKSPKKA 152
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSE+AA+  K PKSPSK TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of MS015898 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 201.1 bits (510), Expect = 6.5e-52
Identity = 113/152 (74.34%), Postives = 126/152 (82.89%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60
           M+S GK KK   GR+  G PK K VS+S+KAGLQFPVGRI R+LK GRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 152
           IN VLLPKKS  A    E K+     KSPKKA
Sbjct: 121 INSVLLPKKS--ATKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of MS015898 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 197.2 bits (500), Expect = 9.4e-51
Identity = 110/146 (75.34%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 6   KAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLE 65
           K  +GA GR+ GG +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVLE
Sbjct: 9   KPTRGAGGRK-GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLE 68

Query: 66  YLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 125
           YLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLL
Sbjct: 69  YLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLL 128

Query: 126 PKKSERAAAGKEPKSPSKGTKSPKKA 152
           PKKS  +++  E  S    TKSPKKA
Sbjct: 129 PKKSTASSSQAEKAS---ATKSPKKA 150

[Close]

BLAST of MS015898 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 176.0 bits (445), Expect = 2.2e-44
Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 16  GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYLAAVLEYLAAEVLELA 75
           G G  KK  SRS KAGLQFPVGRI R+LKNG+Y+ RVG GAPVYLAAVLEYLAAEVLELA
Sbjct: 9   GSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 76  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 130
           GNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKA 122

The following BLAST results are available for this feature:

BLAST of MS015898 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143711.1	1.7e-73	100.00	histone H2A [Momordica charantia]	[more]
XP_004142082.1	4.2e-69	96.71	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_008447608.1	7.2e-69	96.73	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
KAE9455642.1	6.1e-68	93.38	hypothetical protein C3L33_12460, partial [Rhododendron williamsianum]	[more]
KAG5553850.1	1.4e-67	92.72	hypothetical protein RHGRI_011654 [Rhododendron griersonianum]	[more]

BLAST of MS015898 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M531	4.1e-67	88.89	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q9LZ46	5.9e-66	89.54	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
A2WQG7	2.1e-63	86.84	Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3...	[more]
Q94E96	2.1e-63	86.84	Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 ...	[more]
Q2HU65	6.1e-63	84.97	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]

BLAST of MS015898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR43	8.0e-74	100.00	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A0A0KXF2	2.0e-69	96.71	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A5A7U1I6	3.5e-69	96.73	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	3.5e-69	96.73	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A6A4LE10	3.0e-68	93.38	Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE...	[more]

BLAST of MS015898 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	4.2e-67	89.54	histone H2A 12	[more]
AT5G02560.2	4.8e-63	77.40	histone H2A 12	[more]
AT5G59870.1	6.5e-52	74.34	histone H2A 6	[more]
AT5G27670.1	9.4e-51	75.34	histone H2A 7	[more]
AT3G20670.1	2.2e-44	78.07	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 80..94 score: 73.78 coord: 51..66 score: 86.43 coord: 22..44 score: 69.23 coord: 108..126 score: 75.79 coord: 66..79 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 11..131 e-value: 3.7E-78 score: 275.7
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 19..128 e-value: 2.81006E-67 score: 197.943
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 100..133 e-value: 2.6E-18 score: 65.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 10..136 e-value: 2.7E-63 score: 213.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..133
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 20..97 e-value: 1.6E-12 score: 47.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..151
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..146
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 7..146
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 30..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015898.1	MS015898.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity