MS015895 (gene) Bitter gourd (TR) v1

Overview


Name	MS015895
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RAB GTPase homolog 8A
Location	scaffold943_2: 723031 .. 725412 (-)
RNA-Seq Expression	MS015895
Synteny	MS015895

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGGTGTGGGAAAAAGTTGTCTTCTTTTGCGTTTCTCGGATGGTTCCTTTACTACAAGTTTCATCACAACCATTGGGTAGGTGCTTGTTAAGCTACAAGTTTTTTGAGTATGTGGTTTTCCCACATTATTCTTGATTTGAGTAGGCTGAACGTTCTTCGACAGCATTGATTTTAAGATAAGGACCATAGAGCTGGATGGAAAGAGGATCAAGTTGCAAATTTGGGATACTGCTGGTCAGGAGCGGTTTAGAACAATTACTACTGGTTAGTGTCTAGCTTTTAAGCTGAATATATTATGTTGTGCTGTAATAGATTGGACTAAAAGATCTCAACATCTTTGATTGTATTTGATATCTTTAAGGTTATAGGATCAAACTTATTGAATTTGCCAACTTGTGCATGATTTTAATTGATCAATTTATTAGTAACTTTATTCATAGGTTAGAGGTTCAAGTCTCCATTTGTTTGAATTCAAAGACCATGTTGAATCTAAATCATTTCTTAGATGTTTTAATTAGTTTTCATGTTGAGACCTTTCTTTCTTGTTGTCTAGCAAATTTTAGTTTTCAAGATCCCATTGTTACTTGTTATATGGACTCAAATAAATGTCCATCCAATATTTTCATCAAAATAAGTAGATAAACATTTGACCTTATAAGTTTAAGATAAAAATGCAAAAATCACCCTTGAACTATAGTGATTGCTATAATTATATTTTGAACTTCCAACTGTAGCTAGTTGCCTCCAAGGATAGCTTAGTTGGCAAAGACTTAGGGTCTCTTAGTCATACTAGCTAGAGGTCTCGGGTTTCAACCTTCTTAGTGAGCTTAATTTCAAAAACCCTTGATGTCTCCTGGGCCTTGGGGCGGGCATGGGTGTCCCTGAGTATAAGGGAGCAAAGCTCCGACTCCTAGTTAAAAAAATAAAAGCAAAATGGAAAAAACTATAGCCAGGCTAATTGGTGTTGCTTCATTTTTTTATAAATTTATTTTATTAAATTTTTGAACAAGAAAAAAGGTGTCACCTCAATTTGAACATTGATAACACGCCTCTTTCCTTATCCCAACATTTTTTACTTGGATCATATAATGTAACTACCGTTTTCTCTCACGCTATCTTTTTGGCCTATGTAAGAGTCAACTAATGTTCTTCATCCGAGTGGTTCAGAAAGTTACCCAATATGATAGTGGTGGATAACCACCCTATTTTCTCTCGATTGCCTATTTCTCAATGATTGACGCTGATTTTATACACCACTCTTATACATTATTGTTGGTAGTGCCAATTCAGAAACACACACTGATGGGACCTTAATTCATTAACTAATCAATTAACTATATTCTGATGTTACAATTTTTTTTCTTTGGTAAATTATCGTTTATTTTTGAGGAAGTAATACACATTAAATATAATTTTATTTGTCCAATTGTCAATGATATTTTCATGATCAATATTTTAGTTATTAAGTTTAATACAACTTTTACAATCATTGATATTTTCATAATCAATATTTTAGTTTCCAAATATTCTTGAATATAAAATTGAAGGAGTATAGTTGCCAAAATATTGTTACAACTCATGTAGTTCAGGGGTGATTTTTTCAGTTTCCCCCAAGTTTCACTAATTCTGCACTTTTTTATCCTCTACAGCTTATTATCGTGGAGCCATGGGTATTTTGCTTGTGTACGACGTCACTGATGAGTCCTCCTTTAACAGTAATGTTATCTCCTTCCATATTTCTTATTAGCTTCACAGTATTTTAGTGACCATCTATTTGTGAGTCTCTAAGTCCCGATCTTCCATTAATCTTCACCACAATTTTGAGAAGATTCCTTCAATGCTTTTATCAGTGCCAATGAATGTACTGGAGTTCTTTTTTTGTAGACAATAATCTTCTTAGCTTCTCCTAGCTTTATGACTTAAGCCGATTTCTTTCTGCAGACATTAGGAACTGGATTCGTAACATTGAACAACATGCTTCTGACAATGTTAACAAAATACTGGTGGGTAACAAGGCTGACATGGATGAGAGCAAAAGGGTATGCCCTCTCTCCTTCTCTCTCCATACGTGTCTTCCTGCCTGTGTTTTCCATGTCAGTTGACATTTTTTTGACAATAATCTTCTCTCAGGCTGTCCCCACCTCAAAGGGTCAAGCTCTTGCAGATGAATATGGCATCAAGTTTTTTGAGACTGTGAGTTATGCATGTTCGCTCTGAGAACTATAATAAAATACCTATTGGGCGTTCTATTCTAAAGATCTTATGTTTTACAGAGTGCTAAGACGAACTTAAATGTGGAAGAAGTTTTCTTCTCAATAGCTAGGGATATTAAACAAAGACTCGCAGATACTGATTCAAAAGCAGAGGTATGGTCTTTTAAA

mRNA sequence

GCAGGTGTGGGAAAAAGTTGTCTTCTTTTGCGTTTCTCGGATGGTTCCTTTACTACAAGTTTCATCACAACCATTGGCATTGATTTTAAGATAAGGACCATAGAGCTGGATGGAAAGAGGATCAAGTTGCAAATTTGGGATACTGCTGGTCAGGAGCGGTTTAGAACAATTACTACTGCTTATTATCGTGGAGCCATGGGTATTTTGCTTGTGTACGACGTCACTGATGAGTCCTCCTTTAACAACATTAGGAACTGGATTCGTAACATTGAACAACATGCTTCTGACAATGTTAACAAAATACTGGTGGGTAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTCCCCACCTCAAAGGGTCAAGCTCTTGCAGATGAATATGGCATCAAGTTTTTTGAGACTAGTGCTAAGACGAACTTAAATGTGGAAGAAGTTTTCTTCTCAATAGCTAGGGATATTAAACAAAGACTCGCAGATACTGATTCAAAAGCAGAGGTATGGTCTTTTAAA

Coding sequence (CDS)

GCAGGTGTGGGAAAAAGTTGTCTTCTTTTGCGTTTCTCGGATGGTTCCTTTACTACAAGTTTCATCACAACCATTGGCATTGATTTTAAGATAAGGACCATAGAGCTGGATGGAAAGAGGATCAAGTTGCAAATTTGGGATACTGCTGGTCAGGAGCGGTTTAGAACAATTACTACTGCTTATTATCGTGGAGCCATGGGTATTTTGCTTGTGTACGACGTCACTGATGAGTCCTCCTTTAACAACATTAGGAACTGGATTCGTAACATTGAACAACATGCTTCTGACAATGTTAACAAAATACTGGTGGGTAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTCCCCACCTCAAAGGGTCAAGCTCTTGCAGATGAATATGGCATCAAGTTTTTTGAGACTAGTGCTAAGACGAACTTAAATGTGGAAGAAGTTTTCTTCTCAATAGCTAGGGATATTAAACAAAGACTCGCAGATACTGATTCAAAAGCAGAGGTATGGTCTTTTAAA

Protein sequence

AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK

Homology

[Close]

BLAST of MS015895 vs. NCBI nr
Match: MBA0830371.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 334.7 bits (857), Expect = 4.6e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 7   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 66

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 67  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 126

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW 169
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW
Sbjct: 127 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW 174

[Close]

BLAST of MS015895 vs. NCBI nr
Match: MBA0824195.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 6   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 65

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 66  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 125

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW 169
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSK+EVW
Sbjct: 126 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEVW 173

[Close]

BLAST of MS015895 vs. NCBI nr
Match: KJB16907.1 (hypothetical protein B456_002G253800 [Gossypium raimondii])

HSP 1 Score: 332.4 bits (851), Expect = 2.3e-87
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW 169
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSK+EVW
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEVW 191

[Close]

BLAST of MS015895 vs. NCBI nr
Match: MBA0615853.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 7   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 66

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 67  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 126

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV 168
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV
Sbjct: 127 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV 173

[Close]

BLAST of MS015895 vs. NCBI nr
Match: MBA0684488.1 (hypothetical protein [Gossypium aridum] >MBA0800810.1 hypothetical protein [Gossypium harknessii])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 7   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 66

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 67  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 126

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV 168
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV
Sbjct: 127 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV 173

[Close]

BLAST of MS015895 vs. ExPASy Swiss-Prot
Match: P28186 (Ras-related protein RABE1c OS=Arabidopsis thaliana OX=3702 GN=RABE1C PE=1 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-87
Identity = 162/171 (94.74%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+K
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDS+AE  + K
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIK 194

[Close]

BLAST of MS015895 vs. ExPASy Swiss-Prot
Match: Q39433 (Ras-related protein RAB1BV OS=Beta vulgaris OX=161934 GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-86
Identity = 160/166 (96.39%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+K
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAE 167
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD+D++ E
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQE 189

[Close]

BLAST of MS015895 vs. ExPASy Swiss-Prot
Match: O24466 (Ras-related protein RABE1a OS=Arabidopsis thaliana OX=3702 GN=RABE1A PE=1 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-86
Identity = 160/171 (93.57%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD+VNKILVGNKADMDESKRAVP SK
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYG+KFFETSAKTNLNVEEVFFSIA+DIKQRLADTD++AE  + K
Sbjct: 144 GQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIK 194

[Close]

BLAST of MS015895 vs. ExPASy Swiss-Prot
Match: Q9LZD4 (Ras-related protein RABE1d OS=Arabidopsis thaliana OX=3702 GN=RABE1D PE=1 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 9.3e-84
Identity = 154/171 (90.06%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSD +FTTSFITTIGIDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASDNVNKILVGNKADMDESKRAVPT+K
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKADMDESKRAVPTAK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYGIKFFETSAKTNLNVE VF SIA+DIKQRL +TD+KAE    K
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAEPQGIK 194

[Close]

BLAST of MS015895 vs. ExPASy Swiss-Prot
Match: Q9SF91 (Ras-related protein RABE1e OS=Arabidopsis thaliana OX=3702 GN=RABE1E PE=1 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.3e-82
Identity = 152/171 (88.89%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSD +FTTSFITTIGIDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASD+VNKILVGNKADMDESKRAVPTSK
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYGIKFFETSAKTN NVE+VF SIA+DIKQRL ++D+KAE    K
Sbjct: 144 GQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEPQGIK 194

[Close]

BLAST of MS015895 vs. ExPASy TrEMBL
Match: A0A7J9J7J9 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_014908 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.2e-88
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 7   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 66

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 67  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 126

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW 169
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW
Sbjct: 127 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW 174

[Close]

BLAST of MS015895 vs. ExPASy TrEMBL
Match: A0A7J9ISQ0 (Uncharacterized protein (Fragment) OS=Gossypium armourianum OX=34283 GN=Goarm_020876 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.0e-88
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 6   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 65

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 66  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 125

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW 169
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSK+EVW
Sbjct: 126 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEVW 173

[Close]

BLAST of MS015895 vs. ExPASy TrEMBL
Match: A0A0D2MFY4 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G253800 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVW 169
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSK+EVW
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEVW 191

[Close]

BLAST of MS015895 vs. ExPASy TrEMBL
Match: A0A7J8RQI2 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_015961 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.5e-87
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 7   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 66

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 67  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 126

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV 168
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV
Sbjct: 127 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV 173

[Close]

BLAST of MS015895 vs. ExPASy TrEMBL
Match: A0A7J8XB31 (Uncharacterized protein (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_026072 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.5e-87
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 7   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 66

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK
Sbjct: 67  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 126

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV 168
           GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV
Sbjct: 127 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEV 173

[Close]

BLAST of MS015895 vs. TAIR 10
Match: AT5G59840.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 323.6 bits (828), Expect = 9.9e-89
Identity = 163/171 (95.32%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP SK
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPKSK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYGIKFFETSAKTNLNVEEVFFSIA+DIKQRLADTDS+AE  + K
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDSRAEPATIK 194

[Close]

BLAST of MS015895 vs. TAIR 10
Match: AT3G46060.1 (RAB GTPase homolog 8A )

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-88
Identity = 162/171 (94.74%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+K
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDS+AE  + K
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIK 194

[Close]

BLAST of MS015895 vs. TAIR 10
Match: AT3G46060.2 (RAB GTPase homolog 8A )

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-88
Identity = 162/171 (94.74%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+K
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDS+AE  + K
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIK 194

[Close]

BLAST of MS015895 vs. TAIR 10
Match: AT3G46060.3 (RAB GTPase homolog 8A )

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-88
Identity = 162/171 (94.74%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+K
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDS+AE  + K
Sbjct: 144 GQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIK 194

[Close]

BLAST of MS015895 vs. TAIR 10
Match: AT3G53610.1 (RAB GTPase homolog 8 )

HSP 1 Score: 319.7 bits (818), Expect = 1.4e-87
Identity = 160/171 (93.57%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   AGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 60
           +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA
Sbjct: 24  SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83

Query: 61  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK 120
           YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD+VNKILVGNKADMDESKRAVP SK
Sbjct: 84  YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSK 143

Query: 121 GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEVWSFK 172
           GQALADEYG+KFFETSAKTNLNVEEVFFSIA+DIKQRLADTD++AE  + K
Sbjct: 144 GQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIK 194

The following BLAST results are available for this feature:

BLAST of MS015895 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0830371.1	4.6e-88	100.00	hypothetical protein [Gossypium armourianum]	[more]
MBA0824195.1	1.0e-87	99.40	hypothetical protein [Gossypium armourianum]	[more]
KJB16907.1	2.3e-87	98.81	hypothetical protein B456_002G253800 [Gossypium raimondii]	[more]
MBA0615853.1	1.1e-86	100.00	hypothetical protein [Gossypium davidsonii]	[more]
MBA0684488.1	1.1e-86	100.00	hypothetical protein [Gossypium aridum] >MBA0800810.1 hypothetical protein [Goss...	[more]

BLAST of MS015895 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28186	1.8e-87	94.74	Ras-related protein RABE1c OS=Arabidopsis thaliana OX=3702 GN=RABE1C PE=1 SV=1	[more]
Q39433	1.2e-86	96.39	Ras-related protein RAB1BV OS=Beta vulgaris OX=161934 GN=RAB1BV PE=2 SV=1	[more]
O24466	2.0e-86	93.57	Ras-related protein RABE1a OS=Arabidopsis thaliana OX=3702 GN=RABE1A PE=1 SV=1	[more]
Q9LZD4	9.3e-84	90.06	Ras-related protein RABE1d OS=Arabidopsis thaliana OX=3702 GN=RABE1D PE=1 SV=1	[more]
Q9SF91	1.3e-82	88.89	Ras-related protein RABE1e OS=Arabidopsis thaliana OX=3702 GN=RABE1E PE=1 SV=1	[more]

BLAST of MS015895 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9J7J9	2.2e-88	100.00	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_014908 PE=4 S...	[more]
A0A7J9ISQ0	5.0e-88	99.40	Uncharacterized protein (Fragment) OS=Gossypium armourianum OX=34283 GN=Goarm_02...	[more]
A0A0D2MFY4	1.1e-87	98.81	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G253800 PE=4 ...	[more]
A0A7J8RQI2	5.5e-87	100.00	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_015961 PE=4 SV...	[more]
A0A7J8XB31	5.5e-87	100.00	Uncharacterized protein (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_026072 ...	[more]

BLAST of MS015895 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59840.1	9.9e-89	95.32	Ras-related small GTP-binding family protein	[more]
AT3G46060.1	1.3e-88	94.74	RAB GTPase homolog 8A	[more]
AT3G46060.2	1.3e-88	94.74	RAB GTPase homolog 8A	[more]
AT3G46060.3	1.3e-88	94.74	RAB GTPase homolog 8A	[more]
AT3G53610.1	1.4e-87	93.57	RAB GTPase homolog 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 132..154 score: 47.39 coord: 16..32 score: 34.3 coord: 34..56 score: 57.68 coord: 96..109 score: 51.25
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 2..157 e-value: 8.8E-30 score: 114.9
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 1..166 e-value: 3.7E-4 score: 10.5
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 1..157 e-value: 2.4E-95 score: 332.7
None	No IPR available	PANTHER	PTHR47980	LD44762P	coord: 1..167
None	No IPR available	PANTHER	PTHR47980:SF5	BNAA07G37610D PROTEIN	coord: 1..167
None	No IPR available	PROSITE	PS51420	RHO	coord: 1..159 score: 10.906267
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..171 score: 34.902073
None	No IPR available	CDD	cd01867	Rab8_Rab10_Rab13_like	coord: 2..157 e-value: 5.43002E-110 score: 308.428
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 1..157 e-value: 2.0E-12 score: 39.4
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 2..155 e-value: 2.2E-62 score: 209.4
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..171 score: 20.270792
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 2..147 e-value: 3.5E-28 score: 96.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..168 e-value: 1.0E-67 score: 229.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015895.1	MS015895.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding