MS015865 (gene) Bitter gourd (TR) v1

Overview
NameMS015865
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold943_2: 520848 .. 521027 (+)
RNA-Seq ExpressionMS015865
SyntenyMS015865
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAAACTACAGGACCAACCGGGCGAAAACTGAAGAAGGGCAGGCTTCCTCCTAAAAGAGGGAGTGTCAAACTAAAAATAATATCCAAGTTCTTTGAGATGGTGGTCGGATTTGTGTCGAAAGTAGGAGGAAGGCAGAACAAAAAGAGGATGGATCAGGCGACAACAGAAGAACCA

mRNA sequence

ATGGTGGAAACTACAGGACCAACCGGGCGAAAACTGAAGAAGGGCAGGCTTCCTCCTAAAAGAGGGAGTGTCAAACTAAAAATAATATCCAAGTTCTTTGAGATGGTGGTCGGATTTGTGTCGAAAGTAGGAGGAAGGCAGAACAAAAAGAGGATGGATCAGGCGACAACAGAAGAACCA

Coding sequence (CDS)

ATGGTGGAAACTACAGGACCAACCGGGCGAAAACTGAAGAAGGGCAGGCTTCCTCCTAAAAGAGGGAGTGTCAAACTAAAAATAATATCCAAGTTCTTTGAGATGGTGGTCGGATTTGTGTCGAAAGTAGGAGGAAGGCAGAACAAAAAGAGGATGGATCAGGCGACAACAGAAGAACCA

Protein sequence

MVETTGPTGRKLKKGRLPPKRGSVKLKIISKFFEMVVGFVSKVGGRQNKKRMDQATTEEP
Homology
[Close]
BLAST of MS015865 vs. NCBI nr
Match: KGN54189.1 (hypothetical protein Csa_018116 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 5.9e-14
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1  MVETTGPTGRKLKKGRLPPKRGSVKLKIISKFFEMVVGFVSKVGGRQNKKRMDQATTEEP 60
          M +TT PT  K  KGRLPPKRGS+KLKIISK + +V+GF SK+ GRQNKK +DQATTEEP
Sbjct: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60

[Close]
BLAST of MS015865 vs. ExPASy TrEMBL
Match: A0A0A0KZD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G292990 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-14
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1  MVETTGPTGRKLKKGRLPPKRGSVKLKIISKFFEMVVGFVSKVGGRQNKKRMDQATTEEP 60
          M +TT PT  K  KGRLPPKRGS+KLKIISK + +V+GF SK+ GRQNKK +DQATTEEP
Sbjct: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60

The following BLAST results are available for this feature:
BLAST of MS015865 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54189.15.9e-1470.00hypothetical protein Csa_018116 [Cucumis sativus][more]
BLAST of MS015865 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS015865 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZD82.8e-1470.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G292990 PE=4 SV=1[more]
BLAST of MS015865 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015865.1MS015865.1mRNA