MS015864 (gene) Bitter gourd (TR) v1

Overview


Name	MS015864
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	scaffold943_2: 515443 .. 516666 (-)
RNA-Seq Expression	MS015864
Synteny	MS015864

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCACCAAATTGCGCAGTCCCCTGCTAGGTTGGGCTTGAACAATCCCAATTCTCCCTCAATTCAAAACCCTACCCCTCCCAAATTGCCTCCTTCTCAACAATCCCACCACCAAAATCAACCCAATCTCTCTTCTCCAACTCCTTCATCGACCCTTCTCCCTCTCCTTCCTCCGCTCCCCAGAGCTCAAGCTCTTCTCCTGCAAATGGCTACCCTCGCCTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCGTTCCGGGGTTCTCTCCCAACTTTTCTTAATTCCCAAACGCAGTCGTCGCCCTCTACGCCTCTTGATGCTACTCCATCTACTTCGAAAGAAATTCTGTCCCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATCTTCAGGACTCTAAGCAGAAGATTGCCTATGAGATTCGGGCCAAGGATGCTGCTCTTCGTGCTTTTGCTAATAAACTCAAGGATGCTGAGCAGGTTCTTGATGTTCTGTTTGATGATTATGCGGATTATCGACGTCCTCAACGGGTTAAGACAAAGGATGATGTTGAAAATGATTCTTTGTGTTCGACTACGGTTGCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCCCATCGAATTAGCTATACGACTTTCGCGCCACCTGAATTCGGCGCTGGACAAGCTCCGCTACGTGGAGCTCTTCCTCCCGCCCCGCAAGAAGAGCAAATGCGAGCCTCCCAGTTGTATAACTTTGCAGACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACGATTGAGCCAATGATTGAGCCTCCAGCTCCAGTGCCAACGGATGCTAATCCTCTTGCTAATCTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATCACTGTACCATCTGGTTGGAAACCTGGAATGCCAGTGGAATTGCCCAGAGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCATTGGATTCTCTTCCTGTTCCTAGAGTTGATGAGCCACAACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCGATACAAGTTAGGCCTGTACAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGAT

mRNA sequence

ATGCTTCAGCACCAAATTGCGCAGTCCCCTGCTAGGTTGGGCTTGAACAATCCCAATTCTCCCTCAATTCAAAACCCTACCCCTCCCAAATTGCCTCCTTCTCAACAATCCCACCACCAAAATCAACCCAATCTCTCTTCTCCAACTCCTTCATCGACCCTTCTCCCTCTCCTTCCTCCGCTCCCCAGAGCTCAAGCTCTTCTCCTGCAAATGGCTACCCTCGCCTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCGTTCCGGGGTTCTCTCCCAACTTTTCTTAATTCCCAAACGCAGTCGTCGCCCTCTACGCCTCTTGATGCTACTCCATCTACTTCGAAAGAAATTCTGTCCCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATCTTCAGGACTCTAAGCAGAAGATTGCCTATGAGATTCGGGCCAAGGATGCTGCTCTTCGTGCTTTTGCTAATAAACTCAAGGATGCTGAGCAGGTTCTTGATGTTCTGTTTGATGATTATGCGGATTATCGACGTCCTCAACGGGTTAAGACAAAGGATGATGTTGAAAATGATTCTTTGTGTTCGACTACGGTTGCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCCCATCGAATTAGCTATACGACTTTCGCGCCACCTGAATTCGGCGCTGGACAAGCTCCGCTACGTGGAGCTCTTCCTCCCGCCCCGCAAGAAGAGCAAATGCGAGCCTCCCAGTTGTATAACTTTGCAGACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACGATTGAGCCAATGATTGAGCCTCCAGCTCCAGTGCCAACGGATGCTAATCCTCTTGCTAATCTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATCACTGTACCATCTGGTTGGAAACCTGGAATGCCAGTGGAATTGCCCAGAGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCATTGGATTCTCTTCCTGTTCCTAGAGTTGATGAGCCACAACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCGATACAAGTTAGGCCTGTACAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGAT

Coding sequence (CDS)

ATGCTTCAGCACCAAATTGCGCAGTCCCCTGCTAGGTTGGGCTTGAACAATCCCAATTCTCCCTCAATTCAAAACCCTACCCCTCCCAAATTGCCTCCTTCTCAACAATCCCACCACCAAAATCAACCCAATCTCTCTTCTCCAACTCCTTCATCGACCCTTCTCCCTCTCCTTCCTCCGCTCCCCAGAGCTCAAGCTCTTCTCCTGCAAATGGCTACCCTCGCCTCCAAGCTCTTTGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCGTTCCGGGGTTCTCTCCCAACTTTTCTTAATTCCCAAACGCAGTCGTCGCCCTCTACGCCTCTTGATGCTACTCCATCTACTTCGAAAGAAATTCTGTCCCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATCTTCAGGACTCTAAGCAGAAGATTGCCTATGAGATTCGGGCCAAGGATGCTGCTCTTCGTGCTTTTGCTAATAAACTCAAGGATGCTGAGCAGGTTCTTGATGTTCTGTTTGATGATTATGCGGATTATCGACGTCCTCAACGGGTTAAGACAAAGGATGATGTTGAAAATGATTCTTTGTGTTCGACTACGGTTGCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCCCATCGAATTAGCTATACGACTTTCGCGCCACCTGAATTCGGCGCTGGACAAGCTCCGCTACGTGGAGCTCTTCCTCCCGCCCCGCAAGAAGAGCAAATGCGAGCCTCCCAGTTGTATAACTTTGCAGACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACGATTGAGCCAATGATTGAGCCTCCAGCTCCAGTGCCAACGGATGCTAATCCTCTTGCTAATCTGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATCACTGTACCATCTGGTTGGAAACCTGGAATGCCAGTGGAATTGCCCAGAGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCATTGGATTCTCTTCCTGTTCCTAGAGTTGATGAGCCACAACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCGATACAAGTTAGGCCTGTACAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACACTAGTGATGAAGGAAGCTCTGAAGATGATGAT

Protein sequence

MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD

Homology

[Close]

BLAST of MS015864 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 776.9 bits (2005), Expect = 8.4e-221
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300
           APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360
           NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
           QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of MS015864 vs. NCBI nr
Match: XP_038882754.1 (mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida])

HSP 1 Score: 728.0 bits (1878), Expect = 4.5e-206
Identity = 384/408 (94.12%), Postives = 397/408 (97.30%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+RVK KDD EN+SLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKMKDDAENESLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300
           APLRGALPPAPQ+EQMRASQLYNFA+LD+GLPKAVESTEKTIEPMIEPPAPVPTDANPL+
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANPLS 300

Query: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360
           N+A+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP
Sbjct: 301 NMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP 360

Query: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
            QLRPNA PGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 -QLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of MS015864 vs. NCBI nr
Match: XP_008449288.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] >KAA0047287.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 710.3 bits (1832), Expect = 9.6e-201
Identity = 378/408 (92.65%), Postives = 392/408 (96.08%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+RVKT+   EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300
           APLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAPV  DANPL+
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360
           N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
            QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 -QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of MS015864 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 706.8 bits (1823), Expect = 1.1e-199
Identity = 380/409 (92.91%), Postives = 393/409 (96.09%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFLNSQTQS+PSTPLD+TPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLC-STTVASQLKLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDYADY+  +RVKT DDVEN+SLC STTVASQLKLSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCSSTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY+FADLDVGLPK+VESTEKTIEPMIEPPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDE 360
           A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
           P QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 P-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of MS015864 vs. NCBI nr
Match: XP_022963248.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata] >KAG7027281.1 Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 701.4 bits (1809), Expect = 4.5e-198
Identity = 378/409 (92.42%), Postives = 390/409 (95.35%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFLNSQTQS+PSTPLD+TPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDYADY+  +RVKT DDVEN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDE 360
           A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
           P QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 P-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of MS015864 vs. ExPASy Swiss-Prot
Match: Q9LZ00 (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 1.5e-140
Identity = 286/434 (65.90%), Postives = 337/434 (77.65%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL------- 60
           MLQHQI QSPARLGL  P SPS+QNPTP     P    S QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPT 120
                  S+   SS LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLNSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVK-TKDDVEND---SLCSTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DYR+P+R K  +DD +ND   S  STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 KLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA 300
           KL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FADLD+GLPK 
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMP 360
           VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+P
Sbjct: 301 VENMEKKVEALIEPPPPPEA-----MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDS 409
           PPGWKPGDPV LPPL+S+  PR ++ Q +RP+   GLH+PP+ IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

[Close]

BLAST of MS015864 vs. ExPASy Swiss-Prot
Match: Q54D00 (Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium discoideum OX=44689 GN=med4 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.9e-05
Identity = 57/209 (27.27%), Postives = 89/209 (42.58%), Query Frame = 0


Query: 100 LNSQTQSSPSTPLD-----ATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIA 159
           LNSQ       P+D     ATP+   ++++    +       + +L++   +Q    +I 
Sbjct: 44  LNSQQLQQIQLPIDQISNNATPNMVLQLMNHLIDVDKIYQNTLKKLEKHQKIQKEITEIQ 103

Query: 160 YEIRAKDAALRAFANKLKDAEQVLD------------------VLFDDYADYRRPQRVKT 219
            EI  KD  +   A  LKD E  L+                  ++ +   D ++P    +
Sbjct: 104 KEIEEKDKLISTLALNLKDIESFLENELSQDNVNINNGNASDGIVNEVLIDLKQPDDAAS 163

Query: 220 KDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQEE 273
            D++ N          ++   D++SYAH+IS TT AP  FG    APL     PPAPQ+E
Sbjct: 164 MDNIVN---------REVSPEDLISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDE 223

[Close]

BLAST of MS015864 vs. ExPASy TrEMBL
Match: A0A6J1CQ51 (Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=3673 GN=LOC111013711 PE=3 SV=1)

HSP 1 Score: 776.9 bits (2005), Expect = 4.0e-221
Identity = 408/408 (100.00%), Postives = 408/408 (100.00%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300
           APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA
Sbjct: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300

Query: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360
           NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP
Sbjct: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360

Query: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
           QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of MS015864 vs. ExPASy TrEMBL
Match: A0A5A7TZC1 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=MED4 PE=3 SV=1)

HSP 1 Score: 710.3 bits (1832), Expect = 4.7e-201
Identity = 378/408 (92.65%), Postives = 392/408 (96.08%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+RVKT+   EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300
           APLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAPV  DANPL+
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360
           N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
            QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 -QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of MS015864 vs. ExPASy TrEMBL
Match: A0A1S3BLP6 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 710.3 bits (1832), Expect = 4.7e-201
Identity = 378/408 (92.65%), Postives = 392/408 (96.08%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+RVKT+   EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300
           APLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAPV  DANPL+
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPLS 300

Query: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360
           N+AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEP
Sbjct: 301 NMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
            QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 -QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of MS015864 vs. ExPASy TrEMBL
Match: A0A6J1HH73 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111463518 PE=3 SV=1)

HSP 1 Score: 701.4 bits (1809), Expect = 2.2e-198
Identity = 378/409 (92.42%), Postives = 390/409 (95.35%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFLNSQTQS+PSTPLD+TPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAG 240
           LFDDYADY+  +RVKT DDVEN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDE 360
           A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDE
Sbjct: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360

Query: 361 PQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
           P QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 P-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of MS015864 vs. ExPASy TrEMBL
Match: A0A0A0KXB7 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659 GN=MED4 PE=3 SV=1)

HSP 1 Score: 701.0 bits (1808), Expect = 2.8e-198
Identity = 377/408 (92.40%), Postives = 389/408 (95.34%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQTQSSPST LD+TPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYRRPQRVKTKDDVENDSLCSTTVASQLKLSDILSYAHRISYTTFAPPEFGAGQ 240
           LFDDYADY+RP+R KT+ D EN+SLCSTTVASQL+LSDILSYAHRISYTTFAPPEFGAGQ
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCSTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQ 240

Query: 241 APLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPLA 300
           APLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEPPAPV  DANP  
Sbjct: 241 APLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANP-- 300

Query: 301 NLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDEP 360
            LAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEP
Sbjct: 301 -LAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEP 360

Query: 361 QQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 409
            QLRPNALPGLHKPPEPIQVR VQLDILDQDDDSSDYTSDEGSSEDDD
Sbjct: 361 -QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 404

[Close]

BLAST of MS015864 vs. TAIR 10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 500.7 bits (1288), Expect = 1.1e-141
Identity = 286/434 (65.90%), Postives = 337/434 (77.65%), Query Frame = 0


Query: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL------- 60
           MLQHQI QSPARLGL  P SPS+QNPTP     P    S QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPSSTLLPLLPPLPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPT 120
                  S+   SS LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLNSQTQSSPSTPLDATPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYRRPQRVK-TKDDVEND---SLCSTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DYR+P+R K  +DD +ND   S  STTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 KLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKA 300
           KL DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FADLD+GLPK 
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEPPAPVPTDANPLANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMP 360
           VE+ EK +E +IEPP P         +++AI  LLPPNI VPSGWKPGMPVELPRDLP+P
Sbjct: 301 VENMEKKVEALIEPPPPPEA-----MDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLP 360

Query: 361 PPGWKPGDPVPLPPLDSLPVPRVDEPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDS 409
           PPGWKPGDPV LPPL+S+  PR ++ Q +RP+   GLH+PP+ IQVR VQLDIL +DDDS
Sbjct: 361 PPGWKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDIL-EDDDS 420

The following BLAST results are available for this feature:

BLAST of MS015864 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143910.1	8.4e-221	100.00	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]
XP_038882754.1	4.5e-206	94.12	mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]	[more]
XP_008449288.1	9.6e-201	92.65	PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] ...	[more]
XP_023518528.1	1.1e-199	92.91	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]
XP_022963248.1	4.5e-198	92.42	mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata] >KAG7...	[more]

BLAST of MS015864 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ00	1.5e-140	65.90	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]
Q54D00	1.9e-05	27.27	Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium ...	[more]

BLAST of MS015864 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ51	4.0e-221	100.00	Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=...	[more]
A0A5A7TZC1	4.7e-201	92.65	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLP6	4.7e-201	92.65	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1HH73	2.2e-198	92.42	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3...	[more]
A0A0A0KXB7	2.8e-198	92.40	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659...	[more]

BLAST of MS015864 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02850.1	1.1e-141	65.90	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 129..265 e-value: 2.1E-7 score: 30.8
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 50..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..408
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..408

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015864.1	MS015864.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity