MS015835 (gene) Bitter gourd (TR) v1

Overview
NameMS015835
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2
Locationscaffold943_2: 285757 .. 285834 (-)
RNA-Seq ExpressionMS015835
SyntenyMS015835
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAATCATCCACTTTCGGAAGAAATCGAAGAATTTCTCGAGAATCCTACAAGATCCATTCGTTCTTTTTTCTCT

mRNA sequence

ATGAATAATCATCCACTTTCGGAAGAAATCGAAGAATTTCTCGAGAATCCTACAAGATCCATTCGTTCTTTTTTCTCT

Coding sequence (CDS)

ATGAATAATCATCCACTTTCGGAAGAAATCGAAGAATTTCTCGAGAATCCTACAAGATCCATTCGTTCTTTTTTCTCT

Protein sequence

MNNHPLSEEIEEFLENPTRSIRSFFS
Homology
[Close]
BLAST of MS015835 vs. NCBI nr
Match: YP_009752201.1 (Ycf2 protein [Linnaeosicyos amara] >QIT05611.1 Ycf2 protein [Linnaeosicyos amara])

HSP 1 Score: 52.0 bits (123), Expect = 9.1e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNHPL EEIEEFL NPTRSIRSFFS
Sbjct: 461 MNNHPLPEEIEEFLRNPTRSIRSFFS 486

[Close]
BLAST of MS015835 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNH L EEIEEFL NPTRSIRSFFS
Sbjct: 473 MNNHLLPEEIEEFLGNPTRSIRSFFS 498

[Close]
BLAST of MS015835 vs. ExPASy Swiss-Prot
Match: Q7Y667 (Protein Ycf2 OS=Calycanthus floridus var. glaucus OX=212734 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNH L EEIEEFL NPTRSIRSFFS
Sbjct: 467 MNNHLLPEEIEEFLGNPTRSIRSFFS 492

[Close]
BLAST of MS015835 vs. ExPASy Swiss-Prot
Match: A8SEE7 (Protein Ycf2 OS=Ceratophyllum demersum OX=4428 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNH L EEIEEFL NPTRSIRSFFS
Sbjct: 471 MNNHLLPEEIEEFLGNPTRSIRSFFS 496

[Close]
BLAST of MS015835 vs. ExPASy Swiss-Prot
Match: A6MMG6 (Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNH L EEIEEFL NPTRSIRSFFS
Sbjct: 476 MNNHLLPEEIEEFLGNPTRSIRSFFS 501

[Close]
BLAST of MS015835 vs. ExPASy Swiss-Prot
Match: A0ZZ78 (Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNH L EEIEEFL NPTRSIRSFFS
Sbjct: 471 MNNHLLPEEIEEFLGNPTRSIRSFFS 496

[Close]
BLAST of MS015835 vs. ExPASy TrEMBL
Match: A0A6H0ETI0 (Protein Ycf2 OS=Linnaeosicyos amara OX=386243 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNHPL EEIEEFL NPTRSIRSFFS
Sbjct: 461 MNNHPLPEEIEEFLRNPTRSIRSFFS 486

[Close]
BLAST of MS015835 vs. ExPASy TrEMBL
Match: A0A2H4T233 (Protein Ycf2 OS=Cucurbita maxima OX=3661 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.5e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNHPL EEIEEFL NPTRSIRSFFS
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFS 492

[Close]
BLAST of MS015835 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.5e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNHPL EEIEEFL NPTRSIRSFFS
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFS 492

[Close]
BLAST of MS015835 vs. ExPASy TrEMBL
Match: A0A249RYX8 (Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.5e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNHPL EEIEEFL NPTRSIRSFFS
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFS 492

[Close]
BLAST of MS015835 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.5e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNHPL EEIEEFL NPTRSIRSFFS
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFS 492

[Close]
BLAST of MS015835 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 43.9 bits (102), Expect = 2.3e-05
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNH L EE EEFL NPTR+IRSFFS
Sbjct: 473 MNNHLLPEESEEFLGNPTRAIRSFFS 498

[Close]
BLAST of MS015835 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 43.9 bits (102), Expect = 2.3e-05
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1   MNNHPLSEEIEEFLENPTRSIRSFFS 27
           MNNH L EE EEFL NPTR+IRSFFS
Sbjct: 473 MNNHLLPEESEEFLGNPTRAIRSFFS 498

The following BLAST results are available for this feature:
BLAST of MS015835 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009752201.19.1e-0492.31Ycf2 protein [Linnaeosicyos amara] >QIT05611.1 Ycf2 protein [Linnaeosicyos amara... [more]
BLAST of MS015835 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A6MM802.9e-0588.46Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1[more]
Q7Y6672.9e-0588.46Protein Ycf2 OS=Calycanthus floridus var. glaucus OX=212734 GN=ycf2-A PE=3 SV=1[more]
A8SEE72.9e-0588.46Protein Ycf2 OS=Ceratophyllum demersum OX=4428 GN=ycf2-A PE=3 SV=1[more]
A6MMG62.9e-0588.46Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1[more]
A0ZZ782.9e-0588.46Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1[more]
BLAST of MS015835 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0ETI04.4e-0492.31Protein Ycf2 OS=Linnaeosicyos amara OX=386243 GN=ycf2 PE=3 SV=1[more]
A0A2H4T2337.5e-0492.31Protein Ycf2 OS=Cucurbita maxima OX=3661 GN=ycf2 PE=3 SV=1[more]
A0A343F2F17.5e-0492.31Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1[more]
A0A249RYX87.5e-0492.31Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1[more]
A0A6H0ET427.5e-0492.31Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1[more]
BLAST of MS015835 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00860.12.3e-0580.77Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.12.3e-0580.77Chloroplast Ycf2;ATPase, AAA type, core [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015835.1MS015835.1mRNA