MS015802 (gene) Bitter gourd (TR) v1

Overview


Name	MS015802
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold943_2: 60928 .. 61078 (+)
RNA-Seq Expression	MS015802
Synteny	MS015802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAAGTAACGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGATGATCGGGCGATAATGATCCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGAGAGAGAGAGAGATTTGGAACGGCGGAAGTGGAAGA

mRNA sequence

ATGGATCCAAGTAACGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGATGATCGGGCGAGATCCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGAGAGAGAGAGAGATTTGGAACGGCGGAAGTGGAAGA

Coding sequence (CDS)

ATGGATCCAAGTAACGAGTCATCCGAGTCGAATCGCCGGAATGCCGGCGAGATGATCGGGCGAGATCCCGGCGATCAATCCGATCAGAGAAACAGAGCCCCAGAGAGCCAGAGAGAGAGAGAGATTTGGAACGGCGGAAGTGGAAGA

Protein sequence

MDPSNESSESNRRNAGEMIGRDPGDQSDQRNRAPESQREREIWNGGSGR

Homology

[Close]

BLAST of MS015802 vs. NCBI nr
Match: KGN48199.1 (hypothetical protein Csa_003530 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 43/56 (76.79%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  MDPSNESSESNRRNAGEMIG-RDPGDQSDQRNRAPESQ------REREIWNGGSGR 50
          MDPS ESSESNRRNAGE+I   D GDQSDQRNRAPESQ      REREI NGGSGR
Sbjct: 1  MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR 56

[Close]

BLAST of MS015802 vs. ExPASy TrEMBL
Match: A0A0A0KHA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G447080 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-08
Identity = 43/56 (76.79%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  MDPSNESSESNRRNAGEMIG-RDPGDQSDQRNRAPESQ------REREIWNGGSGR 50
          MDPS ESSESNRRNAGE+I   D GDQSDQRNRAPESQ      REREI NGGSGR
Sbjct: 1  MDPSIESSESNRRNAGELIELYDSGDQSDQRNRAPESQEEREREREREISNGGSGR 56

The following BLAST results are available for this feature:

BLAST of MS015802 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48199.1	1.5e-07	76.79	hypothetical protein Csa_003530 [Cucumis sativus]	[more]

BLAST of MS015802 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHA6	7.2e-08	76.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G447080 PE=4 SV=1	[more]

BLAST of MS015802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015802.1	MS015802.1	mRNA