MS015750 (gene) Bitter gourd (TR) v1

Overview
NameMS015750
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold277: 75759 .. 76004 (+)
RNA-Seq ExpressionMS015750
SyntenyMS015750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACGGTGGGCCATCTGTTTCTTTATTGCTCTTTCGCTACTCAGGCTTGGAACTACATAGCTTCTCTTCTAGATCTCGCTCTTTGTTTTCCCAAGAAAGTGGATTATTTCATTGCCGAAGGTTTCGGTGGCTCCGTTCTCAAAGGGAAAGCCTACATTCTGTGGAATTGTGTTGCTAGGGCTCTTCTTTGGCTCCTTTGGAAGGAAAAAAACAATAGATTTTTTGAGAACAAAGAGACCTCGTTT

mRNA sequence

AAAACGGTGGGCCATCTGTTTCTTTATTGCTCTTTCGCTACTCAGGCTTGGAACTACATAGCTTCTCTTCTAGATCTCGCTCTTTGTTTTCCCAAGAAAGTGGATTATTTCATTGCCGAAGGTTTCGGTGGCTCCGTTCTCAAAGGGAAAGCCTACATTCTGTGGAATTGTGTTGCTAGGGCTCTTCTTTGGCTCCTTTGGAAGGAAAAAAACAATAGATTTTTTGAGAACAAAGAGACCTCGTTT

Coding sequence (CDS)

AAAACGGTGGGCCATCTGTTTCTTTATTGCTCTTTCGCTACTCAGGCTTGGAACTACATAGCTTCTCTTCTAGATCTCGCTCTTTGTTTTCCCAAGAAAGTGGATTATTTCATTGCCGAAGGTTTCGGTGGCTCCGTTCTCAAAGGGAAAGCCTACATTCTGTGGAATTGTGTTGCTAGGGCTCTTCTTTGGCTCCTTTGGAAGGAAAAAAACAATAGATTTTTTGAGAACAAAGAGACCTCGTTT

Protein sequence

KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFGGSVLKGKAYILWNCVARALLWLLWKEKNNRFFENKETSF
Homology
BLAST of MS015750 vs. NCBI nr
Match: KAG2691633.1 (hypothetical protein I3760_08G016400 [Carya illinoinensis])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 1   KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIA--EGFGGSVLKGKAYILWNCV 60
           +TV HL L+C FA   WNY  S + LA   P +V   +A   G  G+    +   +W  V
Sbjct: 348 ETVDHLLLHCEFARDTWNYFFSRMGLAWTMPVRVSELLASWRGISGTT---QIVAIWKMV 407

Query: 61  ARALLWLLWKEKNNRFFENKETS 82
              +LW +W E+NNR FE++E S
Sbjct: 408 PICILWCIWSERNNRHFEDRERS 427

BLAST of MS015750 vs. NCBI nr
Match: KAG7965770.1 (hypothetical protein I3843_08G016900 [Carya illinoinensis])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 1   KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIA--EGFGGSVLKGKAYILWNCV 60
           +TV HL L+C FA   WNY  S + LA   P +V   +A   G  G+    +   +W  V
Sbjct: 331 ETVDHLLLHCEFARDTWNYFFSRMGLAWTMPVRVSELLASWRGISGTT---QIVAIWKMV 390

Query: 61  ARALLWLLWKEKNNRFFENKETS 82
              +LW +W E+NNR FE++E S
Sbjct: 391 PICILWCIWSERNNRHFEDRERS 410

BLAST of MS015750 vs. NCBI nr
Match: RVW91431.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 0

Query: 1   KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFG--GSVLKGKAYILWNCV 60
           +++ HLFL+C      W+ + +L  LA   P+ ++  +   F   G+ L+GK   LW   
Sbjct: 314 ESIDHLFLHCPVTIGLWHKLFNLAGLAWVPPRSIEDMLVIAFKGLGNSLRGKT--LWQIA 373

Query: 61  ARALLWLLWKEKNNRFFENKE 80
             ALLW++W+E+NNR FE+KE
Sbjct: 374 CLALLWMVWQERNNRIFEDKE 392

BLAST of MS015750 vs. NCBI nr
Match: OVA02993.1 (Reverse transcriptase zinc-binding domain [Macleaya cordata])

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 28/79 (35.44%), Postives = 41/79 (51.90%), Query Frame = 0

Query: 1   KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFGGSVLKGKAYILWNCVAR 60
           +TV HL L+CSFA + W    +   +   F  +V     EG   S+       LW  +  
Sbjct: 291 ETVDHLLLHCSFANEIWTSFLAEFGIRWAFQNQVKEVFEEGI-SSIFAEHGNYLWRLLPY 350

Query: 61  ALLWLLWKEKNNRFFENKE 80
           A+ W+LWKE+N R+F +KE
Sbjct: 351 AICWVLWKERNERYFNDKE 368

BLAST of MS015750 vs. NCBI nr
Match: RVW20303.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 0

Query: 1    KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFGGSVLKGKAYILWNCVAR 60
            +TV HLFL+CS     W+ +  L  +    P+ V   IA  F G     +  +LW     
Sbjct: 966  ETVDHLFLHCSMTMGLWHRLFQLTKIDWVPPRSVFDMIAINFNGFGSSKRGIVLWQVACI 1025

Query: 61   ALLWLLWKEKNNRFFENK 79
            A+LW++W+E+N R FE+K
Sbjct: 1026 AILWVVWRERNARIFEDK 1043

BLAST of MS015750 vs. ExPASy TrEMBL
Match: A0A2N9J577 (Rab3 GTPase-activating protein catalytic subunit OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59646 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.2e-08
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 5   HLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFGGSVLKGKAYILWNCVARALLW 64
           HL L+CS+A   W++  SL  ++   P ++  F+A   GG   K +A ++W  V   ++W
Sbjct: 470 HLLLHCSYAQALWSFAFSLFGISWVMPAQITDFLASWMGG-FGKSRAALVWGAVPHCVMW 529

Query: 65  LLWKEKNNRFFENKE 80
           LLW+E+N+R FE +E
Sbjct: 530 LLWRERNHRVFEGQE 543

BLAST of MS015750 vs. ExPASy TrEMBL
Match: A0A2N9G662 (zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22920 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 27/81 (33.33%), Postives = 48/81 (59.26%), Query Frame = 0

Query: 1   KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFGGSVLKGKAYILWNCVAR 60
           +++GHLF++C    + W+ + SL  +    P++V   I E  G +  +    I+WN V  
Sbjct: 148 ESIGHLFIHCPVVKELWDAVLSLFGVMWVMPRRVRNLIEEWHGSNHHQS---IIWNAVPH 207

Query: 61  ALLWLLWKEKNNRFFENKETS 82
            L+W +W+E+N+R FE+ ET+
Sbjct: 208 CLMWSVWRERNSRIFEDSETT 225

BLAST of MS015750 vs. ExPASy TrEMBL
Match: A0A2N9IDN0 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50011 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.0e-07
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 1   KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFGGSVLKGKAYILWNCVAR 60
           ++V HL L+C +A + W+ I  L  ++   P +  Y +   +     KG AY++WN +  
Sbjct: 467 ESVNHLMLHCEYAQELWSMIFCLFGISWAMP-QTSYALLHCWR---RKGPAYVVWNAIPS 526

Query: 61  ALLWLLWKEKNNRFFENKE 80
            L+WLLW+E+N R FE+ E
Sbjct: 527 CLMWLLWRERNQRAFEDSE 541

BLAST of MS015750 vs. ExPASy TrEMBL
Match: A0A2N9G2S3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21577 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.0e-07
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 1   KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFGGSVLKGKAYILWNCVAR 60
           ++V HL L+C +A + W+ I  L  ++   P +  Y +   +     KG AY++WN +  
Sbjct: 486 ESVNHLMLHCEYAQELWSMIFCLFGISWAMP-QTSYALLHCWR---RKGPAYVVWNAIPS 545

Query: 61  ALLWLLWKEKNNRFFENKE 80
            L+WLLW+E+N R FE+ E
Sbjct: 546 CLMWLLWRERNQRAFEDSE 560

BLAST of MS015750 vs. ExPASy TrEMBL
Match: A0A438I409 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1286 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 0

Query: 1   KTVGHLFLYCSFATQAWNYIASLLDLALCFPKKVDYFIAEGFG--GSVLKGKAYILWNCV 60
           +++ HLFL+C      W+ + +L  LA   P+ ++  +   F   G+ L+GK   LW   
Sbjct: 314 ESIDHLFLHCPVTIGLWHKLFNLAGLAWVPPRSIEDMLVIAFKGLGNSLRGKT--LWQIA 373

Query: 61  ARALLWLLWKEKNNRFFENKE 80
             ALLW++W+E+NNR FE+KE
Sbjct: 374 CLALLWMVWQERNNRIFEDKE 392

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG2691633.11.5e-0738.55hypothetical protein I3760_08G016400 [Carya illinoinensis][more]
KAG7965770.11.5e-0738.55hypothetical protein I3843_08G016900 [Carya illinoinensis][more]
RVW91431.11.6e-0637.04putative ribonuclease H protein [Vitis vinifera][more]
OVA02993.16.1e-0635.44Reverse transcriptase zinc-binding domain [Macleaya cordata][more]
RVW20303.16.1e-0635.90Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9J5779.2e-0837.33Rab3 GTPase-activating protein catalytic subunit OS=Fagus sylvatica OX=28930 GN=... [more]
A0A2N9G6621.6e-0733.33zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22920 P... [more]
A0A2N9IDN06.0e-0735.44Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9G2S36.0e-0735.44Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A438I4097.8e-0737.04Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1286 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015750.1MS015750.1mRNA