MS015695 (gene) Bitter gourd (TR) v1

Overview
NameMS015695
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionABC transporter B family member 9-like
Locationscaffold983: 356628 .. 356780 (-)
RNA-Seq ExpressionMS015695
SyntenyMS015695
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTTCGTTTGCAGACAATTTCGACGTCGTTTTGATGATCGTCGGAACGGTGGCCGCCGTCGACAACGGGCTGTCGCGACCGGCGGTGATTCTCATTTTGGAGAGCTTGGTTAATTCCTTCGCCTTCTCCGATAACGATTCCGTCATGAAG

mRNA sequence

CTTTTTTCGTTTGCAGACAATTTCGACGTCGTTTTGATGATCGTCGGAACGGTGGCCGCCGTCGACAACGGGCTGTCGCGACCGGCGGTGATTCTCATTTTGGAGAGCTTGGTTAATTCCTTCGCCTTCTCCGATAACGATTCCGTCATGAAG

Coding sequence (CDS)

CTTTTTTCGTTTGCAGACAATTTCGACGTCGTTTTGATGATCGTCGGAACGGTGGCCGCCGTCGACAACGGGCTGTCGCGACCGGCGGTGATTCTCATTTTGGAGAGCTTGGTTAATTCCTTCGCCTTCTCCGATAACGATTCCGTCATGAAG

Protein sequence

LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK
Homology
[Close]
BLAST of MS015695 vs. NCBI nr
Match: XP_022140171.1 (ABC transporter B family member 9-like [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 9.7e-10
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 2   FSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK 52
           F  ADNFDVVLMIVGTVAAV NGLS+PAVILI   LVNSFAFS N+SV K
Sbjct: 82  FPVADNFDVVLMIVGTVAAVGNGLSQPAVILIFGELVNSFAFSVNNSVTK 131

[Close]
BLAST of MS015695 vs. NCBI nr
Match: XP_022925776.1 (ABC transporter B family member 9-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVM 51
          LFSFAD FD VLMIVGTV+AV NGLS+P V LI   ++NSF  +D   V+
Sbjct: 24 LFSFADRFDTVLMIVGTVSAVANGLSQPLVTLIFNKMINSFGSADQSDVV 73

[Close]
BLAST of MS015695 vs. NCBI nr
Match: KAG7034680.1 (ABC transporter B family member 9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVM 51
          LFSFAD FD VLMIVGTV+AV NGLS+P V LI   ++NSF  +D   V+
Sbjct: 24 LFSFADRFDTVLMIVGTVSAVANGLSQPLVTLIFNKMINSFGSADQSDVV 73

[Close]
BLAST of MS015695 vs. NCBI nr
Match: CAD5334138.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 26/51 (50.98%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK 52
          LF+FAD +D+VLM++GT++A+ NGL++P + +++  L+N F FSDND V K
Sbjct: 23 LFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFSDNDHVFK 73

[Close]
BLAST of MS015695 vs. NCBI nr
Match: XP_021598602.1 (ABC transporter B family member 9 [Manihot esculenta] >OAY25055.1 hypothetical protein MANES_17G064200v8 [Manihot esculenta])

HSP 1 Score: 60.5 bits (145), Expect = 5.0e-06
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVM 51
          LFSFAD  DVVLMIVGTVAA  NGLS+P + LI   L+NSF  +D  SV+
Sbjct: 31 LFSFADKIDVVLMIVGTVAATANGLSQPLMALIFGQLINSFGSADQSSVV 80

[Close]
BLAST of MS015695 vs. ExPASy Swiss-Prot
Match: Q9FHF1 (ABC transporter B family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCB7 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-08
Identity = 25/51 (49.02%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK 52
          LF+FAD +D+VLM++GT++A+ NGL++P + +++  L+N F FSD+D V K
Sbjct: 23 LFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFSDHDHVFK 73

[Close]
BLAST of MS015695 vs. ExPASy Swiss-Prot
Match: Q9M0M2 (ABC transporter B family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCB9 PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-07
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK 52
          LFSFAD  DVVLM VGT+AA  NGL++P + LI   L+N+F  +D D +++
Sbjct: 21 LFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINAFGTTDPDHMVR 71

[Close]
BLAST of MS015695 vs. ExPASy Swiss-Prot
Match: Q9M1Q9 (ABC transporter B family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCB21 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-05
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 1   LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDS 49
           LF+FAD+FD++LMI+GT+ AV NGL  P + ++   +++ F  + N S
Sbjct: 68  LFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSS 115

[Close]
BLAST of MS015695 vs. ExPASy Swiss-Prot
Match: Q54BT3 (ABC transporter B family member 2 OS=Dictyostelium discoideum OX=44689 GN=abcB2 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 7.5e-05
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 1   LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFA 43
           LF FA  FD++LMI+GT+ A+ NG+S PA+ ++   L+NSF+
Sbjct: 128 LFRFAKPFDILLMIIGTIGALANGVSMPAISIVFGRLMNSFS 169

[Close]
BLAST of MS015695 vs. ExPASy Swiss-Prot
Match: Q9FWX7 (ABC transporter B family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.7e-04
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDND 48
          LF+FAD+ DV+LMI G++ A+ NG+S P + L+   L++SF  + N+
Sbjct: 46 LFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNN 92

[Close]
BLAST of MS015695 vs. ExPASy TrEMBL
Match: A0A6J1CF26 (ABC transporter B family member 9-like OS=Momordica charantia OX=3673 GN=LOC111010904 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 2   FSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK 52
           F  ADNFDVVLMIVGTVAAV NGLS+PAVILI   LVNSFAFS N+SV K
Sbjct: 82  FPVADNFDVVLMIVGTVAAVGNGLSQPAVILIFGELVNSFAFSVNNSVTK 131

[Close]
BLAST of MS015695 vs. ExPASy TrEMBL
Match: A0A6J1ED43 (ABC transporter B family member 9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433083 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVM 51
          LFSFAD FD VLMIVGTV+AV NGLS+P V LI   ++NSF  +D   V+
Sbjct: 24 LFSFADRFDTVLMIVGTVSAVANGLSQPLVTLIFNKMINSFGSADQSDVV 73

[Close]
BLAST of MS015695 vs. ExPASy TrEMBL
Match: A0A7G2FKL1 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS21458 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 26/51 (50.98%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK 52
          LF+FAD +D+VLM++GT++A+ NGL++P + +++  L+N F FSDND V K
Sbjct: 23 LFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFSDNDHVFK 73

[Close]
BLAST of MS015695 vs. ExPASy TrEMBL
Match: A0A2C9U5R7 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G064200 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVM 51
          LFSFAD  DVVLMIVGTVAA  NGLS+P + LI   L+NSF  +D  SV+
Sbjct: 31 LFSFADKIDVVLMIVGTVAATANGLSQPLMALIFGQLINSFGSADQSSVV 80

[Close]
BLAST of MS015695 vs. ExPASy TrEMBL
Match: A0A0V0IZI8 (Putative ABC transporter B family member 9-like (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-06
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVM 51
          LFSFAD FDV LMI+GT+ A+ NGL++P + LI   LVNSF  S++D V+
Sbjct: 26 LFSFADKFDVALMIIGTIGAIGNGLTQPLMTLIFGQLVNSFGSSNSDEVV 75

[Close]
BLAST of MS015695 vs. TAIR 10
Match: AT5G46540.1 (P-glycoprotein 7 )

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09
Identity = 25/51 (49.02%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK 52
          LF+FAD +D+VLM++GT++A+ NGL++P + +++  L+N F FSD+D V K
Sbjct: 23 LFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFSDHDHVFK 73

[Close]
BLAST of MS015695 vs. TAIR 10
Match: AT4G18050.1 (P-glycoprotein 9 )

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-08
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDSVMK 52
          LFSFAD  DVVLM VGT+AA  NGL++P + LI   L+N+F  +D D +++
Sbjct: 21 LFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINAFGTTDPDHMVR 71

[Close]
BLAST of MS015695 vs. TAIR 10
Match: AT3G62150.1 (P-glycoprotein 21 )

HSP 1 Score: 48.1 bits (113), Expect = 2.4e-06
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 1   LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDNDS 49
           LF+FAD+FD++LMI+GT+ AV NGL  P + ++   +++ F  + N S
Sbjct: 68  LFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSS 115

[Close]
BLAST of MS015695 vs. TAIR 10
Match: AT1G02520.1 (P-glycoprotein 11 )

HSP 1 Score: 45.8 bits (107), Expect = 1.2e-05
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDND 48
          LF+FAD+ DV+LMI G++ A+ NG+S P + L+   L++SF  + N+
Sbjct: 46 LFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNN 92

[Close]
BLAST of MS015695 vs. TAIR 10
Match: AT1G02530.1 (P-glycoprotein 12 )

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-05
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 1  LFSFADNFDVVLMIVGTVAAVDNGLSRPAVILILESLVNSFAFSDND 48
          LF+FAD+FDV LMI G++ A+ NG+  P + L+   L++SF  + N+
Sbjct: 33 LFAFADSFDVFLMICGSLGAIGNGVCLPLMTLLFGDLIDSFGKNQNN 79

The following BLAST results are available for this feature:
BLAST of MS015695 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140171.19.7e-1080.00ABC transporter B family member 9-like [Momordica charantia][more]
XP_022925776.12.9e-0662.00ABC transporter B family member 9-like isoform X1 [Cucurbita moschata][more]
KAG7034680.12.9e-0662.00ABC transporter B family member 9, partial [Cucurbita argyrosperma subsp. argyro... [more]
CAD5334138.13.8e-0650.98unnamed protein product [Arabidopsis thaliana][more]
XP_021598602.15.0e-0664.00ABC transporter B family member 9 [Manihot esculenta] >OAY25055.1 hypothetical p... [more]
BLAST of MS015695 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FHF11.9e-0849.02ABC transporter B family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCB7 PE=3 ... [more]
Q9M0M24.7e-0752.94ABC transporter B family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCB9 PE=3 ... [more]
Q9M1Q93.4e-0543.75ABC transporter B family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCB21 PE=... [more]
Q54BT37.5e-0550.00ABC transporter B family member 2 OS=Dictyostelium discoideum OX=44689 GN=abcB2 ... [more]
Q9FWX71.7e-0444.68ABC transporter B family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCB11 PE=... [more]
BLAST of MS015695 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CF264.7e-1080.00ABC transporter B family member 9-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1ED431.4e-0662.00ABC transporter B family member 9-like isoform X1 OS=Cucurbita moschata OX=3662 ... [more]
A0A7G2FKL11.9e-0650.98(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC... [more]
A0A2C9U5R72.4e-0664.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G064200 PE=4 SV=... [more]
A0A0V0IZI83.2e-0658.00Putative ABC transporter B family member 9-like (Fragment) OS=Solanum chacoense ... [more]
BLAST of MS015695 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G46540.11.4e-0949.02P-glycoprotein 7 [more]
AT4G18050.13.3e-0852.94P-glycoprotein 9 [more]
AT3G62150.12.4e-0643.75P-glycoprotein 21 [more]
AT1G02520.11.2e-0544.68P-glycoprotein 11 [more]
AT1G02530.11.5e-0544.68P-glycoprotein 12 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036640ABC transporter type 1, transmembrane domain superfamilyGENE3D1.20.1560.10ABC transporter type 1, transmembrane domaincoord: 1..50
e-value: 7.3E-8
score: 32.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015695.1MS015695.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding