MS015650 (gene) Bitter gourd (TR) v1

Overview
NameMS015650
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S13
Locationscaffold983: 9024 .. 9515 (+)
RNA-Seq ExpressionMS015650
SyntenyMS015650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCGTGGTCTTCAAATCAAGTGTGTTCGAGTTGGAGGAGTTGAAATACCCAACAACAAGCGAATTCAATACTCCCTTCAATATATACATGGAATTGGTCGCAACAATGCTAAGAAAATACTGTATGATCTAAGCCTGGAGAACAAGATAACCAAGGACTTATCTGAGGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTTCATGATTGAAGGAGATCTGGTCTCTCTCTTTCTCTGTCTGTGTATGTTGAGAGAAAGTGTAGCTCAAAACTACAAATGTTGGGTCTCTCTGTGCTTACAAGTTTGATTGTTTGTTTTGCAGAGGCGGTTCAATGCACTCGCCATAAGGAGATTAAAAGAGATTCAGTGCTATAGAGGGATTCGACACATTCAGGGATTGCCTTGCAGAGGGCAGCGAACCAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTCCAGGGAAGAAGAAGGCTCCTCGC

mRNA sequence

GTTCGTGGTCTTCAAATCAAGTGTGTTCGAGTTGGAGGAGTTGAAATACCCAACAACAAGCGAATTCAATACTCCCTTCAATATATACATGGAATTGGTCGCAACAATGCTAAGAAAATACTGTATGATCTAAGCCTGGAGAACAAGATAACCAAGGACTTATCTGAGGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTTCATGATTGAAGGAGATCTGAGGCGGTTCAATGCACTCGCCATAAGGAGATTAAAAGAGATTCAGTGCTATAGAGGGATTCGACACATTCAGGGATTGCCTTGCAGAGGGCAGCGAACCAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTCCAGGGAAGAAGAAGGCTCCTCGC

Coding sequence (CDS)

GTTCGTGGTCTTCAAATCAAGTGTGTTCGAGTTGGAGGAGTTGAAATACCCAACAACAAGCGAATTCAATACTCCCTTCAATATATACATGGAATTGGTCGCAACAATGCTAAGAAAATACTGTATGATCTAAGCCTGGAGAACAAGATAACCAAGGACTTATCTGAGGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTTCATGATTGAAGGAGATCTGAGGCGGTTCAATGCACTCGCCATAAGGAGATTAAAAGAGATTCAGTGCTATAGAGGGATTCGACACATTCAGGGATTGCCTTGCAGAGGGCAGCGAACCAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTCCAGGGAAGAAGAAGGCTCCTCGC

Protein sequence

VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
Homology
[Close]
BLAST of MS015650 vs. NCBI nr
Match: XP_022141626.1 (30S ribosomal protein S13, chloroplastic-like [Momordica charantia])

HSP 1 Score: 258.8 bits (660), Expect = 2.4e-65
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI
Sbjct: 38  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 97

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV
Sbjct: 98  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 157

Query: 121 AIPGKKKAPR 131
           AIPGKKKAPR
Sbjct: 158 AIPGKKKAPR 167

[Close]
BLAST of MS015650 vs. NCBI nr
Match: XP_038876079.1 (30S ribosomal protein S13, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 8.7e-63
Identity = 124/130 (95.38%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL++ENKITKDLSEEELI
Sbjct: 38  VRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELI 97

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           SIRDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV
Sbjct: 98  SIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 157

Query: 121 AIPGKKKAPR 131
           AI GKKKAPR
Sbjct: 158 AIAGKKKAPR 167

[Close]
BLAST of MS015650 vs. NCBI nr
Match: XP_004140327.1 (30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothetical protein Csa_018654 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 122/130 (93.85%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKR+QYSLQY+HGIGRNNAKKIL+DL++ENKITKDLSEEELI
Sbjct: 38  VRGLQIKCVRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELI 97

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           SIRDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+
Sbjct: 98  SIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKI 157

Query: 121 AIPGKKKAPR 131
           AI GKKKAPR
Sbjct: 158 AIAGKKKAPR 167

[Close]
BLAST of MS015650 vs. NCBI nr
Match: KAA0047502.1 (30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 3.3e-62
Identity = 123/130 (94.62%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL 
Sbjct: 77  VRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELK 136

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           S+RDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV
Sbjct: 137 SVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 196

Query: 121 AIPGKKKAPR 131
           AI GKKKAPR
Sbjct: 197 AIAGKKKAPR 206

[Close]
BLAST of MS015650 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 3.3e-62
Identity = 123/130 (94.62%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL 
Sbjct: 38  VRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELK 97

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           S+RDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV
Sbjct: 98  SVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 157

Query: 121 AIPGKKKAPR 131
           AI GKKKAPR
Sbjct: 158 AIAGKKKAPR 167

[Close]
BLAST of MS015650 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.3e-55
Identity = 103/129 (79.84%), Postives = 117/129 (90.70%), Query Frame = 0 

Query: 2   RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELIS 61
           + L I+C RVGGVEIP NKRI+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI 
Sbjct: 41  QSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELII 100

Query: 62  IRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVA 121
           +RDEVSK+MIEGDLRRFNALAI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+A
Sbjct: 101 LRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIA 160

Query: 122 IPGKKKAPR 131
           I GKKK  +
Sbjct: 161 IAGKKKVSK 169

[Close]
BLAST of MS015650 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 214.2 bits (544), Expect = 9.0e-55
Identity = 103/128 (80.47%), Postives = 119/128 (92.97%), Query Frame = 0 

Query: 3   GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISI 62
           GL IKCVRVG VEIPNNKR++YSLQYIHGIGR+ A++IL DL+LENK+TK+LSE+EL+ +
Sbjct: 42  GLSIKCVRVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQV 101

Query: 63  RDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVA 122
           RDEV+K+MIEGDLRRFNA+AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V 
Sbjct: 102 RDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQ 161

Query: 123 IPGKKKAP 130
           I GKKK P
Sbjct: 162 IAGKKKPP 169

[Close]
BLAST of MS015650 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-30
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 0 

Query: 3   GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISI 62
           GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  L + NK+ +DL+ +ELI +
Sbjct: 26  GLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDL 85

Query: 63  RDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI 122
           R+EV +     +LRR     I+RL E+ CYRG RH  GLPCRGQRT  N RT KGK VAI
Sbjct: 86  REEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAI 145

Query: 123 PGKKKAPR 131
            GKKKAPR
Sbjct: 146 AGKKKAPR 153

[Close]
BLAST of MS015650 vs. ExPASy Swiss-Prot
Match: Q8LPW2 (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-27
Identity = 61/122 (50.00%), Postives = 87/122 (71.31%), Query Frame = 0 

Query: 1   VRGLQIKCVRVG---GVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEE 60
           V G++++ + +G   G EIP+NKR+ Y+LQ +HGIGR+ A+ I+ +L +ENK  KDLS+ 
Sbjct: 21  VHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKR 80

Query: 61  ELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKG 120
           EL SIR+ +SK++I  DL++     + RL  IQCYRGIRH+  LPCRGQRT  N RT + 
Sbjct: 81  ELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRS 140

[Close]
BLAST of MS015650 vs. ExPASy Swiss-Prot
Match: A0PXX2 (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) OX=386415 GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.6e-27
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 0 

Query: 10  RVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLE-NKITKDLSEEELISIRDEVSK 69
           R+ G+++P  KR++  L YI+GIG N +++IL +  +  +   KDLSEEE+ +IRD + K
Sbjct: 3   RIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGK 62

Query: 70  -FMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKK 127
            F+IEGDLRR  AL I+RL EI CYRGIRH +GLP RGQ+TK N RT KG K AI GKK
Sbjct: 63  NFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121

[Close]
BLAST of MS015650 vs. ExPASy TrEMBL
Match: A0A6J1CJS2 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011934 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI
Sbjct: 38  VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 97

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV
Sbjct: 98  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 157

Query: 121 AIPGKKKAPR 131
           AIPGKKKAPR
Sbjct: 158 AIPGKKKAPR 167

[Close]
BLAST of MS015650 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.2e-63
Identity = 122/130 (93.85%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKR+QYSLQY+HGIGRNNAKKIL+DL++ENKITKDLSEEELI
Sbjct: 38  VRGLQIKCVRVGGVEIPNNKRVQYSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELI 97

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           SIRDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+
Sbjct: 98  SIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKI 157

Query: 121 AIPGKKKAPR 131
           AI GKKKAPR
Sbjct: 158 AIAGKKKAPR 167

[Close]
BLAST of MS015650 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 123/130 (94.62%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL 
Sbjct: 77  VRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELK 136

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           S+RDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV
Sbjct: 137 SVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 196

Query: 121 AIPGKKKAPR 131
           AI GKKKAPR
Sbjct: 197 AIAGKKKAPR 206

[Close]
BLAST of MS015650 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 123/130 (94.62%), Postives = 128/130 (98.46%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           VRGLQIKCVRVGGVEIPNNKR+QYSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL 
Sbjct: 38  VRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELK 97

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           S+RDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV
Sbjct: 98  SVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 157

Query: 121 AIPGKKKAPR 131
           AI GKKKAPR
Sbjct: 158 AIAGKKKAPR 167

[Close]
BLAST of MS015650 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.9e-61
Identity = 121/130 (93.08%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 1   VRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELI 60
           V GLQIKCVRVGGVEIPNNKR+ YSLQYIHGIGRNNAKKIL+DL++ENKITKDL+EEELI
Sbjct: 38  VPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELI 97

Query: 61  SIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 120
           SIRDEVSK+MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV
Sbjct: 98  SIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKV 157

Query: 121 AIPGKKKAPR 131
           AI GKKKAPR
Sbjct: 158 AIAGKKKAPR 167

[Close]
BLAST of MS015650 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 214.9 bits (546), Expect = 3.8e-56
Identity = 103/129 (79.84%), Postives = 117/129 (90.70%), Query Frame = 0 

Query: 2   RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELIS 61
           + L I+C RVGGVEIP NKRI+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI 
Sbjct: 41  QSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELII 100

Query: 62  IRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVA 121
           +RDEVSK+MIEGDLRRFNALAI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+A
Sbjct: 101 LRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIA 160

Query: 122 IPGKKKAPR 131
           I GKKK  +
Sbjct: 161 IAGKKKVSK 169

[Close]
BLAST of MS015650 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-31
Identity = 66/128 (51.56%), Postives = 89/128 (69.53%), Query Frame = 0 

Query: 3   GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISI 62
           GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  L + NK+ +DL+ +ELI +
Sbjct: 26  GLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDL 85

Query: 63  RDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI 122
           R+EV +     +LRR     I+RL E+ CYRG RH  GLPCRGQRT  N RT KGK VAI
Sbjct: 86  REEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAI 145

Query: 123 PGKKKAPR 131
            GKKKAPR
Sbjct: 146 AGKKKAPR 153

[Close]
BLAST of MS015650 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-26
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 2   RGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELIS 61
           + L I+C RVGGVEIP NKRI+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI 
Sbjct: 41  QSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELII 100

Query: 62  IRDEVSKFMIEGDL 76
           +RDEVSK+MIEGDL
Sbjct: 101 LRDEVSKYMIEGDL 114

The following BLAST results are available for this feature:
BLAST of MS015650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022141626.12.4e-65100.0030S ribosomal protein S13, chloroplastic-like [Momordica charantia][more]
XP_038876079.18.7e-6395.3830S ribosomal protein S13, chloroplastic-like [Benincasa hispida][more]
XP_004140327.11.5e-6293.8530S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothe... [more]
KAA0047502.13.3e-6294.6230S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal p... [more]
XP_008465819.13.3e-6294.62PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo][more]
BLAST of MS015650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427325.3e-5579.8430S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P821639.0e-5580.4730S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P... [more]
Q9CA191.6e-3051.56Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
Q8LPW22.1e-2750.00Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP... [more]
A0PXX23.6e-2755.4630S ribosomal protein S13 OS=Clostridium novyi (strain NT) OX=386415 GN=rpsM PE=... [more]
BLAST of MS015650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CJS21.2e-65100.0030S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=... [more]
A0A0A0KN287.2e-6393.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1[more]
A0A5A7TVL61.6e-6294.6230S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CPR41.6e-6294.6230S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408... [more]
A0A6J1JXU53.9e-6193.0830S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
BLAST of MS015650 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G14320.13.8e-5679.84Ribosomal protein S13/S18 family [more]
AT1G77750.11.1e-3151.56Ribosomal protein S13/S18 family [more]
AT5G14320.23.1e-2674.32Ribosomal protein S13/S18 family [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019980Ribosomal protein S13, bacterial-typeTIGRFAMTIGR03631TIGR03631coord: 10..119
e-value: 4.0E-40
score: 134.8
IPR019980Ribosomal protein S13, bacterial-typePANTHERPTHR10871:SF137S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIALcoord: 2..128
NoneNo IPR availableGENE3D1.10.8.50coord: 9..77
e-value: 4.1E-25
score: 89.7
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 2..128
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 68..114
e-value: 1.8E-18
score: 67.1
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 4..130
e-value: 6.7E-48
score: 159.9
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 8..124
score: 23.911079
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 11..117
score: 34.616734
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 78..130
e-value: 2.8E-25
score: 89.7
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 93..106
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 9..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015650.1MS015650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome