MS015641 (gene) Bitter gourd (TR) v1

Overview


Name	MS015641
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ultraviolet-B receptor UVR8 isoform X1
Location	scaffold942: 88683 .. 89959 (+)
RNA-Seq Expression	MS015641
Synteny	MS015641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACGATCCAATTATTTTATTGTTATTGAACCAGGTGGTGCTATATTCACTTGGGGTTGGGGAGGTTCTCACGGAACTTTCTCTGTGGATGGTCATTCGTCTGGGGGTCAGCTGGTACGTTGCTTCTCTTGCTTTTCTATTCTTCTTACTGCTGGATTTGTTAAAAATCGGTCGACATTTGAATGTGATTACTTGAAATCTAGAGTCTTTTTTTTTTTTTAAACCTGCATTTGCATTATGATTTCTTAGAAAATAAGTTCTCATTTGAAGCGATCTGATTACATATGAAAATTCTAAAGACAGGCACAAGAGCACTGGCATTGCTGCATCTCTGCACTGAACATATTTATACGTTATATGGTTAAACAACTACTTCTCTAGTTATTTAGTTCTACTGGATAGAATTCTTTTCTTAAGGCTTACTGTTTAACTGCTGGACTTCTAATAGTTTAGGCCCCATTTGATAACCATTTTGCTTTTAGTTTTCTGTTTTTGAAAAAAATTATGCTTGTTTTCACCCTTCTTAAAACTACATAGAAAAAAATAAGTTTTTTTGAAAAAATATTTGTTTTTTAGTTTTAAAAATTTGTCTTAGATTTTGCCAACAATTTTAGAAAATAGATGCAAGACAAATAAATAGGTGAAAATAATGTTTTACATGTTTAATTTTCAAAAACAGAAAACCAAAATCTAAATAGTTATGAATTTTCAACTGGGCTCTTGTATCTTGAGCTAATGTTTCCTGTTTTAGATCACTCCTACGTAAGGCCCATTTGGTTGCTATTTCAGTATTTTGTATCCAAAATTTCAATTGATAAAGGATGAATTTGTTACTACTACTGTTTTAAACTTCATTGTCTACTTTTTTTTAAAAAAGTTAGAGCAATTTTCAAAAGCATGGTTTTTGGTGTCTCAAATATGATTGAGATGCCAAAGGGTTTCGTTTCGAAAAGTCTGAGAATAAAACATAGAGATTATCAGTAAACGATCTCATTTTTTAAGAACAAAATTATTATAAAGTGAGGTCTAAAGTTGTTAGTCATACCCCATATTTCGAACTCAGCGGTTTCCATAAATTCCTACAACAGTTCGTCTTGGGCTAGATTTACAACTGTCCTCAAACAGCTTGTGTAGCCATAAGGGTTCTGTTTGAATTGCAGGGACACGGCAGTGATGTTGACTATGTGAAACCTATGATGGTCGACATTGGGGAGAATGTGAAGTCAGTACAAGTCTCCTGTGGGTTCAACCACACCGGTGCCATACTCGAGTACAAG

mRNA sequence

CAACGATCCAATTATTTTATTGTTATTGAACCAGGTGGTGCTATATTCACTTGGGGTTGGGGAGGTTCTCACGGAACTTTCTCTGTGGATGGTCATTCGTCTGGGGGTCAGCTGGGACACGGCAGTGATGTTGACTATGTGAAACCTATGATGGTCGACATTGGGGAGAATGTGAAGTCAGTACAAGTCTCCTGTGGGTTCAACCACACCGGTGCCATACTCGAGTACAAG

Coding sequence (CDS)

CAACGATCCAATTATTTTATTGTTATTGAACCAGGTGGTGCTATATTCACTTGGGGTTGGGGAGGTTCTCACGGAACTTTCTCTGTGGATGGTCATTCGTCTGGGGGTCAGCTGGGACACGGCAGTGATGTTGACTATGTGAAACCTATGATGGTCGACATTGGGGAGAATGTGAAGTCAGTACAAGTCTCCTGTGGGTTCAACCACACCGGTGCCATACTCGAGTACAAG

Protein sequence

QRSNYFIVIEPGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTGAILEYK

Homology

[Close]

BLAST of MS015641 vs. NCBI nr
Match: XP_022154913.1 (ultraviolet-B receptor UVR8 isoform X2 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG
Sbjct: 332 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 391

Query: 72  AILEYK 78
           AILEYK
Sbjct: 392 AILEYK 397

[Close]

BLAST of MS015641 vs. NCBI nr
Match: XP_022154912.1 (ultraviolet-B receptor UVR8 isoform X1 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG
Sbjct: 352 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 411

Query: 72  AILEYK 78
           AILEYK
Sbjct: 412 AILEYK 417

[Close]

BLAST of MS015641 vs. NCBI nr
Match: XP_038883567.1 (ultraviolet-B receptor UVR8 isoform X1 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 2.8e-29
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKP M+D+GENVK+VQVSCGFNHTG
Sbjct: 353 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTG 412

Query: 72  AILEYK 78
           AILEYK
Sbjct: 413 AILEYK 418

[Close]

BLAST of MS015641 vs. NCBI nr
Match: XP_038883571.1 (ultraviolet-B receptor UVR8 isoform X5 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 2.8e-29
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKP M+D+GENVK+VQVSCGFNHTG
Sbjct: 278 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTG 337

Query: 72  AILEYK 78
           AILEYK
Sbjct: 338 AILEYK 343

[Close]

BLAST of MS015641 vs. NCBI nr
Match: XP_022966331.1 (ultraviolet-B receptor UVR8 isoform X1 [Cucurbita maxima])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKP M+D+GENVK+VQVSCGFNHTG
Sbjct: 352 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTG 411

Query: 72  AILEY 77
           AILEY
Sbjct: 412 AILEY 416

[Close]

BLAST of MS015641 vs. ExPASy Swiss-Prot
Match: Q9FN03 (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.3e-04
Identity = 22/63 (34.92%), Postives = 34/63 (53.97%), Query Frame = 0


Query: 13  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTGA 72
           G ++ WGW            +  GQ+G G+++D   P+ V   ++ K VQVSCG+ HT A
Sbjct: 295 GKLYGWGW------------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLA 345

Query: 73  ILE 76
           + E
Sbjct: 355 VTE 345

[Close]

BLAST of MS015641 vs. ExPASy TrEMBL
Match: A0A6J1DLK8 (ultraviolet-B receptor UVR8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022061 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.6e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG
Sbjct: 332 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 391

Query: 72  AILEYK 78
           AILEYK
Sbjct: 392 AILEYK 397

[Close]

BLAST of MS015641 vs. ExPASy TrEMBL
Match: A0A6J1DMZ3 (ultraviolet-B receptor UVR8 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022061 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.6e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG
Sbjct: 352 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 411

Query: 72  AILEYK 78
           AILEYK
Sbjct: 412 AILEYK 417

[Close]

BLAST of MS015641 vs. ExPASy TrEMBL
Match: A0A6J1HRS2 (PH, RCC1 and FYVE domains-containing protein 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.2e-29
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKP M+D+GENVK+VQVSCGFNHTG
Sbjct: 335 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTG 394

Query: 72  AILEY 77
           AILEY
Sbjct: 395 AILEY 399

[Close]

BLAST of MS015641 vs. ExPASy TrEMBL
Match: A0A6J1HMP4 (ultraviolet-B receptor UVR8 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.2e-29
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKP M+D+GENVK+VQVSCGFNHTG
Sbjct: 351 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTG 410

Query: 72  AILEY 77
           AILEY
Sbjct: 411 AILEY 415

[Close]

BLAST of MS015641 vs. ExPASy TrEMBL
Match: A0A6J1HP08 (ultraviolet-B receptor UVR8 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466019 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.2e-29
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 12  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTG 71
           GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKP M+D+GENVK+VQVSCGFNHTG
Sbjct: 352 GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTG 411

Query: 72  AILEY 77
           AILEY
Sbjct: 412 AILEY 416

[Close]

BLAST of MS015641 vs. TAIR 10
Match: AT5G08710.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.2e-27
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 15  IFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTGAIL 74
           +FTWGWGGSHGTFSVDGHSSGGQLGHGSDVDY +P MVD+G+NV++V +SCGFNHT A+L
Sbjct: 372 VFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVL 431

Query: 75  EY 77
           E+
Sbjct: 432 EH 433

[Close]

BLAST of MS015641 vs. TAIR 10
Match: AT5G63860.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 44.3 bits (103), Expect = 5.2e-05
Identity = 22/63 (34.92%), Postives = 34/63 (53.97%), Query Frame = 0


Query: 13  GAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGFNHTGA 72
           G ++ WGW            +  GQ+G G+++D   P+ V   ++ K VQVSCG+ HT A
Sbjct: 295 GKLYGWGW------------NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLA 345

Query: 73  ILE 76
           + E
Sbjct: 355 VTE 345

[Close]

BLAST of MS015641 vs. TAIR 10
Match: AT1G65920.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 41.2 bits (95), Expect = 4.4e-04
Identity = 26/68 (38.24%), Postives = 34/68 (50.00%), Query Frame = 0


Query: 8   VIEPGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPMMVDIGENVKSVQVSCGF 67
           ++   G +FT+G     GTF        G LGHGS     KP  V+    +K + VSCG 
Sbjct: 409 IVTSSGQLFTYG----SGTF--------GVLGHGSLESVTKPKEVESLRRMKVISVSCGP 464

Query: 68  NHTGAILE 76
            HT AI+E
Sbjct: 469 WHTAAIVE 464

The following BLAST results are available for this feature:

BLAST of MS015641 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154913.1	1.2e-30	100.00	ultraviolet-B receptor UVR8 isoform X2 [Momordica charantia]	[more]
XP_022154912.1	1.2e-30	100.00	ultraviolet-B receptor UVR8 isoform X1 [Momordica charantia]	[more]
XP_038883567.1	2.8e-29	93.94	ultraviolet-B receptor UVR8 isoform X1 [Benincasa hispida]	[more]
XP_038883571.1	2.8e-29	93.94	ultraviolet-B receptor UVR8 isoform X5 [Benincasa hispida]	[more]
XP_022966331.1	1.1e-28	93.85	ultraviolet-B receptor UVR8 isoform X1 [Cucurbita maxima]	[more]

BLAST of MS015641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FN03	7.3e-04	34.92	Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1	[more]

BLAST of MS015641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLK8	5.6e-31	100.00	ultraviolet-B receptor UVR8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1DMZ3	5.6e-31	100.00	ultraviolet-B receptor UVR8 isoform X1 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HRS2	5.2e-29	93.85	PH, RCC1 and FYVE domains-containing protein 1 isoform X3 OS=Cucurbita maxima OX...	[more]
A0A6J1HMP4	5.2e-29	93.85	ultraviolet-B receptor UVR8 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114660...	[more]
A0A6J1HP08	5.2e-29	93.85	ultraviolet-B receptor UVR8 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114660...	[more]

BLAST of MS015641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08710.1	2.2e-27	79.03	Regulator of chromosome condensation (RCC1) family protein	[more]
AT5G63860.1	5.2e-05	34.92	Regulator of chromosome condensation (RCC1) family protein	[more]
AT1G65920.1	4.4e-04	38.24	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000408	Regulator of chromosome condensation, RCC1	PFAM	PF00415	RCC1	coord: 31..73 e-value: 1.2E-6 score: 29.0
IPR000408	Regulator of chromosome condensation, RCC1	PROSITE	PS50012	RCC1_3	coord: 13..76 score: 10.745299
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	GENE3D	2.130.10.30		coord: 2..76 e-value: 4.0E-11 score: 44.4
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	SUPERFAMILY	50985	RCC1/BLIP-II	coord: 4..75
None	No IPR available	PANTHER	PTHR45622:SF21	OS11G0545800 PROTEIN	coord: 9..77
None	No IPR available	PANTHER	PTHR45622	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	coord: 9..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015641.1	MS015641.1	mRNA