MS015574 (gene) Bitter gourd (TR) v1

Overview
NameMS015574
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Locationscaffold627: 313671 .. 314084 (+)
RNA-Seq ExpressionMS015574
SyntenyMS015574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTCTCCTCCTCCGGACGGCTTTTTCAAAATTAATACAGATGCTGGTTTCGTTGCTGTCCCGAGTCGGGGTGGTTTAGGGATAATTATTTGCAATGCTAGGGGTGAGGTTTTTCTTGCTGCTGCTACCTCTCTCCCGCGGTGTGCTTCGGTGGATCAAGCGGAGGCTTTGGCTTTGCACCCGGGGATTTCGCTTGCTATTGATGCCGACCTCTTCCCTTTGCAACTTGAGTCAGACTCACTGCAGTGCTTCCGTGGGCTTGACAAGATGGTAGAGGATCTGTCGGAAGTGGGGTCTATTCTTGCTGATATTCGGTCCCTCTGCTCCCTTATTGGTGGTGTTCTGTTTAGCTTCACGCCTTGTACAGGAAATGCTGCGGCTCACAAGCTGGCGGCTTTGGCACTTTCTCGCTCT

mRNA sequence

TGGTCTCCTCCTCCGGACGGCTTTTTCAAAATTAATACAGATGCTGGTTTCGTTGCTGTCCCGAGTCGGGGTGGTTTAGGGATAATTATTTGCAATGCTAGGGGTGAGGTTTTTCTTGCTGCTGCTACCTCTCTCCCGCGGTGTGCTTCGGTGGATCAAGCGGAGGCTTTGGCTTTGCACCCGGGGATTTCGCTTGCTATTGATGCCGACCTCTTCCCTTTGCAACTTGAGTCAGACTCACTGCAGTGCTTCCGTGGGCTTGACAAGATGGTAGAGGATCTGTCGGAAGTGGGGTCTATTCTTGCTGATATTCGGTCCCTCTGCTCCCTTATTGGTGGTGTTCTGTTTAGCTTCACGCCTTGTACAGGAAATGCTGCGGCTCACAAGCTGGCGGCTTTGGCACTTTCTCGCTCT

Coding sequence (CDS)

TGGTCTCCTCCTCCGGACGGCTTTTTCAAAATTAATACAGATGCTGGTTTCGTTGCTGTCCCGAGTCGGGGTGGTTTAGGGATAATTATTTGCAATGCTAGGGGTGAGGTTTTTCTTGCTGCTGCTACCTCTCTCCCGCGGTGTGCTTCGGTGGATCAAGCGGAGGCTTTGGCTTTGCACCCGGGGATTTCGCTTGCTATTGATGCCGACCTCTTCCCTTTGCAACTTGAGTCAGACTCACTGCAGTGCTTCCGTGGGCTTGACAAGATGGTAGAGGATCTGTCGGAAGTGGGGTCTATTCTTGCTGATATTCGGTCCCTCTGCTCCCTTATTGGTGGTGTTCTGTTTAGCTTCACGCCTTGTACAGGAAATGCTGCGGCTCACAAGCTGGCGGCTTTGGCACTTTCTCGCTCT

Protein sequence

WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALHPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSLIGGVLFSFTPCTGNAAAHKLAALALSRS
Homology
BLAST of MS015574 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 7.1e-15
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIIC-NARGEVFLAAATSLPRCASVDQAEALAL 60
           W P  +G FK+ TDA F ++    GLG+II  + RG+V  +A   L   ASVD AEALA 
Sbjct: 90  WCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHRGQVLASATKYLEHVASVDDAEALAA 149

Query: 61  HPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSLIGGVLFSFT 120
             G+ +A++  + P+ LE+DSL+ +    +  E LS+ GSI+  +++  +    V +SFT
Sbjct: 150 VEGLRVAMETGISPILLETDSLRIYNLFARDKEGLSKTGSIIEYVKTHLATRLQVSYSFT 209

Query: 121 PCTGNAAAHKLAALAL 136
             TGN  AH LA  AL
Sbjct: 210 KRTGNTIAHLLARRAL 225

BLAST of MS015574 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 56/135 (41.48%), Postives = 72/135 (53.33%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALH 60
           W PP    +KINTDA F+A     GLGIII N RG+V  +A   L    SVD AEA+   
Sbjct: 34  WLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAV 93

Query: 61  PGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSLIGGVLFSFTP 120
            G+ LA    + P+ LE+DS + F    +  EDLSE G I+   ++  +      F+F  
Sbjct: 94  EGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFVK 153

Query: 121 CTGNAAAHKLAALAL 136
             GN AAH LA  AL
Sbjct: 154 REGNKAAHMLARRAL 168

BLAST of MS015574 vs. NCBI nr
Match: XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-13
Identity = 53/136 (38.97%), Postives = 69/136 (50.74%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALH 60
           W PP   FFK+N DA       R G G +I N  GEV  A +   P  +S D+AE LA  
Sbjct: 350 WRPPAHPFFKMNFDAAIFNDSGRSGFGAVIRNELGEVMAALSAIGPSVSSSDEAETLACR 409

Query: 61  PGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSLIGGVLFSFTP 120
             +  A+DA    L +E DS+   + L     DLS VG+++ADI+ L S +  V FS+  
Sbjct: 410 KAMEFAVDAGFNELIIEGDSINVIKALSSSSPDLSVVGNVVADIKCLISGLRRVSFSWVN 469

Query: 121 CTGNAAAHKLAALALS 137
              N  AH LA  A S
Sbjct: 470 RDCNRVAHALAKFANS 485

BLAST of MS015574 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-13
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALH 60
           W PP     K+N DA F       G+G+II ++ G V+L A   L R + VD  E  A++
Sbjct: 104 WRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVY 163

Query: 61  PGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIR-SLCSLIGGVLFSFT 120
            GI LA++A     Q+E+DSL+ F  L     D SEVG + + I+  L S    V FSFT
Sbjct: 164 EGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHAERVSFSFT 223

Query: 121 PCTGNAAAHKLAALALS 137
              GNA AH LA LAL+
Sbjct: 224 HRNGNAXAHLLAQLALT 240

BLAST of MS015574 vs. NCBI nr
Match: XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-13
Identity = 56/137 (40.88%), Postives = 74/137 (54.01%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALH 60
           W PP   FFK+N DA F       GL I+I ++   V L+A   +   + V  AE LA  
Sbjct: 73  WCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQ 132

Query: 61  PGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSL--IGGVLFSF 120
            G+ LAI+A L P Q+E+DS Q F  L    ED SE+G + + IR + S   IGG  FSF
Sbjct: 133 EGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGG-FSF 192

Query: 121 TPCTGNAAAHKLAALAL 136
               GN+ AH LA + +
Sbjct: 193 VNREGNSGAHTLARMGM 208

BLAST of MS015574 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIIC-NARGEVFLAAATSLPRCASVDQAEALAL 60
           W P  +G FK+ TDA F ++    GLG+II  + RG+V  +A   L   ASVD AEALA 
Sbjct: 90  WCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHRGQVLASATKYLEHVASVDDAEALAA 149

Query: 61  HPGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSLIGGVLFSFT 120
             G+ +A++  + P+ LE+DSL+ +    +  E LS+ GSI+  +++  +    V +SFT
Sbjct: 150 VEGLRVAMETGISPILLETDSLRIYNLFARDKEGLSKTGSIIEYVKTHLATRLQVSYSFT 209

Query: 121 PCTGNAAAHKLAALAL 136
             TGN  AH LA  AL
Sbjct: 210 KRTGNTIAHLLARRAL 225

BLAST of MS015574 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.9e-15
Identity = 56/135 (41.48%), Postives = 72/135 (53.33%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALH 60
           W PP    +KINTDA F+A     GLGIII N RG+V  +A   L    SVD AEA+   
Sbjct: 34  WLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVAV 93

Query: 61  PGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSLIGGVLFSFTP 120
            G+ LA    + P+ LE+DS + F    +  EDLSE G I+   ++  +      F+F  
Sbjct: 94  EGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFVK 153

Query: 121 CTGNAAAHKLAALAL 136
             GN AAH LA  AL
Sbjct: 154 REGNKAAHMLARRAL 168

BLAST of MS015574 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALH 60
           W PP     K+N DA F       G+G+II ++ G V+L A   L R + VD  E  A++
Sbjct: 104 WRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVY 163

Query: 61  PGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIR-SLCSLIGGVLFSFT 120
            GI LA++A     Q+E+DSL+ F  L     D SEVG + + I+  L S    V FSFT
Sbjct: 164 EGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHAERVSFSFT 223

Query: 121 PCTGNAAAHKLAALALS 137
              GNA AH LA LAL+
Sbjct: 224 HRNGNAXAHLLAQLALT 240

BLAST of MS015574 vs. ExPASy TrEMBL
Match: A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 56/137 (40.88%), Postives = 74/137 (54.01%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALH 60
           W PP   FFK+N DA F       GL I+I ++   V L+A   +   + V  AE LA  
Sbjct: 73  WCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDVTLAECLAAQ 132

Query: 61  PGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRSLCSL--IGGVLFSF 120
            G+ LAI+A L P Q+E+DS Q F  L    ED SE+G + + IR + S   IGG  FSF
Sbjct: 133 EGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSLHIGGG-FSF 192

Query: 121 TPCTGNAAAHKLAALAL 136
               GN+ AH LA + +
Sbjct: 193 VNREGNSGAHTLARMGM 208

BLAST of MS015574 vs. ExPASy TrEMBL
Match: V4UMR3 (RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027161mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 45/139 (32.37%), Postives = 74/139 (53.24%), Query Frame = 0

Query: 1   WSPPPDGFFKINTDAGFVAVPSRGGLGIIICNARGEVFLAAATSLPRCASVDQAEALALH 60
           W  PP  ++K+N DA   +   R G+G+++CN+ GEV  A+  ++     ++  EA+A+H
Sbjct: 3   WQSPPPSWYKVNVDAAVSSTEDRAGIGVLVCNSTGEVMAASICTVIFSRDIEFVEAVAVH 62

Query: 61  PGISLAIDADLFPLQLESDSLQCFRGLDKMVEDLSEVGSILADIRS-LCSLIGGVLFSFT 120
            G+ L +D  L P  +ESDS      ++  +    EVG +++D++  L S        F 
Sbjct: 63  NGLQLVMDIGLAPAIIESDSFNVVNLINNKIHSRCEVGWLISDVQEVLSSSESSFQVKFA 122

Query: 121 PCTGNAAAHKLAALALSRS 139
           P + N  AH L+ LAL  S
Sbjct: 123 PRSCNEVAHHLSKLALCNS 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139684.17.1e-1540.44uncharacterized protein LOC111010533 [Momordica charantia][more]
XP_022140628.11.2e-1441.48uncharacterized protein LOC111011237 [Momordica charantia][more]
XP_023904177.13.0e-1338.97uncharacterized protein LOC112015942 [Quercus suber][more]
XP_022150944.13.0e-1341.61uncharacterized protein LOC111018973 [Momordica charantia][more]
XP_022135942.13.9e-1340.88uncharacterized protein LOC111007775 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CDQ43.5e-1540.44uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6J1CIF15.9e-1541.48uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1DBJ71.5e-1341.61uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1C4671.9e-1340.88uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
V4UMR31.9e-1332.37RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CI... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 12..134
e-value: 6.6E-21
score: 74.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 9..138
e-value: 4.5E-12
score: 48.1
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 1..121
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 11..126
e-value: 8.57442E-17
score: 69.2652
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 8..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015574.1MS015574.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity