MS015414 (gene) Bitter gourd (TR) v1

Overview


Name	MS015414
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	hapless 8
Location	scaffold586: 191095 .. 191292 (+)
RNA-Seq Expression	MS015414
Synteny	MS015414

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATTTGTTTGCAGACAGTACACTCTTTCTTGTCGTCAGAAGAACTTATTTCATTGTTGGCCATTTCCAGTCAAGTATCTGCTTCTATGTCTGAGCCATGGTGTCAACAATATTTTGCCACCACTTGATCTCCCTCCCTATGTCATTCAATCATCCGAACATGTCCGCTCGATCGATTGTATGCAGAAAGACAACAAA

mRNA sequence

TCATTTGTTTGCAGACAGTACACTCTTTCTTGTCGTCAGAAGAACTTATTTCATTGTTGGCCATTTCCAGTCAAGTATCTGCTTCTATGTCTGAGCCATGGTGTCAACAATATTTTGCCACCACTTGATCTCCCTCCCTATGTCATTCAATCATCCGAACATGTCCGCTCGATCGATTGTATGCAGAAAGACAACAAA

Coding sequence (CDS)

TCATTTGTTTGCAGACAGTACACTCTTTCTTGTCGTCAGAAGAACTTATTTCATTGTTGGCCATTTCCAGTCAAGTATCTGCTTCTATGTCTGAGCCATGGTGTCAACAATATTTTGCCACCACTTGATCTCCCTCCCTATGTCATTCAATCATCCGAACATGTCCGCTCGATCGATTGTATGCAGAAAGACAACAAA

Protein sequence

SFVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCMQKDNK

Homology

[Close]

BLAST of MS015414 vs. NCBI nr
Match: XP_022145235.1 (uncharacterized protein LOC111014738 [Momordica charantia] >XP_022145236.1 uncharacterized protein LOC111014738 [Momordica charantia] >XP_022145237.1 uncharacterized protein LOC111014738 [Momordica charantia])

HSP 1 Score: 139.8 bits (351), Expect = 8.4e-30
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 2  FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
          F  RQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM
Sbjct: 16 FSIRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 75

Query: 62 QKDNK 67
          QKDNK
Sbjct: 76 QKDNK 80

[Close]

BLAST of MS015414 vs. NCBI nr
Match: XP_022972113.1 (uncharacterized protein LOC111470745 [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-15
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 2  FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
          F  RQYTLSCRQKN+F CWPFP KYLLLC  HGV N+LPP+  P  VIQSSE   SID  
Sbjct: 17 FSIRQYTLSCRQKNIFDCWPFPDKYLLLCQKHGVTNVLPPIHPPRSVIQSSEDDHSID-F 76

Query: 62 QKDNK 67
          + DNK
Sbjct: 77 KADNK 80

[Close]

BLAST of MS015414 vs. NCBI nr
Match: XP_022932720.1 (uncharacterized protein LOC111439185 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-15
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 2  FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
          F  RQYTLSCRQKN+F CWPFP KYLLLC  HGV N+LPP+  P  VIQSSE   SID  
Sbjct: 17 FSIRQYTLSCRQKNIFDCWPFPDKYLLLCQKHGVTNVLPPIHPPRSVIQSSEDDHSID-F 76

Query: 62 QKDNK 67
          + DNK
Sbjct: 77 KADNK 80

[Close]

BLAST of MS015414 vs. NCBI nr
Match: KAG7029091.1 (hypothetical protein SDJN02_10275 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 2  FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
          F  RQYTLSCRQKN+F CWPFP KYL+LC  HGV+N+LPP+  P  VIQSSE   SID  
Sbjct: 17 FSIRQYTLSCRQKNIFDCWPFPDKYLILCQKHGVSNVLPPIHPPRSVIQSSEDDHSID-F 76

Query: 62 QKDNK 67
          + DNK
Sbjct: 77 KADNK 80

[Close]

BLAST of MS015414 vs. NCBI nr
Match: KAG6597651.1 (hypothetical protein SDJN03_10831, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 2   FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
           F  RQYTLSCRQKN+F CWPFP KYL+LC  HGV+N+LPP+  P  VIQSSE   SID  
Sbjct: 511 FSIRQYTLSCRQKNIFDCWPFPDKYLILCQKHGVSNVLPPIHPPRSVIQSSEDDHSID-F 570

Query: 62  QKDNK 67
           + DNK
Sbjct: 571 KADNK 574

[Close]

BLAST of MS015414 vs. ExPASy TrEMBL
Match: A0A6J1CW12 (uncharacterized protein LOC111014738 OS=Momordica charantia OX=3673 GN=LOC111014738 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-30
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 2  FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
          F  RQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM
Sbjct: 16 FSIRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 75

Query: 62 QKDNK 67
          QKDNK
Sbjct: 76 QKDNK 80

[Close]

BLAST of MS015414 vs. ExPASy TrEMBL
Match: A0A6J1I8Y1 (uncharacterized protein LOC111470745 OS=Cucurbita maxima OX=3661 GN=LOC111470745 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 2  FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
          F  RQYTLSCRQKN+F CWPFP KYLLLC  HGV N+LPP+  P  VIQSSE   SID  
Sbjct: 17 FSIRQYTLSCRQKNIFDCWPFPDKYLLLCQKHGVTNVLPPIHPPRSVIQSSEDDHSID-F 76

Query: 62 QKDNK 67
          + DNK
Sbjct: 77 KADNK 80

[Close]

BLAST of MS015414 vs. ExPASy TrEMBL
Match: A0A6J1F2X5 (uncharacterized protein LOC111439185 OS=Cucurbita moschata OX=3662 GN=LOC111439185 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 2  FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
          F  RQYTLSCRQKN+F CWPFP KYLLLC  HGV N+LPP+  P  VIQSSE   SID  
Sbjct: 17 FSIRQYTLSCRQKNIFDCWPFPDKYLLLCQKHGVTNVLPPIHPPRSVIQSSEDDHSID-F 76

Query: 62 QKDNK 67
          + DNK
Sbjct: 77 KADNK 80

[Close]

BLAST of MS015414 vs. ExPASy TrEMBL
Match: W9RWA5 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021765 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.1e-10
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  SFVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDC 60
          SF  RQY L+ RQK+ FH WPFP KYL +CLSHG+N+ LPP +     I+S   +R ++C
Sbjct: 22 SFSIRQYVLAYRQKDFFHNWPFPEKYLQMCLSHGINDALPPFEPHHIAIESIRGLRRLNC 81

Query: 61 MQKDNK 67
           ++  +
Sbjct: 82 SRQSKQ 87

[Close]

BLAST of MS015414 vs. ExPASy TrEMBL
Match: A0A251QZ76 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G176100 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-09
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 2  FVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDCM 61
          F  RQY L+CRQK++F  WPFP KYL +CL++G++++LPPL+     IQS      ++C 
Sbjct: 33 FSIRQYVLACRQKDVFSNWPFPEKYLQICLNYGISDVLPPLESHNSAIQSLRGAVGLNCT 92

Query: 62 QKDNK 67
          Q+D++
Sbjct: 93 QQDDE 97

[Close]

BLAST of MS015414 vs. TAIR 10
Match: AT5G56250.2 (hapless 8 )

HSP 1 Score: 50.4 bits (119), Expect = 6.2e-07
Identity = 24/66 (36.36%), Postives = 34/66 (51.52%), Query Frame = 0


Query: 1   SFVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDC 60
           +F  R Y  S R KN+   WPF    L LCL+HG+ + LPP+  P     +  HV ++  
Sbjct: 39  TFSIRDYAFSYRTKNIKKSWPFSSTSLQLCLNHGLTDPLPPIQPPEVKKPNITHVEAVSH 98

Query: 61  MQKDNK 67
            +K  K
Sbjct: 99  KRKSEK 104

[Close]

BLAST of MS015414 vs. TAIR 10
Match: AT5G56250.1 (hapless 8 )

HSP 1 Score: 50.4 bits (119), Expect = 6.2e-07
Identity = 24/66 (36.36%), Postives = 34/66 (51.52%), Query Frame = 0


Query: 1   SFVCRQYTLSCRQKNLFHCWPFPVKYLLLCLSHGVNNILPPLDLPPYVIQSSEHVRSIDC 60
           +F  R Y  S R KN+   WPF    L LCL+HG+ + LPP+  P     +  HV ++  
Sbjct: 39  TFSIRDYAFSYRTKNIKKSWPFSSTSLQLCLNHGLTDPLPPIQPPEVKKPNITHVEAVSH 98

Query: 61  MQKDNK 67
            +K  K
Sbjct: 99  KRKSEK 104

The following BLAST results are available for this feature:

BLAST of MS015414 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145235.1	8.4e-30	96.92	uncharacterized protein LOC111014738 [Momordica charantia] >XP_022145236.1 uncha...	[more]
XP_022972113.1	3.4e-15	67.69	uncharacterized protein LOC111470745 [Cucurbita maxima]	[more]
XP_022932720.1	3.4e-15	67.69	uncharacterized protein LOC111439185 [Cucurbita moschata]	[more]
KAG7029091.1	4.5e-15	66.15	hypothetical protein SDJN02_10275 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6597651.1	4.5e-15	66.15	hypothetical protein SDJN03_10831, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS015414 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015414 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CW12	4.1e-30	96.92	uncharacterized protein LOC111014738 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1I8Y1	1.7e-15	67.69	uncharacterized protein LOC111470745 OS=Cucurbita maxima OX=3661 GN=LOC111470745...	[more]
A0A6J1F2X5	1.7e-15	67.69	uncharacterized protein LOC111439185 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
W9RWA5	6.1e-10	46.97	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021765 PE=4 SV=1	[more]
A0A251QZ76	1.0e-09	46.15	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G176100 PE=4 SV=1	[more]

BLAST of MS015414 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56250.2	6.2e-07	36.36	hapless 8	[more]
AT5G56250.1	6.2e-07	36.36	hapless 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35767:SF8	SUBFAMILY NOT NAMED	coord: 1..65
None	No IPR available	PANTHER	PTHR35767	HAPLESS PROTEIN	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015414.1	MS015414.1	mRNA