MS015401 (gene) Bitter gourd (TR) v1

Overview


Name	MS015401
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CCHC-type domain-containing protein
Location	scaffold586: 90188 .. 90409 (-)
RNA-Seq Expression	MS015401
Synteny	MS015401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGTCTAGGGAATGCGATTGGAAACTTTGTGGATGTTTATTGCAATGAGAAAGGATTTAGTTGGGGTGCGAGCCTGCAAATTAGGGTGTCGATTGACATAACCAAACCTCTGAGAAGAGGAATTAATATTAACATTGATGGTCCAATGGGAGGATGTTGGATTCCGATCCAATATGAATGCTTGCCCGACTTTTGCTATTTTTGTGGTGTGATAGGTCAT

mRNA sequence

ATCCGTCTAGGGAATGCGATTGGAAACTTTGTGGATGTTTATTGCAATGAGAAAGGATTTAGTTGGGGTGCGAGCCTGCAAATTAGGGTGTCGATTGACATAACCAAACCTCTGAGAAGAGGAATTAATATTAACATTGATGGTCCAATGGGAGGATGTTGGATTCCGATCCAATATGAATGCTTGCCCGACTTTTGCTATTTTTGTGGTGTGATAGGTCAT

Coding sequence (CDS)

ATCCGTCTAGGGAATGCGATTGGAAACTTTGTGGATGTTTATTGCAATGAGAAAGGATTTAGTTGGGGTGCGAGCCTGCAAATTAGGGTGTCGATTGACATAACCAAACCTCTGAGAAGAGGAATTAATATTAACATTGATGGTCCAATGGGAGGATGTTGGATTCCGATCCAATATGAATGCTTGCCCGACTTTTGCTATTTTTGTGGTGTGATAGGTCAT

Protein sequence

IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

Homology

[Close]

BLAST of MS015401 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1   IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYE 60
           IRLGNAIGNFVDV CNEKGFSWGASL+IRV IDITKPLRRGI INIDGPMGGCWIPIQYE
Sbjct: 146 IRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYE 205

Query: 61  CLPDFCYFCGVIGH 75
            LPDFCYFCGVIGH
Sbjct: 206 RLPDFCYFCGVIGH 219

[Close]

BLAST of MS015401 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 2   RLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYEC 61
           RLGNAIG F DV  N   F WG+ L++RV  D+ KPL RGI +N+DGPMGGCWIPIQYE 
Sbjct: 148 RLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYER 207

Query: 62  LPDFCYFCGVIGH 75
           LPDF Y CG + H
Sbjct: 208 LPDFRYHCGRLDH 220

[Close]

BLAST of MS015401 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 3.6e-21
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1   IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYE 60
           IRLGNA+G F +  C++    WG++L++RV +DI+KPLRRGI +N+DGP+GG WIPIQYE
Sbjct: 147 IRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYE 206

Query: 61  CLPDFCYFCGV 72
            LPDFCY CG+
Sbjct: 207 RLPDFCYHCGL 217

[Close]

BLAST of MS015401 vs. NCBI nr
Match: XP_028117212.1 (uncharacterized protein LOC114314884 [Camellia sinensis])

HSP 1 Score: 86.7 bits (213), Expect = 9.4e-14
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1   IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYE 60
           + LGN +G FVD+   + G +WG +L IR+ I+I KPLRRG+ + + G     WI +QYE
Sbjct: 144 VLLGNTLGKFVDMEYGDGGIAWGRALHIRIEINIDKPLRRGLKLALGG-QEPVWITLQYE 203

Query: 61  CLPDFCYFCGVIGH 75
            LP+FC+ CG++GH
Sbjct: 204 RLPNFCFHCGLLGH 216

[Close]

BLAST of MS015401 vs. NCBI nr
Match: KAF5477665.1 (hypothetical protein F2P56_004284, partial [Juglans regia])

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-13
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1   IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYE 60
           I++GN++G F+ V+ +E+G  WG  L+IRV +DITK L RG+ IN+DG     W+  +YE
Sbjct: 144 IQIGNSLGRFIKVHVDERGIGWGKFLRIRVELDITKTLLRGLFINVDGKK--TWVYFKYE 203

Query: 61  CLPDFCYFCGVIGH 75
            LP  C+ CGVI H
Sbjct: 204 RLPSLCFKCGVIRH 215

[Close]

BLAST of MS015401 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.0e-35
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1   IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYE 60
           IRLGNAIGNFVDV CNEKGFSWGASL+IRV IDITKPLRRGI INIDGPMGGCWIPIQYE
Sbjct: 146 IRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYE 205

Query: 61  CLPDFCYFCGVIGH 75
            LPDFCYFCGVIGH
Sbjct: 206 RLPDFCYFCGVIGH 219

[Close]

BLAST of MS015401 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 2   RLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYEC 61
           RLGNAIG F DV  N   F WG+ L++RV  D+ KPL RGI +N+DGPMGGCWIPIQYE 
Sbjct: 148 RLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYER 207

Query: 62  LPDFCYFCGVIGH 75
           LPDF Y CG + H
Sbjct: 208 LPDFRYHCGRLDH 220

[Close]

BLAST of MS015401 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 44/71 (61.97%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 1   IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYE 60
           IRLGNA+G F +  C++    WG++L++RV +DI+KPLRRGI +N+DGP+GG WIPIQYE
Sbjct: 147 IRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYE 206

Query: 61  CLPDFCYFCGV 72
            LPDFCY CG+
Sbjct: 207 RLPDFCYHCGL 217

[Close]

BLAST of MS015401 vs. ExPASy TrEMBL
Match: A0A803QFF2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1   IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYE 60
           + LGN IG F++VY +     WG  L+IRV+ID+TKPLRRG NI +       W+  +YE
Sbjct: 141 VALGNIIGEFLEVYTDSLNEGWGPFLRIRVNIDVTKPLRRGRNIRLQQVKDKFWVEFRYE 200

Query: 61  CLPDFCYFCGVIGH 75
            LP++C  CG +GH
Sbjct: 201 RLPEWCMECGCLGH 214

[Close]

BLAST of MS015401 vs. ExPASy TrEMBL
Match: A0A803Q6Y1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 3   LGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECL 62
           LGN IG F++V+ +     WG  L+IRV ID+TKPLRRG NI +       W+  +YE L
Sbjct: 139 LGNIIGEFMEVFTDSLNEGWGPFLRIRVKIDVTKPLRRGRNIRLQQIRDKFWVDFRYERL 198

Query: 63  PDFCYFCGVIGH 75
           P++C  CG +GH
Sbjct: 199 PEWCMECGCLGH 210

The following BLAST results are available for this feature:

BLAST of MS015401 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	1.7e-34	93.24	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022132681.1	2.1e-21	64.38	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022158377.1	3.6e-21	61.97	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_028117212.1	9.4e-14	47.30	uncharacterized protein LOC114314884 [Camellia sinensis]	[more]
KAF5477665.1	1.6e-13	48.65	hypothetical protein F2P56_004284, partial [Juglans regia]	[more]

BLAST of MS015401 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	8.0e-35	93.24	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1BSZ1	1.0e-21	64.38	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DX30	1.7e-21	61.97	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A803QFF2	1.7e-13	47.30	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q6Y1	1.5e-12	47.22	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MS015401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 32..74 e-value: 1.2E-11 score: 44.1
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 2..74
None	No IPR available	PANTHER	PTHR31286:SF26	BNAC07G15150D PROTEIN	coord: 2..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015401.1	MS015401.1	mRNA