MS015400 (gene) Bitter gourd (TR) v1

Overview


Name	MS015400
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold586: 85565 .. 85741 (-)
RNA-Seq Expression	MS015400
Synteny	MS015400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTGTGATGATGAAAATCGGGTACAAGCAGCGATGATTTCTACCCAGGGTTTGGGAAGCCCCCTAATGGTAGAAATCCTTGCTATCAGAGAAGGAATTCGTTTGGCGATCCGGATGGGTTTCAGTAAGGTGGTGGTCGAATCTGACTCCCTCGAAGCGGTTAAACTAATAGAGAAG

mRNA sequence

ATCTGTGATGATGAAAATCGGGTACAAGCAGCGATGATTTCTACCCAGGGTTTGGGAAGCCCCCTAATGGTAGAAATCCTTGCTATCAGAGAAGGAATTCGTTTGGCGATCCGGATGGGTTTCAGTAAGGTGGTGGTCGAATCTGACTCCCTCGAAGCGGTTAAACTAATAGAGAAG

Coding sequence (CDS)

ATCTGTGATGATGAAAATCGGGTACAAGCAGCGATGATTTCTACCCAGGGTTTGGGAAGCCCCCTAATGGTAGAAATCCTTGCTATCAGAGAAGGAATTCGTTTGGCGATCCGGATGGGTTTCAGTAAGGTGGTGGTCGAATCTGACTCCCTCGAAGCGGTTAAACTAATAGAGAAG

Protein sequence

ICDDENRVQAAMISTQGLGSPLMVEILAIREGIRLAIRMGFSKVVVESDSLEAVKLIEK

Homology

[Close]

BLAST of MS015400 vs. NCBI nr
Match: XP_022155289.1 (uncharacterized protein LOC111022426 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 3   DDENRVQAAMISTQGLGSPLMVEILAIREGIRLAIRMGFSKVVVESDSLEAVKLI 58
           D    + AAMI    + +PL+ EILAIREG+RLA R+G  +V+VESDSLEA+ LI
Sbjct: 161 DGNAEIVAAMIDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLI 215

[Close]

BLAST of MS015400 vs. NCBI nr
Match: KAF1879364.1 (hypothetical protein Lal_00005830 [Lupinus albus])

HSP 1 Score: 53.5 bits (127), Expect = 7.1e-04
Identity = 25/57 (43.86%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   ICDDENRVQAAMISTQGLGSPLMVEILAIREGIRLAIRMGFSKVVVESDSLEAVKLI 58
           I D E R  ++  +  G+GSP++VE+LA+  G+ LA  +GF ++++ESD LEAV++I
Sbjct: 415 IRDHEGRWLSSFSANFGVGSPILVELLAMEHGLNLAWDLGFKEIILESDCLEAVQII 471

[Close]

BLAST of MS015400 vs. ExPASy TrEMBL
Match: A0A6J1DPU1 (uncharacterized protein LOC111022426 OS=Momordica charantia OX=3673 GN=LOC111022426 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-06
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 3   DDENRVQAAMISTQGLGSPLMVEILAIREGIRLAIRMGFSKVVVESDSLEAVKLI 58
           D    + AAMI    + +PL+ EILAIREG+RLA R+G  +V+VESDSLEA+ LI
Sbjct: 161 DGNAEIVAAMIDFHVVKTPLLTEILAIREGLRLATRLGVHRVMVESDSLEALNLI 215

[Close]

BLAST of MS015400 vs. ExPASy TrEMBL
Match: A0A6A5MX02 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00005830 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-04
Identity = 25/57 (43.86%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   ICDDENRVQAAMISTQGLGSPLMVEILAIREGIRLAIRMGFSKVVVESDSLEAVKLI 58
           I D E R  ++  +  G+GSP++VE+LA+  G+ LA  +GF ++++ESD LEAV++I
Sbjct: 415 IRDHEGRWLSSFSANFGVGSPILVELLAMEHGLNLAWDLGFKEIILESDCLEAVQII 471

The following BLAST results are available for this feature:

BLAST of MS015400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155289.1	1.3e-05	56.36	uncharacterized protein LOC111022426 [Momordica charantia]	[more]
KAF1879364.1	7.1e-04	43.86	hypothetical protein Lal_00005830 [Lupinus albus]	[more]

BLAST of MS015400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPU1	6.2e-06	56.36	uncharacterized protein LOC111022426 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6A5MX02	3.4e-04	43.86	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00005830 PE=4 SV=1	[more]

BLAST of MS015400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..59 e-value: 1.0E-5 score: 27.6
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 1..58 e-value: 2.7E-9 score: 36.9
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 1..59 e-value: 9.35467E-15 score: 60.7908
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 12..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015400.1	MS015400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity