MS015394 (gene) Bitter gourd (TR) v1

Overview


Name	MS015394
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold586: 21322 .. 21708 (+)
RNA-Seq Expression	MS015394
Synteny	MS015394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTGGAATCAACAAGAGAAGAACAGAGGCTCAAGCACTCCCAACTTTCAGCTCAACAAGAGGATGTGGAAAGAAGTGAAACCAAAGTGGAAAGAGAAGAAGAGGCAGTAGTGAAAGAACTAAAAGAAGTGAAGAGGCAGAATTTCATAACTCACTGCTTAGTTTCAGCAATGATAATCCTCACAGTTGCTTGGCAAATCTCTGAGGTGTCTTTCATTTTGAAACTCAGAGGTGGGTTGAGCAACCCATTCAAATCCCTAGCCAAAATTCTCAAAAAGAAGACAACTTCAGCAATACATAATCAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCTTGTGAGCCTACCAGATTTTGACTTGGATGGAGAA

mRNA sequence

CAGGTGGAATCAACAAGAGAAGAACAGAGGCTCAAGCACTCCCAACTTTCAGCTCAACAAGAGGATGTGGAAAGAAGTGAAACCAAAGTGGAAAGAGAAGAAGAGGCAGTAGTGAAAGAACTAAAAGAAGTGAAGAGGCAGAATTTCATAACTCACTGCTTAGTTTCAGCAATGATAATCCTCACAGTTGCTTGGCAAATCTCTGAGGTGTCTTTCATTTTGAAACTCAGAGGTGGGTTGAGCAACCCATTCAAATCCCTAGCCAAAATTCTCAAAAAGAAGACAACTTCAGCAATACATAATCAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCTTGTGAGCCTACCAGATTTTGACTTGGATGGAGAA

Coding sequence (CDS)

CAGGTGGAATCAACAAGAGAAGAACAGAGGCTCAAGCACTCCCAACTTTCAGCTCAACAAGAGGATGTGGAAAGAAGTGAAACCAAAGTGGAAAGAGAAGAAGAGGCAGTAGTGAAAGAACTAAAAGAAGTGAAGAGGCAGAATTTCATAACTCACTGCTTAGTTTCAGCAATGATAATCCTCACAGTTGCTTGGCAAATCTCTGAGGTGTCTTTCATTTTGAAACTCAGAGGTGGGTTGAGCAACCCATTCAAATCCCTAGCCAAAATTCTCAAAAAGAAGACAACTTCAGCAATACATAATCAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCTTGTGAGCCTACCAGATTTTGACTTGGATGGAGAA

Protein sequence

QVESTREEQRLKHSQLSAQQEDVERSETKVEREEEAVVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEATELPHLNMPALPLVSLPDFDLDGE

Homology

[Close]

BLAST of MS015394 vs. NCBI nr
Match: XP_022145221.1 (uncharacterized protein LOC111014725 [Momordica charantia])

HSP 1 Score: 230.7 bits (587), Expect = 7.1e-57
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   QVESTREEQRLKHSQLSAQQEDVERSETKVEREEEAVVKELKEVKRQNFITHCLVSAMII 60
           QVESTREEQR KHSQLSAQQEDVERSETKVEREEEAVVKEL+EVKRQNFITHCLVSAMII
Sbjct: 31  QVESTREEQRRKHSQLSAQQEDVERSETKVEREEEAVVKELEEVKRQNFITHCLVSAMII 90

Query: 61  LTVAWQISEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEATELPHLNMPALPLVS 120
           LTVAWQ+SEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEATELPHLNMPALP VS
Sbjct: 91  LTVAWQVSEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEATELPHLNMPALPHVS 150

Query: 121 LPDFDLDGE 130
           LPDFDLDGE
Sbjct: 151 LPDFDLDGE 159

[Close]

BLAST of MS015394 vs. NCBI nr
Match: XP_038895500.1 (uncharacterized protein LOC120083719 [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 7.6e-43
Identity = 104/142 (73.24%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 1   QVESTREEQRLKHSQLSAQQEDVERSETKVERE--------------EEAVVKELKEVKR 60
           QVESTREEQRL HSQ+SAQQ+D +  ET++E +              E+ +VKELKEVKR
Sbjct: 48  QVESTREEQRLNHSQISAQQKDEKIIETELEPQSENVERSGRNRVKIEKVIVKELKEVKR 107

Query: 61  QNFITHCLVSAMIILTVAWQISEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEAT 120
           QNFITHCLVSAMIILTVAWQ+SEVSFILKLR GLSNPFKSL  ILK+KTTSAI +QIEAT
Sbjct: 108 QNFITHCLVSAMIILTVAWQVSEVSFILKLRNGLSNPFKSLGTILKRKTTSAIQHQIEAT 167

Query: 121 ELPHLNMPALPLVSLPDFDLDG 129
           ELPHLNMPALP V+LP+FDLDG
Sbjct: 168 ELPHLNMPALPHVNLPEFDLDG 189

[Close]

BLAST of MS015394 vs. NCBI nr
Match: XP_004152113.1 (uncharacterized protein LOC101214522 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-37
Identity = 101/137 (73.72%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 1   QVESTREEQRLKHSQ----------LSAQQE-DVERSETKVEREEEAVVKELKEVKRQNF 60
           +VESTR EQRL HS+          L A++E +VERSE K++ EE  +VKELKEVK+QNF
Sbjct: 53  EVESTRGEQRLNHSKQEDGEIIETNLEAERENNVERSEMKLKTEE--IVKELKEVKKQNF 112

Query: 61  ITHCLVSAMIILTVAWQISEVSFILKLRGG-LSNPFKSLAKILKKKTTSAIHNQIEATEL 120
           ITHCLVSAMIILTVAWQISEVSFILKLR G LSNPFKSLA ILK+KTTSAI +QIEATEL
Sbjct: 113 ITHCLVSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATEL 172

Query: 121 PHLNMPALPLVSLPDFD 126
           PHLN+PALP V+LPDFD
Sbjct: 173 PHLNIPALPHVTLPDFD 187

[Close]

BLAST of MS015394 vs. NCBI nr
Match: KAE8649098.1 (hypothetical protein Csa_015237 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-37
Identity = 101/137 (73.72%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 1   QVESTREEQRLKHSQ----------LSAQQE-DVERSETKVEREEEAVVKELKEVKRQNF 60
           +VESTR EQRL HS+          L A++E +VERSE K++ EE  +VKELKEVK+QNF
Sbjct: 45  EVESTRGEQRLNHSKQEDGEIIETNLEAERENNVERSEMKLKTEE--IVKELKEVKKQNF 104

Query: 61  ITHCLVSAMIILTVAWQISEVSFILKLRGG-LSNPFKSLAKILKKKTTSAIHNQIEATEL 120
           ITHCLVSAMIILTVAWQISEVSFILKLR G LSNPFKSLA ILK+KTTSAI +QIEATEL
Sbjct: 105 ITHCLVSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATEL 164

Query: 121 PHLNMPALPLVSLPDFD 126
           PHLN+PALP V+LPDFD
Sbjct: 165 PHLNIPALPHVTLPDFD 179

[Close]

BLAST of MS015394 vs. NCBI nr
Match: XP_008454012.1 (PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 5.3e-36
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   QVESTREEQRLKH-----------SQLSAQQE-DVERSETKVEREEEAVVKELKEVKRQN 60
           +VESTREEQRL H           + L A+ E +VERSE KV+ EE  +VKELKEVK+QN
Sbjct: 51  EVESTREEQRLNHYSKQEDGEIIETNLEAEGENNVERSEIKVKTEE--IVKELKEVKKQN 110

Query: 61  FITHCLVSAMIILTVAWQISEVSFILKLRGG-LSNPFKSLAKILKKKTTSAIHNQIEATE 120
           F+THCLVSAMIILTVAWQISEVSFILKLR G LSNPFKSL  ILK+KTTSAI +QIEATE
Sbjct: 111 FVTHCLVSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATE 170

Query: 121 LPHLNMPALPLVSLPDFDLD 128
           LP LN+PA+P VSLPDFD D
Sbjct: 171 LPQLNIPAIPHVSLPDFDDD 188

[Close]

BLAST of MS015394 vs. ExPASy TrEMBL
Match: A0A6J1CVQ0 (uncharacterized protein LOC111014725 OS=Momordica charantia OX=3673 GN=LOC111014725 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.4e-57
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   QVESTREEQRLKHSQLSAQQEDVERSETKVEREEEAVVKELKEVKRQNFITHCLVSAMII 60
           QVESTREEQR KHSQLSAQQEDVERSETKVEREEEAVVKEL+EVKRQNFITHCLVSAMII
Sbjct: 31  QVESTREEQRRKHSQLSAQQEDVERSETKVEREEEAVVKELEEVKRQNFITHCLVSAMII 90

Query: 61  LTVAWQISEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEATELPHLNMPALPLVS 120
           LTVAWQ+SEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEATELPHLNMPALP VS
Sbjct: 91  LTVAWQVSEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEATELPHLNMPALPHVS 150

Query: 121 LPDFDLDGE 130
           LPDFDLDGE
Sbjct: 151 LPDFDLDGE 159

[Close]

BLAST of MS015394 vs. ExPASy TrEMBL
Match: A0A0A0KTW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012410 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.3e-37
Identity = 101/137 (73.72%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 1   QVESTREEQRLKHSQ----------LSAQQE-DVERSETKVEREEEAVVKELKEVKRQNF 60
           +VESTR EQRL HS+          L A++E +VERSE K++ EE  +VKELKEVK+QNF
Sbjct: 53  EVESTRGEQRLNHSKQEDGEIIETNLEAERENNVERSEMKLKTEE--IVKELKEVKKQNF 112

Query: 61  ITHCLVSAMIILTVAWQISEVSFILKLRGG-LSNPFKSLAKILKKKTTSAIHNQIEATEL 120
           ITHCLVSAMIILTVAWQISEVSFILKLR G LSNPFKSLA ILK+KTTSAI +QIEATEL
Sbjct: 113 ITHCLVSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATEL 172

Query: 121 PHLNMPALPLVSLPDFD 126
           PHLN+PALP V+LPDFD
Sbjct: 173 PHLNIPALPHVTLPDFD 187

[Close]

BLAST of MS015394 vs. ExPASy TrEMBL
Match: A0A5D3CZN3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001570 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.5e-36
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   QVESTREEQRLKH-----------SQLSAQQE-DVERSETKVEREEEAVVKELKEVKRQN 60
           +VESTREEQRL H           + L A+ E +VERSE KV+ EE  +VKELKEVK+QN
Sbjct: 32  EVESTREEQRLNHYSKQEDGEIIETNLEAEGENNVERSEIKVKTEE--IVKELKEVKKQN 91

Query: 61  FITHCLVSAMIILTVAWQISEVSFILKLRGG-LSNPFKSLAKILKKKTTSAIHNQIEATE 120
           F+THCLVSAMIILTVAWQISEVSFILKLR G LSNPFKSL  ILK+KTTSAI +QIEATE
Sbjct: 92  FVTHCLVSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATE 151

Query: 121 LPHLNMPALPLVSLPDFDLD 128
           LP LN+PA+P VSLPDFD D
Sbjct: 152 LPQLNIPAIPHVSLPDFDDD 169

[Close]

BLAST of MS015394 vs. ExPASy TrEMBL
Match: A0A5A7TSP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003210 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.5e-36
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   QVESTREEQRLKH-----------SQLSAQQE-DVERSETKVEREEEAVVKELKEVKRQN 60
           +VESTREEQRL H           + L A+ E +VERSE KV+ EE  +VKELKEVK+QN
Sbjct: 43  EVESTREEQRLNHYSKQEDGEIIETNLEAEGENNVERSEIKVKTEE--IVKELKEVKKQN 102

Query: 61  FITHCLVSAMIILTVAWQISEVSFILKLRGG-LSNPFKSLAKILKKKTTSAIHNQIEATE 120
           F+THCLVSAMIILTVAWQISEVSFILKLR G LSNPFKSL  ILK+KTTSAI +QIEATE
Sbjct: 103 FVTHCLVSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATE 162

Query: 121 LPHLNMPALPLVSLPDFDLD 128
           LP LN+PA+P VSLPDFD D
Sbjct: 163 LPQLNIPAIPHVSLPDFDDD 180

[Close]

BLAST of MS015394 vs. ExPASy TrEMBL
Match: A0A1S3BXR6 (uncharacterized protein LOC103494562 OS=Cucumis melo OX=3656 GN=LOC103494562 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.5e-36
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   QVESTREEQRLKH-----------SQLSAQQE-DVERSETKVEREEEAVVKELKEVKRQN 60
           +VESTREEQRL H           + L A+ E +VERSE KV+ EE  +VKELKEVK+QN
Sbjct: 51  EVESTREEQRLNHYSKQEDGEIIETNLEAEGENNVERSEIKVKTEE--IVKELKEVKKQN 110

Query: 61  FITHCLVSAMIILTVAWQISEVSFILKLRGG-LSNPFKSLAKILKKKTTSAIHNQIEATE 120
           F+THCLVSAMIILTVAWQISEVSFILKLR G LSNPFKSL  ILK+KTTSAI +QIEATE
Sbjct: 111 FVTHCLVSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATE 170

Query: 121 LPHLNMPALPLVSLPDFDLD 128
           LP LN+PA+P VSLPDFD D
Sbjct: 171 LPQLNIPAIPHVSLPDFDDD 188

[Close]

BLAST of MS015394 vs. TAIR 10
Match: AT1G27300.1 (unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-09
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 7   EEQRLKHSQLSAQQEDVERSETKVEREEEAVVKELKEVKRQNFITHCLVSAMIILTVAWQ 66
           EE++ + S  S+  +     + ++E   E + K++K+VK+QN ITH L+SA IILT+ WQ
Sbjct: 64  EEEKEEESADSSPSKGKSEGQRQLEESIEEIAKDIKKVKKQNKITHVLLSATIILTLVWQ 123

Query: 67  ISEVSFILKLRGGLSNPFKSLAKILK---KKTTSAIHNQIEAT 107
           +SE S I  L+  +S+P +S+  +L    K     I NQ+  T
Sbjct: 124 LSEYSMIFMLKDRISHPVRSIGGMLNGMFKGKLRPIKNQLAGT 166

The following BLAST results are available for this feature:

BLAST of MS015394 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145221.1	7.1e-57	96.90	uncharacterized protein LOC111014725 [Momordica charantia]	[more]
XP_038895500.1	7.6e-43	73.24	uncharacterized protein LOC120083719 [Benincasa hispida]	[more]
XP_004152113.1	4.8e-37	73.72	uncharacterized protein LOC101214522 [Cucumis sativus]	[more]
KAE8649098.1	4.8e-37	73.72	hypothetical protein Csa_015237 [Cucumis sativus]	[more]
XP_008454012.1	5.3e-36	71.43	PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo]	[more]

BLAST of MS015394 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVQ0	3.4e-57	96.90	uncharacterized protein LOC111014725 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0KTW6	2.3e-37	73.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012410 PE=4 SV=1	[more]
A0A5D3CZN3	2.5e-36	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TSP6	2.5e-36	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BXR6	2.5e-36	71.43	uncharacterized protein LOC103494562 OS=Cucumis melo OX=3656 GN=LOC103494562 PE=...	[more]

BLAST of MS015394 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27300.1	7.6e-09	36.89	unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR35280	F17L21.9	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015394.1	MS015394.1	mRNA