MS015353 (gene) Bitter gourd (TR) v1

Overview


Name	MS015353
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	VQ motif-containing protein 8, chloroplastic
Location	scaffold2: 2796211 .. 2796681 (+)
RNA-Seq Expression	MS015353
Synteny	MS015353

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCACGCCCATCTCCCTTGTTGATCCATAAACACTCTCGCTTGATTCGTAAGCCGCCGCCGCAGCTCCGGCAGCCGCTCATTATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCCAAGGATTTCATGGCCCTCGTCCAGCGCCTCACCGGCTTCACCCCGCCGCCGCCGCCCCACGCCGACGACTCCGACAGAAATAACAACGTTAATTTTGATAACGATTCTTCCTCGGTTCTAACGGAGGAGGTTAATTGTGGGGACCACCACCACCACCCCTCCTACGTTAAGGAAGTCCAGAGTCAGAGTCAGAGCCATTCGTTTTTGGCCGACGTTCCGTTATTCACGCCGGCGGGTCTCCGATATGCGCCCGATGCGACGTCGTTTGCGTCCCCCGGCTTGCCTAATTCCTTGTCCCCCTCTTTCATGGAGTTTCTC

mRNA sequence

ATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCACGCCCATCTCCCTTGTTGATCCATAAACACTCTCGCTTGATTCGTAAGCCGCCGCCGCAGCTCCGGCAGCCGCTCATTATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCCAAGGATTTCATGGCCCTCGTCCAGCGCCTCACCGGCTTCACCCCGCCGCCGCCGCCCCACGCCGACGACTCCGACAGAAATAACAACGTTAATTTTGATAACGATTCTTCCTCGGTTCTAACGGAGGAGGTTAATTGTGGGGACCACCACCACCACCCCTCCTACGTTAAGGAAGTCCAGAGTCAGAGTCAGAGCCATTCGTTTTTGGCCGACGTTCCGTTATTCACGCCGGCGGGTCTCCGATATGCGCCCGATGCGACGTCGTTTGCGTCCCCCGGCTTGCCTAATTCCTTGTCCCCCTCTTTCATGGAGTTTCTC

Coding sequence (CDS)

ATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCACGCCCATCTCCCTTGTTGATCCATAAACACTCTCGCTTGATTCGTAAGCCGCCGCCGCAGCTCCGGCAGCCGCTCATTATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCCAAGGATTTCATGGCCCTCGTCCAGCGCCTCACCGGCTTCACCCCGCCGCCGCCGCCCCACGCCGACGACTCCGACAGAAATAACAACGTTAATTTTGATAACGATTCTTCCTCGGTTCTAACGGAGGAGGTTAATTGTGGGGACCACCACCACCACCCCTCCTACGTTAAGGAAGTCCAGAGTCAGAGTCAGAGCCATTCGTTTTTGGCCGACGTTCCGTTATTCACGCCGGCGGGTCTCCGATATGCGCCCGATGCGACGTCGTTTGCGTCCCCCGGCTTGCCTAATTCCTTGTCCCCCTCTTTCATGGAGTTTCTC

Protein sequence

MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL

Homology

[Close]

BLAST of MS015353 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 320.9 bits (821), Expect = 6.3e-84
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60
           MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSHSFL 120
           LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH+HHPSYVKEVQSQSQSHSFL
Sbjct: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSHSFL 120

Query: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL 158
           ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
Sbjct: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL 157

[Close]

BLAST of MS015353 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-37
Identity = 107/167 (64.07%), Postives = 117/167 (70.06%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60
           MSP KSC+INGPRPSPLLIHK SR IRK  PQLRQP+IIYTHSPKIIHTQPKDFMALVQR
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRK--PQLRQPVIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPHADD------SDRNNNVNFDNDSSSVLT--EEVN-CGDHHHHPSYVKEVQ 120
           LTGF PPPPP   +      S+RN N   DNDSSS LT  EE+N CGD     S V +  
Sbjct: 61  LTGFNPPPPPPPSNALSLSFSERNFN---DNDSSSGLTTEEEINECGDQKQ--SVVLKQL 120

Query: 121 SQSQSHSFLADVPLFTPAGLRYAPDATS-FASPGLPNSLSPSFMEFL 158
            Q QS+S L          LRY+ D T+ F+SP L NSLSPSFMEFL
Sbjct: 121 VQRQSNSSL----------LRYSSDVTTPFSSPALINSLSPSFMEFL 150

[Close]

BLAST of MS015353 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 5.8e-29
Identity = 87/157 (55.41%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60
           MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK--PQLRQPLIIYTHSPKIIHTHPKDFMALVQR 60

Query: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSHSFL 120
           LTGF PPPP      +RN+N   DNDS+S +T E +          V E QS      + 
Sbjct: 61  LTGFNPPPP----QPERNSN---DNDSTSGVTSEED----------VNEKQSNCSVLKYS 120

Query: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL 158
           +DV              T F+SP   +SLSPSFM+FL
Sbjct: 121 SDV-------------TTPFSSPAFLSSLSPSFMDFL 125

[Close]

BLAST of MS015353 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-26
Identity = 86/160 (53.75%), Postives = 95/160 (59.38%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRK--PPPQLRQPLIIYTHSPKIIHTQPKDFMALV 60
           MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEE-VNCGDHHHHPSYVKEVQSQSQSH 120
           QRLTG +   PP+AD +  +N     NDSSSV+TEE  NC                    
Sbjct: 61  QRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC-------------------- 112

Query: 121 SFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL 158
                 PLFTP                L NSLSPSFMEFL
Sbjct: 121 ------PLFTPR--------------SLVNSLSPSFMEFL 112

[Close]

BLAST of MS015353 vs. NCBI nr
Match: KGN52621.2 (hypothetical protein Csa_008052 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-26
Identity = 74/107 (69.16%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60
           MSP KS +INGPRPSPLLIH HSRLIRK P QLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRK-PVQLRQPLIIYTHSPKIIHTHPKDFMALVQR 60

Query: 61  LTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHP 105
           LTG  PPPP   P A  S    N+N DNDSSS +T E +  +  + P
Sbjct: 61  LTGCNPPPPLPLPSAKPSLSERNLN-DNDSSSGVTTEEDINEKQNKP 105

[Close]

BLAST of MS015353 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-16
Identity = 65/161 (40.37%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPK 60
           M P +  +ING RPS L +   S  I+       KP P  R  P+IIY HSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQS 120
           DFMALVQRLTG         D+  R N       SSSV+TEEVN GD +    + ++ ++
Sbjct: 61  DFMALVQRLTGL--------DEIIRRNT---SESSSSVVTEEVNVGDDNTAAPFSQD-RT 120

Query: 121 QSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP 152
           Q Q    L D+PLFTP+ +    +P    + SP   +S  P
Sbjct: 121 QRQK---LTDMPLFTPSSMTLFGSPTQLMYMSPNRTDSFRP 146

[Close]

BLAST of MS015353 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-10
Identity = 50/151 (33.11%), Postives = 67/151 (44.37%), Query Frame = 0


Query: 12  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P P  L ++K S +I+KPP         + R P+IIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  FTPPPPPHADDS-------------------------DRNNN------------------ 101
            T     H+D+                          DR NN                  
Sbjct: 101 MT-----HSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAG 160

[Close]

BLAST of MS015353 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 9.0e-09
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 5  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQ 64
          +   I GPRPSPL +HK S  I+K             PPP + R+P++IY  SPK++H  
Sbjct: 20 RQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 79

Query: 65 PKDFMALVQRLTGFT 66
            +FM +VQRLTG +
Sbjct: 80 ASEFMNVVQRLTGIS 94

[Close]

BLAST of MS015353 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 11 GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIH 66
          GP+P+PL +   S ++I+KP          PPQ  Q           P+ IYT +P+IIH
Sbjct: 13 GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

[Close]

BLAST of MS015353 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.1e-84
Identity = 156/157 (99.36%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60
           MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSHSFL 120
           LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH+HHPSYVKEVQSQSQSHSFL
Sbjct: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQSHSFL 120

Query: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL 158
           ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
Sbjct: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL 157

[Close]

BLAST of MS015353 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.8e-29
Identity = 87/157 (55.41%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60
           MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK--PQLRQPLIIYTHSPKIIHTHPKDFMALVQR 60

Query: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSHSFL 120
           LTGF PPPP      +RN+N   DNDS+S +T E +          V E QS      + 
Sbjct: 61  LTGFNPPPP----QPERNSN---DNDSTSGVTSEED----------VNEKQSNCSVLKYS 120

Query: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL 158
           +DV              T F+SP   +SLSPSFM+FL
Sbjct: 121 SDV-------------TTPFSSPAFLSSLSPSFMDFL 125

[Close]

BLAST of MS015353 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.8e-29
Identity = 93/161 (57.76%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60
           MSP KS +INGPRPSPLLIH HSRLIRK P QLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRK-PVQLRQPLIIYTHSPKIIHTHPKDFMALVQR 60

Query: 61  LTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSH 120
           LTG  PPPP   P A  S    N+N DNDSSS +T E +  +   + S +K       SH
Sbjct: 61  LTGCNPPPPLPLPSAKPSLSERNLN-DNDSSSGVTTEEDINEKQSNCSVLK-----YSSH 120

Query: 121 SFLADVPLFTPAGLRYAPDATSFASPG-LPNSLSPSFMEFL 158
               DV              T F+SP  L +SLSPSFM+FL
Sbjct: 121 ----DV-------------TTPFSSPAFLSSSLSPSFMDFL 137

[Close]

BLAST of MS015353 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.8e-29
Identity = 87/157 (55.41%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60
           MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK--PQLRQPLIIYTHSPKIIHTHPKDFMALVQR 60

Query: 61  LTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSHSFL 120
           LTGF PPPP      +RN+N   DNDS+S +T E +          V E QS      + 
Sbjct: 61  LTGFNPPPP----QPERNSN---DNDSTSGVTSEED----------VNEKQSNCSVLKYS 120

Query: 121 ADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL 158
           +DV              T F+SP   +SLSPSFM+FL
Sbjct: 121 SDV-------------TTPFSSPAFLSSLSPSFMDFL 125

[Close]

BLAST of MS015353 vs. ExPASy TrEMBL
Match: W9RYA3 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_015429 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 78/194 (40.21%), Postives = 104/194 (53.61%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKP-------PPQLRQPLIIYTHSPKIIHTQPKD 60
           MSP K   ING RPSPL I+K S  I KP       PPQ  QP+IIYTHSP+IIHT+P++
Sbjct: 1   MSPEKFIKINGARPSPLKINKESHTIYKPSNHHQMNPPQRHQPVIIYTHSPRIIHTEPRN 60

Query: 61  FMALVQRLTGF-----------------------TPPPPPHADDSDRNNNVNFDNDSSSV 120
           FMA+VQ LTG                        +    P   +S  +   + +N+SSSV
Sbjct: 61  FMAVVQNLTGMSRSNDNKNNHKTTSSSSQQRPISSQDSQPVISNSSTSEAKSDNNESSSV 120

Query: 121 LTEEVNCGDHHHHPSYVKEVQSQSQSHSFLADVPLFTP-------AGLRYAPDATSFASP 158
           LT+E+N G   ++          + S+  LAD+PLFTP       A  R+ PDATS  + 
Sbjct: 121 LTDEINNGSDRNY----------TLSNPSLADIPLFTPNFFCSPRAAFRF-PDATSSPNL 180

[Close]

BLAST of MS015353 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-17
Identity = 65/161 (40.37%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 1   MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPK 60
           M P +  +ING RPS L +   S  I+       KP P  R  P+IIY HSPK+IHT+ +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQS 120
           DFMALVQRLTG         D+  R N       SSSV+TEEVN GD +    + ++ ++
Sbjct: 61  DFMALVQRLTGL--------DEIIRRNT---SESSSSVVTEEVNVGDDNTAAPFSQD-RT 120

Query: 121 QSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP 152
           Q Q    L D+PLFTP+ +    +P    + SP   +S  P
Sbjct: 121 QRQK---LTDMPLFTPSSMTLFGSPTQLMYMSPNRTDSFRP 146

[Close]

BLAST of MS015353 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 50/151 (33.11%), Postives = 67/151 (44.37%), Query Frame = 0


Query: 12  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P P  L ++K S +I+KPP         + R P+IIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  FTPPPPPHADDS-------------------------DRNNN------------------ 101
            T     H+D+                          DR NN                  
Sbjct: 101 MT-----HSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAG 160

[Close]

BLAST of MS015353 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-10
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 5  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQ 64
          +   I GPRPSPL +HK S  I+K             PPP + R+P++IY  SPK++H  
Sbjct: 20 RQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 79

Query: 65 PKDFMALVQRLTGFT 66
            +FM +VQRLTG +
Sbjct: 80 ASEFMNVVQRLTGIS 94

[Close]

BLAST of MS015353 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.1e-09
Identity = 63/214 (29.44%), Postives = 89/214 (41.59%), Query Frame = 0


Query: 5   KSCDINGPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTH 64
           +S  I GPRP PL +   S ++I+KP          PPQ  Q           P+IIYT 
Sbjct: 7   RSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTV 66

Query: 65  SPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSV------------ 124
           SP+IIHT P +FM LVQRLTG T         S  +++ +   D+S++            
Sbjct: 67  SPRIIHTHPNNFMTLVQRLTGKT---STSTTSSSYSSSTSAPKDASTMVDTSHGLISPAA 126

Query: 125 ---LTEEVNCGD----------------HHHHPSYVKEVQSQSQSHSFLADVPLFTPAGL 157
              +TE+ N  +                H+HH  + +E Q Q+Q      + P F  AG+
Sbjct: 127 RFAVTEKANISNELGTFVGGEGTMDQYYHYHHHHHHQEQQHQNQGF----ERPSFHHAGI 186

[Close]

BLAST of MS015353 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-07
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 11 GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIH 66
          GP+P+PL +   S ++I+KP          PPQ  Q           P+ IYT +P+IIH
Sbjct: 13 GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

The following BLAST results are available for this feature:

BLAST of MS015353 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150646.1	6.3e-84	99.36	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
XP_038893302.1	1.5e-37	64.07	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
XP_008466850.1	5.8e-29	55.41	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
KAG7013019.1	1.2e-26	53.75	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KGN52621.2	2.1e-26	69.16	hypothetical protein Csa_008052 [Cucumis sativus]	[more]

BLAST of MS015353 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA36	4.5e-16	40.37	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LS54	3.7e-10	33.11	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q8LGD5	9.0e-09	42.67	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	3.2e-06	42.86	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of MS015353 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC48	3.1e-84	99.36	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5D3CFH5	2.8e-29	55.41	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0KT78	2.8e-29	57.76	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A1S3CS67	2.8e-29	55.41	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
W9RYA3	3.7e-21	40.21	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_015429 PE=4 SV...	[more]

BLAST of MS015353 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68450.1	3.2e-17	40.37	VQ motif-containing protein	[more]
AT3G18360.1	2.6e-11	33.11	VQ motif-containing protein	[more]
AT3G18690.1	6.4e-10	42.67	MAP kinase substrate 1	[more]
AT1G21326.1	7.1e-09	29.44	VQ motif-containing protein	[more]
AT1G21320.1	2.3e-07	42.86	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 41..68 e-value: 1.8E-11 score: 43.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..87
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 8..155
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 8..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015353.1	MS015353.1	mRNA