MS015318 (gene) Bitter gourd (TR) v1

Overview


Name	MS015318
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic
Location	scaffold2: 2567130 .. 2569260 (+)
RNA-Seq Expression	MS015318
Synteny	MS015318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCGCCCAACCACGTCTTCAACCCCAAACCAGGTACTAATTTTTTTCACTCTTTTTCTTCAGTGTTAACCATTAAATATTCTTCGGATTTACTTATTTCATTGTGTTTCTTCGTCCTTTCTGCTTTGATTTTGATTCGCCATTTCTGATCCCTCTTGAAAATTCTCATACATCGTCCTTCCTATGTATCTTATCTTCCAAGGGGGTTTGAATTAAATTCTCGGTTCTAATTTTTTAATCTCAACATCATATTGGCATCTGAACAAGTTTAGTAGCTTCTACTAAGTTATGTGATGATCTCAATTGATCTTTGAAGTTGTTATGCTCGTGCCCTCCTGCCATCATCATCTATTTGCACTGGACTGGACCGATTGTCATAATCTGATAGGGAGTGACTAACAGTTGTAAGGAATGTACCTTAAGACCAAAAAGAATTTTCCCTGTGTATGCAGATATCTTGAATGGATTATATCCTATTCTTCCAGAATCTTCTGTTCTGTGGCATCTTCCTTATGCTAGATTTATAGAAGAATCGATCTCCTTTTTTTCTCCTAGTGTGGTCAATAAGCTGTCTAGCATATGGTACCCCACTTCAATTTCCCATCCAATGGCTATTCTTCTATCATTCTTTATCTTTGTACTTTGCTTTACATGCTTTTTTATTTTTTGTTCCATATTCTCTTTTGCATATGGCTTAGTTGTCAATCACGTTGAAGCTTCATTGTTTCTGGCTATCAGTGACATTAATCTACTTTCTATTCTTTTGAAGATTAAGATTACTTTTCCTCACTTTATTGATTCCATTGCTTTGTTATATTTATATGACTATTGATTAGATTCTTCTCATTTTACAACTTTATCTAATTTATCAAAGTGCCGCACTATGACTGGATTAGCAATGGATAATATAGTATAGTTCTCATAGCTTCATATAAAAGTTTCATTTCAGGGGACAAAAACTGTGTGTGTAGAGGGCTATGCTCGAGCCTTGGTGCAGCGATTGTTAAATCAGCAACAACAGCAGGAAAAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAAAAAGCCACTCCTGGAAGAGAATCCAAGTTTGATTTGAGGTATTAAATATTAGACCGGTTATGTATTCAAAAGACTACTATATACTGAACTAGAAAAGGGGACAAAGAGAGAATAAAGTCTACCAGTTAAAGGCTTTAAAGAGATGGACAGATTCTGGTGTAGGGTCGTCCGAAGACCAATGGTTAGATAGTTTATCACTAATCTTTACAATTTTAATTCTAAACCAGGACTACTACTCTTACGCAATGCATCTTTTGCTAATAACTTTACATGTATGAATTACTTTGTGTTGTCAATCCTGTACTTTGGATGATTTTAGAGATAATGTTATTTTATCAGCTATGCTATGTTGAACTTTGTGTTGAAACTCCAAAAACAAAGCGTCTTTATTTATATGAAAATGGGATTCATTTTTTATGATAGCCTCTGTTCTTGTACCTTAACACAGAAACTAAATACATTGACTTTTGAAATTTGAATACATATAATGAATGGCTTTAAAGAGTGGTATGAGCCTGAATTGCAAATGACGGAAATTAAATGGTATCATCTTTTTTGACTGCTTTAAAAAATGAAACCCAGTAGCTGAATTCTTGCTGCAACTTTGGCAGACTTTTGGTTATTAGCAGATGTTGAAGTGATTTTTTGAATGTTTGATTGTACAACTCGATTCTGAATGAATGCACTGATGTCATTATTCTCTGTTGGATAATTCTTTTTCATAGAACGAAGCTTCAAATCTGAACTGGTCATTCTGTATCAATGAAAATGTTCAGGAGATCAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTAGTCCAAGTCCTGATGAAAGTTATCCCTGGAATGACGCTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGACTCTTAAGTTCAATTGAACCTGCAAGTGGTGGGTGCTGC

mRNA sequence

ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCGCCCAACCACGTCTTCAACCCCAAACCAGGGGACAAAAACTGTGTGTGTAGAGGGCTATGCTCGAGCCTTGGTGCAGCGATTGTTAAATCAGCAACAACAGCAGGAAAAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAAAAAGCCACTCCTGGAAGAGAATCCAAGTTTGATTTGAGGAGATCAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTAGTCCAAGTCCTGATGAAAGTTATCCCTGGAATGACGCTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGACTCTTAAGTTCAATTGAACCTGCAAGTGGTGGGTGCTGC

Coding sequence (CDS)

ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCGCCCAACCACGTCTTCAACCCCAAACCAGGGGACAAAAACTGTGTGTGTAGAGGGCTATGCTCGAGCCTTGGTGCAGCGATTGTTAAATCAGCAACAACAGCAGGAAAAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAAAAAGCCACTCCTGGAAGAGAATCCAAGTTTGATTTGAGGAGATCAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTAGTCCAAGTCCTGATGAAAGTTATCCCTGGAATGACGCTCGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGACTCTTAAGTTCAATTGAACCTGCAAGTGGTGGGTGCTGC

Protein sequence

MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

Homology

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BLAST of MS015318 vs. NCBI nr
Match: XP_022150471.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica charantia])

HSP 1 Score: 323.9 bits (829), Expect = 7.5e-85
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNP+PGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60

Query: 61  ATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRES+FDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of MS015318 vs. NCBI nr
Match: XP_038891525.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78
Identity = 145/159 (91.19%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNPKPGD++ VC+GLCS+ GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60

Query: 61  ATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRES+FDLR+SRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRKSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
            NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 CNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of MS015318 vs. NCBI nr
Match: XP_008446565.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Cucumis melo] >KAA0034534.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa] >TYK09088.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.4e-78
Identity = 143/159 (89.94%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGD++ +C+GLC + GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRES+FD+RRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of MS015318 vs. NCBI nr
Match: XP_022968529.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 300.8 bits (769), Expect = 6.8e-78
Identity = 147/160 (91.88%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGK-GGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGD++ VC+GLCS+L A++VKSATTAG+ GGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRES+FDLRRSRKTTPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

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BLAST of MS015318 vs. NCBI nr
Match: KAG7013044.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.8 bits (769), Expect = 6.8e-78
Identity = 144/159 (90.57%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNPKPG+++ VC+GLCS+L A++VKSATTAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGERSSVCKGLCSTLCASVVKSATTAGRGGGLLERPVIEK 60

Query: 61  ATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRES+FDLRRSRKTTPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
            NG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Sbjct: 121 CNGMSLVIICAQADAEEHCTQLRGNGLLSSIEPASGGCC 159

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BLAST of MS015318 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.5e-62
Identity = 113/159 (71.07%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GDK+ V +G C +    +  S + A GKGGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRES+FDLR+S+K  PPYRVILHND+FNKREYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
           H NGL++VI+CAQADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

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BLAST of MS015318 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 26  CVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVIL 85
           C  +G   +      ++       GG+++ P     T  ++    + RS+K  P Y+V+L
Sbjct: 37  CTLQGAFGTFAPQTTRTFVVTWAKGGVMDAP-----TTTQQPASGVERSQKRPPIYKVLL 96

Query: 86  HNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGN 145
           HND++NKREYVV+VL+KV+  +T+D+AV  MQEAH  G++LV+ C Q +AE +C  LR N
Sbjct: 97  HNDNYNKREYVVKVLLKVVEQITVDDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLN 156

Query: 146 GLLSSIEPASGGC 159
           GL S+IEP  GGC
Sbjct: 157 GLTSTIEP--GGC 162

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BLAST of MS015318 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-19
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 75  RKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQAD 134
           RK  P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEEHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of MS015318 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-16
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 75  RKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQAD 134
           RK  P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEEHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

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BLAST of MS015318 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 62  TPGRESKFDL--RRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 121
           +PG  +  D    R RK +P Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EA
Sbjct: 9   SPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEA 68

Query: 122 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEP 154
           H  G+ LVI+C    AE +C  L+  GL SSIEP
Sbjct: 69  HNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of MS015318 vs. ExPASy TrEMBL
Match: A0A6J1DBL1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018609 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.7e-85
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60
           MEIAICGKLALSPNHVFNP+PGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60

Query: 61  ATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRES+FDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of MS015318 vs. ExPASy TrEMBL
Match: A0A5A7STJ9 (ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00780 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 143/159 (89.94%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGD++ +C+GLC + GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRES+FD+RRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of MS015318 vs. ExPASy TrEMBL
Match: A0A1S3BG61 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489260 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 143/159 (89.94%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60
           MEIAICGKLA+SPNHVFNPKPGD++ +C+GLC + GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRES+FD+RRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of MS015318 vs. ExPASy TrEMBL
Match: A0A6J1HZX0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467734 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.3e-78
Identity = 147/160 (91.88%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGK-GGGLLERPVIE 60
           MEIAICGKLALSPNHVFNPKPGD++ VC+GLCS+L A++VKSATTAG+ GGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           KATPGRES+FDLRRSRKTTPPYRVILHNDDFN+REYVVQVLMKVIPGMTLDNAVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           H NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of MS015318 vs. ExPASy TrEMBL
Match: A0A0A0KWD9 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60
           MEIAI GKLALSPNHVFNPKPGD++ VC+GLC + GA++VKSA TAG+GGGLLERPVIEK
Sbjct: 1   MEIAIRGKLALSPNHVFNPKPGDRSSVCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           ATPGRES+FDLRRSRK TPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160
           YNGLSLVIICAQADAE HCMQLRGNGLLSSIEPASGGCC
Sbjct: 121 YNGLSLVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of MS015318 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 238.4 bits (607), Expect = 3.9e-63
Identity = 113/159 (71.07%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GDK+ V +G C +    +  S + A GKGGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRES+FDLR+S+K  PPYRVILHND+FNKREYVVQVLMKVIPGMT+DNAVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
           H NGL++VI+CAQADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of MS015318 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 170.6 bits (431), Expect = 9.9e-43
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIE 60
           ME AICG+LAL+P+ +FN K GDK+ V +G C +    +  S + A GKGGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEA 120
           K TPGRES+FDLR+S+K  PPYRVILHND+FNKREYVVQVLMK                 
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK----------------- 120

Query: 121 HYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC 159
                        ADAE+HCMQLRGNGLLSS+EP  GGC
Sbjct: 121 -------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of MS015318 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150471.1	7.5e-85	98.74	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica chara...	[more]
XP_038891525.1	1.8e-78	91.19	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
XP_008446565.1	2.4e-78	89.94	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_022968529.1	6.8e-78	91.88	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
KAG7013044.1	6.8e-78	90.57	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyr...	[more]

BLAST of MS015318 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	5.5e-62	71.07	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.5e-22	42.11	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	4.4e-19	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	2.0e-16	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	3.3e-14	43.62	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of MS015318 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBL1	3.7e-85	98.74	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica cha...	[more]
A0A5A7STJ9	1.1e-78	89.94	ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BG61	1.1e-78	89.94	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A6J1HZX0	3.3e-78	91.88	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A0A0KWD9	2.1e-77	90.57	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 S...	[more]

BLAST of MS015318 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	3.9e-63	71.07	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	9.9e-43	55.35	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 77..144 e-value: 8.8E-19 score: 67.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 75..153 e-value: 1.2E-21 score: 78.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 75..153
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 61..155 score: 15.019711
None	No IPR available	PANTHER	PTHR33473:SF15	BNAA07G24510D PROTEIN	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015318.1	MS015318.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis