MS015311 (gene) Bitter gourd (TR) v1

Overview


Name	MS015311
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small polypeptide DEVIL 4
Location	scaffold2: 2494225 .. 2494359 (-)
RNA-Seq Expression	MS015311
Synteny	MS015311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGATGAAGATGAGCGGTGCGACGACGAAGAGGAGGGTCTCGAGCCGAGGGCTGGGCGGGGTTGTGAGAGAGCAGAGGGCAAGGCTTTACATTATCAGACGCTGTGTCGTGATGCTTCTTTGTTGGCATGAC

mRNA sequence

TTGAAGATGAAGATGAGCGGTGCGACGACGAAGAGGAGGGTCTCGAGCCGAGGGCTGGGCGGGGTTGTGAGAGAGCAGAGGGCAAGGCTTTACATTATCAGACGCTGTGTCGTGATGCTTCTTTGTTGGCATGAC

Coding sequence (CDS)

TTGAAGATGAAGATGAGCGGTGCGACGACGAAGAGGAGGGTCTCGAGCCGAGGGCTGGGCGGGGTTGTGAGAGAGCAGAGGGCAAGGCTTTACATTATCAGACGCTGTGTCGTGATGCTTCTTTGTTGGCATGAC

Protein sequence

LKMKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD

Homology

[Close]

BLAST of MS015311 vs. NCBI nr
Match: XP_022150640.1 (uncharacterized protein LOC111018725 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 1.5e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 3  MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD
Sbjct: 1  MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 43

[Close]

BLAST of MS015311 vs. NCBI nr
Match: XP_028768613.1 (uncharacterized protein LOC114726206 [Prosopis alba])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 3  MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKM+ A++KRR+S+RGLGG +REQRARLYIIRRCVVMLLCWHD
Sbjct: 1  MKMASASSKRRLSNRGLGGALREQRARLYIIRRCVVMLLCWHD 43

[Close]

BLAST of MS015311 vs. NCBI nr
Match: XP_017970586.1 (PREDICTED: uncharacterized protein LOC108660746 [Theobroma cacao])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3  MKMSGAT---TKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKMS AT   +KRR+SSRGLGGV+REQRARLYIIRRCVVMLLCWHD
Sbjct: 1  MKMSSATVGASKRRLSSRGLGGVLREQRARLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS015311 vs. NCBI nr
Match: MBA0592954.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1  LKMKMSGATT----KRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          +KMKMS + T    KRR+SSRGLGGV+REQRA+LYIIRRCVVMLLCWHD
Sbjct: 26 VKMKMSSSATMGASKRRLSSRGLGGVLREQRAKLYIIRRCVVMLLCWHD 74

[Close]

BLAST of MS015311 vs. NCBI nr
Match: XP_038997183.1 (uncharacterized protein LOC120121989 [Hibiscus syriacus] >XP_039051777.1 uncharacterized protein LOC120193332 [Hibiscus syriacus])

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3  MKMSGAT---TKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKMS AT   +KRR+SSRGLGGV+REQRA+LYIIRRCVVMLLCWHD
Sbjct: 1  MKMSSATMGSSKRRLSSRGLGGVLREQRAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS015311 vs. ExPASy Swiss-Prot
Match: Q9SAF8 (Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.3e-12
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 3  MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKM G  +KRRVSS+GLG V++EQRA+LYIIRRCVVMLLCWHD
Sbjct: 1  MKMGG--SKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of MS015311 vs. ExPASy Swiss-Prot
Match: Q6X5T8 (Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.7e-11
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 10 TKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          TKR++ SRG+GGVVREQ+A+LYIIRRCVVMLLCWHD
Sbjct: 11 TKRKMWSRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS015311 vs. ExPASy Swiss-Prot
Match: Q6IM95 (Small polypeptide DEVIL 6 OS=Arabidopsis thaliana OX=3702 GN=DVL6 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-09
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 11 KRRV-SSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          KRRV SSRGLGGV+REQRA+LYII+RCVVMLLCW D
Sbjct: 5  KRRVSSSRGLGGVLREQRAKLYIIKRCVVMLLCWQD 40

[Close]

BLAST of MS015311 vs. ExPASy Swiss-Prot
Match: Q6X5U0 (Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-07
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 9  TTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          T K+   ++ LGG ++EQ+ RLYIIRRCVVML+CWHD
Sbjct: 4  TKKKTPCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

[Close]

BLAST of MS015311 vs. ExPASy Swiss-Prot
Match: Q6X5V0 (Small polypeptide DEVIL 1 OS=Arabidopsis thaliana OX=3702 GN=DVL1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.9e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 11 KRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          K+R  SR LG  ++EQ+ R+YIIRRC+VMLLC HD
Sbjct: 17 KKRSISRRLGKYMKEQKGRIYIIRRCMVMLLCSHD 51

[Close]

BLAST of MS015311 vs. ExPASy TrEMBL
Match: A0A6J1D923 (uncharacterized protein LOC111018725 OS=Momordica charantia OX=3673 GN=LOC111018725 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 3  MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD
Sbjct: 1  MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 43

[Close]

BLAST of MS015311 vs. ExPASy TrEMBL
Match: A0A7J8PUI7 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_009913 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1  LKMKMSGATT----KRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          +KMKMS + T    KRR+SSRGLGGV+REQRA+LYIIRRCVVMLLCWHD
Sbjct: 26 VKMKMSSSATMGASKRRLSSRGLGGVLREQRAKLYIIRRCVVMLLCWHD 74

[Close]

BLAST of MS015311 vs. ExPASy TrEMBL
Match: A0A6P8E3G7 (uncharacterized protein LOC116210277 OS=Punica granatum OX=22663 GN=LOC116210277 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 3  MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKMS + +KRR+SSRGLGG +REQRA+LYIIRRCVVMLLCWHD
Sbjct: 4  MKMSSSGSKRRLSSRGLGGALREQRAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS015311 vs. ExPASy TrEMBL
Match: A0A1U8AHJ4 (uncharacterized protein LOC104603042 OS=Nelumbo nucifera OX=4432 GN=LOC104603042 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 3  MKMSGAT---TKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKMS AT   +KRR+SSRGLGG++REQR RLYIIRRCV+MLLCWHD
Sbjct: 1  MKMSSATIGGSKRRLSSRGLGGILREQRGRLYIIRRCVIMLLCWHD 46

[Close]

BLAST of MS015311 vs. ExPASy TrEMBL
Match: A0A2I4EWC5 (uncharacterized protein LOC108993278 OS=Juglans regia OX=51240 GN=LOC108993278 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 3  MKMSGAT---TKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKMS AT   +KRR+S+RGLGGV+REQRA+LYIIRRCVVMLLCWHD
Sbjct: 1  MKMSSATIGGSKRRLSTRGLGGVLREQRAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS015311 vs. TAIR 10
Match: AT1G13245.1 (ROTUNDIFOLIA like 17 )

HSP 1 Score: 70.1 bits (170), Expect = 5.2e-13
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 3  MKMSGATTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          MKM G  +KRRVSS+GLG V++EQRA+LYIIRRCVVMLLCWHD
Sbjct: 1  MKMGG--SKRRVSSKGLGAVLKEQRAKLYIIRRCVVMLLCWHD 41

[Close]

BLAST of MS015311 vs. TAIR 10
Match: AT1G68825.1 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 67.4 bits (163), Expect = 3.4e-12
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 10 TKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          TKR++ SRG+GGVVREQ+A+LYIIRRCVVMLLCWHD
Sbjct: 11 TKRKMWSRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS015311 vs. TAIR 10
Match: AT1G68825.2 (ROTUNDIFOLIA like 15 )

HSP 1 Score: 67.4 bits (163), Expect = 3.4e-12
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 10 TKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          TKR++ SRG+GGVVREQ+A+LYIIRRCVVMLLCWHD
Sbjct: 11 TKRKMWSRGVGGVVREQKAKLYIIRRCVVMLLCWHD 46

[Close]

BLAST of MS015311 vs. TAIR 10
Match: AT3G25717.1 (ROTUNDIFOLIA like 16 )

HSP 1 Score: 62.8 bits (151), Expect = 8.3e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 11 KRRV-SSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          KRRV SSRGLGGV+REQRA+LYII+RCVVMLLCW D
Sbjct: 5  KRRVSSSRGLGGVLREQRAKLYIIKRCVVMLLCWQD 40

[Close]

BLAST of MS015311 vs. TAIR 10
Match: AT1G67265.1 (ROTUNDIFOLIA like 21 )

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-08
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 9  TTKRRVSSRGLGGVVREQRARLYIIRRCVVMLLCWHD 46
          T K+   ++ LGG ++EQ+ RLYIIRRCVVML+CWHD
Sbjct: 4  TKKKTPCNKKLGGYLKEQKGRLYIIRRCVVMLICWHD 40

The following BLAST results are available for this feature:

BLAST of MS015311 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150640.1	1.5e-14	100.00	uncharacterized protein LOC111018725 [Momordica charantia]	[more]
XP_028768613.1	4.5e-11	81.40	uncharacterized protein LOC114726206 [Prosopis alba]	[more]
XP_017970586.1	4.5e-11	84.78	PREDICTED: uncharacterized protein LOC108660746 [Theobroma cacao]	[more]
MBA0592954.1	7.8e-11	77.55	hypothetical protein [Gossypium raimondii]	[more]
XP_038997183.1	1.0e-10	82.61	uncharacterized protein LOC120121989 [Hibiscus syriacus] >XP_039051777.1 unchara...	[more]

BLAST of MS015311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAF8	7.3e-12	79.07	Small polypeptide DEVIL 4 OS=Arabidopsis thaliana OX=3702 GN=DVL4 PE=2 SV=1	[more]
Q6X5T8	4.7e-11	83.33	Small polypeptide DEVIL 5 OS=Arabidopsis thaliana OX=3702 GN=DVL5 PE=2 SV=1	[more]
Q6IM95	1.2e-09	86.11	Small polypeptide DEVIL 6 OS=Arabidopsis thaliana OX=3702 GN=DVL6 PE=3 SV=1	[more]
Q6X5U0	3.2e-07	62.16	Small polypeptide DEVIL 3 OS=Arabidopsis thaliana OX=3702 GN=DVL3 PE=2 SV=1	[more]
Q6X5V0	3.9e-05	62.86	Small polypeptide DEVIL 1 OS=Arabidopsis thaliana OX=3702 GN=DVL1 PE=1 SV=1	[more]

BLAST of MS015311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D923	7.3e-15	100.00	uncharacterized protein LOC111018725 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A7J8PUI7	3.8e-11	77.55	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_009913 PE=4 SV=...	[more]
A0A6P8E3G7	4.9e-11	81.40	uncharacterized protein LOC116210277 OS=Punica granatum OX=22663 GN=LOC116210277...	[more]
A0A1U8AHJ4	1.1e-10	78.26	uncharacterized protein LOC104603042 OS=Nelumbo nucifera OX=4432 GN=LOC104603042...	[more]
A0A2I4EWC5	1.1e-10	80.43	uncharacterized protein LOC108993278 OS=Juglans regia OX=51240 GN=LOC108993278 P...	[more]

BLAST of MS015311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13245.1	5.2e-13	79.07	ROTUNDIFOLIA like 17	[more]
AT1G68825.1	3.4e-12	83.33	ROTUNDIFOLIA like 15	[more]
AT1G68825.2	3.4e-12	83.33	ROTUNDIFOLIA like 15	[more]
AT3G25717.1	8.3e-11	86.11	ROTUNDIFOLIA like 16	[more]
AT1G67265.1	2.3e-08	62.16	ROTUNDIFOLIA like 21	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 24..42 e-value: 1.7E-12 score: 46.8
None	No IPR available	PANTHER	PTHR33102:SF64	DVL5-RELATED	coord: 2..45
None	No IPR available	PANTHER	PTHR33102	DVL19-RELATED-RELATED	coord: 2..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015311.1	MS015311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation