MS015259 (gene) Bitter gourd (TR) v1

Overview
NameMS015259
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold2: 2112072 .. 2112221 (-)
RNA-Seq ExpressionMS015259
SyntenyMS015259
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGGCAAGAAAGAGAATTTGTATTGGTCAAGTTTAAAGTCATTCATTTATAGCTTACTTGGCTGTAATGGTGGAAATGCAGAGGCACCTCCATCTGGGCCAGAGGCAGCCATGGTAGCTGCAGCAAAGCATTTCTCTTCTGCTCACAAG

mRNA sequence

GGGGGCAAGAAAGAGAATTTGTATTGGTCAAGTTTAAAGTCATTCATTTATAGCTTACTTGGCTGTAATGGTGGAAATGCAGAGGCACCTCCATCTGGGCCAGAGGCAGCCATGGTAGCTGCAGCAAAGCATTTCTCTTCTGCTCACAAG

Coding sequence (CDS)

GGGGGCAAGAAAGAGAATTTGTATTGGTCAAGTTTAAAGTCATTCATTTATAGCTTACTTGGCTGTAATGGTGGAAATGCAGAGGCACCTCCATCTGGGCCAGAGGCAGCCATGGTAGCTGCAGCAAAGCATTTCTCTTCTGCTCACAAG

Protein sequence

GGKKENLYWSSLKSFIYSLLGCNGGNAEAPPSGPEAAMVAAAKHFSSAHK
Homology
[Close]
BLAST of MS015259 vs. NCBI nr
Match: KGN51999.1 (hypothetical protein Csa_008139 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 9.5e-10
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 1  GGKKENLYWSSLKSFIYSLLGCNGGNAEA-----PPSGPEAAMVAAAKHFSSAHK 51
          G +KENL WS +KSFI  LLG N GNA+A      PSGPEAAMVAAAKHFSSAHK
Sbjct: 2  GDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHK 56

[Close]
BLAST of MS015259 vs. NCBI nr
Match: KAG6574028.1 (hypothetical protein SDJN03_27915, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 6  NLYWSSLKSFIYSLLGCNGGNAEA-----------PPSGPEAAMVAAAKHFSSAHK 51
          NL WS+LKSFIY LLG NGG+ EA           PP+GPEAAMVAAAKHFSSAHK
Sbjct: 2  NLIWSTLKSFIYCLLGFNGGSPEAAMAAAAAAAPSPPTGPEAAMVAAAKHFSSAHK 57

[Close]
BLAST of MS015259 vs. ExPASy TrEMBL
Match: A0A0A0KT12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 0 

Query: 1  GGKKENLYWSSLKSFIYSLLGCNGGNAEA-----PPSGPEAAMVAAAKHFSSAHK 51
          G +KENL WS +KSFI  LLG N GNA+A      PSGPEAAMVAAAKHFSSAHK
Sbjct: 2  GDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHK 56

The following BLAST results are available for this feature:
BLAST of MS015259 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51999.19.5e-1070.91hypothetical protein Csa_008139 [Cucumis sativus][more]
KAG6574028.12.8e-0967.86hypothetical protein SDJN03_27915, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MS015259 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS015259 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT124.6e-1070.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1[more]
BLAST of MS015259 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015259.1MS015259.1mRNA