MS015256 (gene) Bitter gourd (TR) v1

Overview
NameMS015256
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold2: 2100571 .. 2102060 (+)
RNA-Seq ExpressionMS015256
SyntenyMS015256
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGATAGTCATGGCCTCACTGTGCTGTGTTTCTCTCTTAATTCTTTTGATACCTTATGCTTCCTCCCATGCTCTGGAGCAGTCCTTCCACTTGCAAGGTGTATATCCTTCTCTCTTTTTCTTCTTCTTCTTTTTTCTCTCTTTGAGAATAATGGTATAATATTTGTGATCTTGCAGCAACAGAAGCAGTGCGTTTTCGTCCGACGAGGAAGTTTAGACTGATGGAAGAGGCGGGAGCGAGTGTTAAGGTGTGTTTGAAAATAGTTTTAAAATAAGCGATTTTATCTTAAGTACTTTTATTATAAATTCTTTAGTAACTTTCATGTTTATATGTTTCGTTGTACACGGTTCTTGAGTGCTTCTCTAACAATACAAGTACTCTACTACAGCACAACTAAGTGCTTTTAACTTTTTCTAAAAGCATTAATAAATCATTTTCAAACATGATGAATTTGAGTTAGAAGAGCGTTGGCCATATGACAAAACATATCAAAAGCACTCCCAAATATAGTTTTGCACATATCAAAATCATTTCCAAACACAGCGTTCCAACCAATTTCACCATTGTTTTCTCTCTTTTTCTCTCTTTTTCTCTGTGCCTTTGACATTGTGATCACTGATGATTTTTCTGGAATCAGGTTAAAGCACATGGACCCCCAGTTCCCATACAAAACGATAACCACGAGGACAATGTTTCAGGTGATTTCTATGTTCATTTTCAAATAAAATCCAAAAATATGCAAGTTTTTTAGTTGCTATTTTCTGTAAATAACTCAGTCCTGTCATTTCTACAACCAGGCCATTGGATAAGTAGTCTGGTTATGGTTTCAAGTTTTAACTAAAAACTGCAACAAGTTTTCTTCCTAGAAGATGGAAAACTTGAGGCTTTGCCATATTTGAATAACACCAAAGTAAAAAAACAAAAACTCACTATTTTCTTTTCACTTTTTAGATATACACTGCAGTTTCAGATACTTACCCTGCCATTATTTTTCTCTCAAATCACCTTCAATTATTCATTCCCCTTATAGCTACTGTCCATTAAAGATATCATTGTGACTCTCCTTCAATTCCTGCCTAAAATTTTTTCCTTTTATATTTATTGGTTTAAAATTTTAGTGGGTGAGTTTTTATTCTACGACGTGTGTTAGATATTTCAAGTCATGATAACAGTTAAGTTTCATCGTATAGTTTAAGCATGGATAACAATTGATATTGAATACAAATTAACGTCTTTGTTTACAATAATGATAATATATTTTTTAATAGATTTATTTGGAATATGAGTTTTATGAAAAAGGGGAACTAAAACAACTGCAATTTACAGGCCAGCCTTATAAAAGGGAGCAAAAGGGAATGAACTTGAGCAGAAGGAAGGGGAGAAAGTGGCTGGATGTAGCCGACATGTCGTCGCGTTTTTTCACAATGGATTACGTTCACACGAGACGACGTCGTCCTGTACATAACATGTCGCGCCAGCGTCCT

mRNA sequence

ATGGGGTTGATAGTCATGGCCTCACTGTGCTGTGTTTCTCTCTTAATTCTTTTGATACCTTATGCTTCCTCCCATGCTCTGGAGCAGTCCTTCCACTTGCAAGGTGTATATCCTTCTCTCTTTTTCTTCTTCTTCTTTTTTCTCTCTTTGAGAATAATGATTTATTTGGAATATGAGTTTTATGAAAAAGGGGAACTAAAACAACTGCAATTTACAGGCCAGCCTTATAAAAGGGAGCAAAAGGGAATGAACTTGAGCAGAAGGAAGGGGAGAAAGTGGCTGGATGTAGCCGACATGTCGTCGCGTTTTTTCACAATGGATTACGTTCACACGAGACGACGTCGTCCTGTACATAACATGTCGCGCCAGCGTCCT

Coding sequence (CDS)

ATGGGGTTGATAGTCATGGCCTCACTGTGCTGTGTTTCTCTCTTAATTCTTTTGATACCTTATGCTTCCTCCCATGCTCTGGAGCAGTCCTTCCACTTGCAAGGTGTATATCCTTCTCTCTTTTTCTTCTTCTTCTTTTTTCTCTCTTTGAGAATAATGATTTATTTGGAATATGAGTTTTATGAAAAAGGGGAACTAAAACAACTGCAATTTACAGGCCAGCCTTATAAAAGGGAGCAAAAGGGAATGAACTTGAGCAGAAGGAAGGGGAGAAAGTGGCTGGATGTAGCCGACATGTCGTCGCGTTTTTTCACAATGGATTACGTTCACACGAGACGACGTCGTCCTGTACATAACATGTCGCGCCAGCGTCCT

Protein sequence

MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQGVYPSLFFFFFFFLSLRIMIYLEYEFYEKGELKQLQFTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHTRRRRPVHNMSRQRP
Homology
[Close]
BLAST of MS015256 vs. NCBI nr
Match: XP_022149067.1 (uncharacterized protein LOC111017571 [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 4.5e-32
Identity = 93/138 (67.39%), Postives = 97/138 (70.29%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQGVYPSLFFFFFFFLSLRIMIYLEYEF 60
           MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQ      F     F   R+M       
Sbjct: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQATEAVRFRPTRKF---RLM------- 60

Query: 61  YEKGELK-------------QLQFTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMD 120
            E G +K             +   +GQPYKREQKGMNLSRRKGRKWLDV DMSSRFFTMD
Sbjct: 61  EEAGAVKAHGSPVPIQNDNHEDNVSGQPYKREQKGMNLSRRKGRKWLDVDDMSSRFFTMD 120

Query: 121 YVHTRRRRPVHNMSRQRP 126
           YVHTRRRRPVHNMSRQRP
Sbjct: 121 YVHTRRRRPVHNMSRQRP 128

[Close]
BLAST of MS015256 vs. NCBI nr
Match: XP_022977309.1 (uncharacterized protein LOC111477668 [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 69/131 (52.67%), Postives = 84/131 (64.12%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQ---GVYPSLFFFFFFFLSLRIMIYLE 60
           MGLI MA LCCVSLLIL +P+ASSHAL+QS  LQ    V+         F  L     +E
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEAKVVE 60

Query: 61  YEFYEKGELKQLQ---FTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHTRRR 120
              ++  + +  Q    +GQPYKRE+     ++ KGRKW +VADMSSRF TMDY H +RR
Sbjct: 61  AHGFQASKQEDEQKENVSGQPYKREE-----NKGKGRKWGNVADMSSRFLTMDYAHIKRR 120

Query: 121 RPVHNMSRQRP 126
           RPVHNMSRQRP
Sbjct: 121 RPVHNMSRQRP 126

[Close]
BLAST of MS015256 vs. NCBI nr
Match: XP_022956442.1 (uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothetical protein SDJN02_06188 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 71/131 (54.20%), Postives = 86/131 (65.65%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQGV----YPSLFFFFFFFLSLRIMIYL 60
           MGLI+MA LCCVSLLIL +P+ASSHAL+QS  LQ       P L     F +     +  
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60

Query: 61  EYEFY-EKGELKQLQ-FTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHTRRR 120
            + F   K E +Q +  +GQ YKRE+     ++ KGRKW +VADMSSRFFTMDY H +RR
Sbjct: 61  AHGFQASKQEDEQKETVSGQAYKREE-----NKGKGRKWGNVADMSSRFFTMDYAHIKRR 120

Query: 121 RPVHNMSRQRP 126
           RPVHNMSRQRP
Sbjct: 121 RPVHNMSRQRP 126

[Close]
BLAST of MS015256 vs. NCBI nr
Match: XP_023525366.1 (uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-18
Identity = 70/133 (52.63%), Postives = 86/133 (64.66%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQGV-----YPSLFFFFFFFLSLRIMIY 60
           MGLI+MA LCCVSLLIL +P+ASSHAL+QS  LQ        P L     F +     + 
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60

Query: 61  LEYEFY---EKGELKQLQFTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHTR 120
             + F    ++ ELK+   +GQ YKRE+     ++ KGRKW +V DMSSRFFTMDY H +
Sbjct: 61  EAHGFQASKQEDELKE-NVSGQAYKREE-----NKGKGRKWGNVDDMSSRFFTMDYAHIK 120

Query: 121 RRRPVHNMSRQRP 126
           RRRPVHNMSRQRP
Sbjct: 121 RRRPVHNMSRQRP 127

[Close]
BLAST of MS015256 vs. NCBI nr
Match: KAA0034486.1 (putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 putative root meristem growth factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 67/131 (51.15%), Postives = 80/131 (61.07%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQ---GVYPSLFFFFFFFLSLRIMIYLE 60
           MGLIVMA LCCVS+LILLIP ASSHAL+QS  LQ    V+         F  L+    L+
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  YEFYEKGELKQLQFTGQPYK---REQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHTRRR 120
                +G     Q           E+KGM L++RKGRK ++VADMSS+ FTMDY H +RR
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSGEEEKGMKLNKRKGRKGVNVADMSSQIFTMDYAHLKRR 120

Query: 121 RPVHNMSRQRP 126
           RPVHNMS  RP
Sbjct: 121 RPVHNMSLNRP 131

[Close]
BLAST of MS015256 vs. ExPASy TrEMBL
Match: A0A6J1D6T9 (uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017571 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.2e-32
Identity = 93/138 (67.39%), Postives = 97/138 (70.29%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQGVYPSLFFFFFFFLSLRIMIYLEYEF 60
           MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQ      F     F   R+M       
Sbjct: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQATEAVRFRPTRKF---RLM------- 60

Query: 61  YEKGELK-------------QLQFTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMD 120
            E G +K             +   +GQPYKREQKGMNLSRRKGRKWLDV DMSSRFFTMD
Sbjct: 61  EEAGAVKAHGSPVPIQNDNHEDNVSGQPYKREQKGMNLSRRKGRKWLDVDDMSSRFFTMD 120

Query: 121 YVHTRRRRPVHNMSRQRP 126
           YVHTRRRRPVHNMSRQRP
Sbjct: 121 YVHTRRRRPVHNMSRQRP 128

[Close]
BLAST of MS015256 vs. ExPASy TrEMBL
Match: A0A6J1IR14 (uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.0e-19
Identity = 69/131 (52.67%), Postives = 84/131 (64.12%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQ---GVYPSLFFFFFFFLSLRIMIYLE 60
           MGLI MA LCCVSLLIL +P+ASSHAL+QS  LQ    V+         F  L     +E
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEAKVVE 60

Query: 61  YEFYEKGELKQLQ---FTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHTRRR 120
              ++  + +  Q    +GQPYKRE+     ++ KGRKW +VADMSSRF TMDY H +RR
Sbjct: 61  AHGFQASKQEDEQKENVSGQPYKREE-----NKGKGRKWGNVADMSSRFLTMDYAHIKRR 120

Query: 121 RPVHNMSRQRP 126
           RPVHNMSRQRP
Sbjct: 121 RPVHNMSRQRP 126

[Close]
BLAST of MS015256 vs. ExPASy TrEMBL
Match: A0A6J1GWC1 (uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC111458171 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.0e-19
Identity = 71/131 (54.20%), Postives = 86/131 (65.65%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQGV----YPSLFFFFFFFLSLRIMIYL 60
           MGLI+MA LCCVSLLIL +P+ASSHAL+QS  LQ       P L     F +     +  
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60

Query: 61  EYEFY-EKGELKQLQ-FTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHTRRR 120
            + F   K E +Q +  +GQ YKRE+     ++ KGRKW +VADMSSRFFTMDY H +RR
Sbjct: 61  AHGFQASKQEDEQKETVSGQAYKREE-----NKGKGRKWGNVADMSSRFFTMDYAHIKRR 120

Query: 121 RPVHNMSRQRP 126
           RPVHNMSRQRP
Sbjct: 121 RPVHNMSRQRP 126

[Close]
BLAST of MS015256 vs. ExPASy TrEMBL
Match: A0A0A0KWA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.7e-17
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQ---GVYPSLFF---FFFFFLSLRIMI 60
           MGLIVMA LCCVS+L+LLIP ASSHAL+QS  LQ   GV+  L     F     + R+  
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSPLVLGRKFKMLEEAARVDK 60

Query: 61  YLEYEFYEKGELK---QLQFTGQPYKREQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHT 120
            +E + ++  + K   +   +GQ    E++G  L++ KGRKW+ VADMSS+ FTMDY H 
Sbjct: 61  KVEAQGFQVAKQKDNHKENVSGQ----EEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHL 120

Query: 121 RRRRPVHNMSRQRP 126
           +RRRPVHNMS +RP
Sbjct: 121 KRRRPVHNMSLKRP 130

[Close]
BLAST of MS015256 vs. ExPASy TrEMBL
Match: A0A5D3CCI7 (Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00260 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-16
Identity = 67/131 (51.15%), Postives = 80/131 (61.07%), Query Frame = 0 

Query: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQ---GVYPSLFFFFFFFLSLRIMIYLE 60
           MGLIVMA LCCVS+LILLIP ASSHAL+QS  LQ    V+         F  L+    L+
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  YEFYEKGELKQLQFTGQPYK---REQKGMNLSRRKGRKWLDVADMSSRFFTMDYVHTRRR 120
                +G     Q           E+KGM L++RKGRK ++VADMSS+ FTMDY H +RR
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSGEEEKGMKLNKRKGRKGVNVADMSSQIFTMDYAHLKRR 120

Query: 121 RPVHNMSRQRP 126
           RPVHNMS  RP
Sbjct: 121 RPVHNMSLNRP 131

The following BLAST results are available for this feature:
BLAST of MS015256 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149067.14.5e-3267.39uncharacterized protein LOC111017571 [Momordica charantia][more]
XP_022977309.11.6e-1852.67uncharacterized protein LOC111477668 [Cucurbita maxima][more]
XP_022956442.11.6e-1854.20uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothet... [more]
XP_023525366.14.8e-1852.63uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAA0034486.15.9e-1651.15putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 pu... [more]
BLAST of MS015256 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS015256 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D6T92.2e-3267.39uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1IR148.0e-1952.67uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668... [more]
A0A6J1GWC18.0e-1954.20uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC1114581... [more]
A0A0A0KWA15.7e-1750.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1[more]
A0A5D3CCI72.8e-1651.15Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
BLAST of MS015256 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015256.1MS015256.1mRNA