MS015201 (gene) Bitter gourd (TR) v1

Overview


Name	MS015201
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L32, chloroplastic
Location	scaffold2: 1753206 .. 1754040 (+)
RNA-Seq Expression	MS015201
Synteny	MS015201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGAGGATTATGAGGGCGGTTGAGGGTCAGACATGTTCGATGCTAGGGCTCAAGGCGATGGCTAATGTTTTACCCCATTTTTCGCCGTTATCTGGGATCATGGACCGAAAGGATTCTACGCCGCCGCTGGTTCTGCCGGAGTTTAACCATGAATCTGATAGCGATAGGATCGGCAACTGCAGTAGTGTGGGATTTGGCTTCCCTAGTTTATCTTTTTCCGGGTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTATTGGATTCCCCCGTCCTTTTTTTTTTTTTTCCAAAGCATCAAACACGTTGAAGGTACTATTCCTATAATAGAATCTTAAACAATTTGAACCTAGTGGAAAATGTAGAACCTTAAAAATGGACATTGCTTATATTTGTGGGATATGTAAGCTGTTATTCGATTGTGCTTTAAGAGAATTGTTCGGAACTTTATTTTTGTTCTGTTTCTGAGGTCAGTGCTTGATATCGTATGGTACTTGGCAGCAGTGATTATTTCTATTCTAATATGATAAGCACTGTGACGATTATGTGGTTTTAGAGTCCATAGATTTTCTTTTGGACTTGAAATTCTTGTAGCTCATCAATGTGTATATCTGAATGTATGACAATATTTACATGTTTATTTGAAACATTAGTCTAGGGCTACGCTGGGTTTTCAGACTTCCTATTCTAAACTCGTTATTGTCTGGATTTTATTGGAAAATTTGAGGAAGCAATTCGTGGCCAATGTTTTGCAGGTTTCTCCACATAAAAGAGGCATAAGAAATGGCCCAAAAGCTCTAAAACCTATTCCAGTTATAATTCGGTGCAAG

mRNA sequence

ATGGCGTTGAGGATTATGAGGGCGGTTGAGGGTCAGACATGTTCGATGCTAGGGCTCAAGGCGATGGCTAATGTTTTACCCCATTTTTCGCCGTTATCTGGGATCATGGACCGAAAGGATTCTACGCCGCCGCTGGTTCTGCCGGAGTTTAACCATGAATCTGATAGCGATAGGATCGGCAACTGCAGTAGTGTGGGATTTGGCTTCCCTAGTTTATCTTTTTCCGGGTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGAGGCATAAGAAATGGCCCAAAAGCTCTAAAACCTATTCCAGTTATAATTCGGTGCAAG

Coding sequence (CDS)

ATGGCGTTGAGGATTATGAGGGCGGTTGAGGGTCAGACATGTTCGATGCTAGGGCTCAAGGCGATGGCTAATGTTTTACCCCATTTTTCGCCGTTATCTGGGATCATGGACCGAAAGGATTCTACGCCGCCGCTGGTTCTGCCGGAGTTTAACCATGAATCTGATAGCGATAGGATCGGCAACTGCAGTAGTGTGGGATTTGGCTTCCCTAGTTTATCTTTTTCCGGGTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGAGGCATAAGAAATGGCCCAAAAGCTCTAAAACCTATTCCAGTTATAATTCGGTGCAAG

Protein sequence

MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK

Homology

[Close]

BLAST of MS015201 vs. NCBI nr
Match: XP_022151273.1 (uncharacterized protein LOC111019232 [Momordica charantia])

HSP 1 Score: 227.6 bits (579), Expect = 5.2e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG
Sbjct: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK
Sbjct: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 112

[Close]

BLAST of MS015201 vs. NCBI nr
Match: XP_023541204.1 (uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 100/112 (89.29%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRI+RAVEGQT SM GLKAM  VLPH SP+SGIMDRKDS PPLVLPEFNHESD DRI 
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMTKVLPHSSPISGIMDRKDSAPPLVLPEFNHESDRDRIN 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCK
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCK 112

[Close]

BLAST of MS015201 vs. NCBI nr
Match: XP_022968104.1 (uncharacterized protein LOC111467436 [Cucurbita maxima])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 100/112 (89.29%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRI+RAVEGQT SM GLKAMA VLPH SP+SGIMD KDS PPLVLPEFNHESD D I 
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMAKVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCS VGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 112

[Close]

BLAST of MS015201 vs. NCBI nr
Match: KAG6574067.1 (hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 99/112 (88.39%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRI+RAVEGQT SM GLKAM  VLPH SP+SGIMDRKDS PPLVLPEFNHESD D I 
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMTKVLPHSSPISGIMDRKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCK
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCK 112

[Close]

BLAST of MS015201 vs. NCBI nr
Match: XP_022945635.1 (uncharacterized protein LOC111449817 [Cucurbita moschata])

HSP 1 Score: 197.6 bits (501), Expect = 5.7e-47
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRI+RAVEGQT SM GLKAMANVLPH SP++GI+ RKDS PPLVLPEFNHESD D I 
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMANVLPHSSPITGIIYRKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCK
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCK 112

[Close]

BLAST of MS015201 vs. ExPASy TrEMBL
Match: A0A6J1DBR3 (50S ribosomal protein L32, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019232 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG
Sbjct: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK
Sbjct: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 112

[Close]

BLAST of MS015201 vs. ExPASy TrEMBL
Match: A0A6J1HYN6 (50S ribosomal protein L32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467436 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 100/112 (89.29%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRI+RAVEGQT SM GLKAMA VLPH SP+SGIMD KDS PPLVLPEFNHESD D I 
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMAKVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCS VGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 112

[Close]

BLAST of MS015201 vs. ExPASy TrEMBL
Match: A0A6J1G1I2 (50S ribosomal protein L32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449817 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.8e-47
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRI+RAVEGQT SM GLKAMANVLPH SP++GI+ RKDS PPLVLPEFNHESD D I 
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMANVLPHSSPITGIIYRKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCK
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCK 112

[Close]

BLAST of MS015201 vs. ExPASy TrEMBL
Match: A0A0A0KQP7 (50S ribosomal protein L32, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G606360 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.6e-42
Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRIMRA+EGQ  SMLGLKAMA  LPH SP+SG+M  KDS PPLVLPEFN E D D+  
Sbjct: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCS VGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PKALKPIPVI+RCK
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCK 112

[Close]

BLAST of MS015201 vs. ExPASy TrEMBL
Match: A0A5A7SYB6 (50S ribosomal protein L32, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00190 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.7e-41
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60
           MALRIMRA+EGQT SMLGLKAMA  LPH S   G+M  KDS PPLVLPEFN ESD DRI 
Sbjct: 1   MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRIN 60

Query: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           NCS VGFGFPSL FSGSMELMAVPK+KVSPHKR IRN PKALKPIPVIIRCK
Sbjct: 61  NCSIVGFGFPSLYFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCK 110

[Close]

BLAST of MS015201 vs. TAIR 10
Match: AT1G26740.1 (Ribosomal L32p protein family )

HSP 1 Score: 117.1 bits (292), Expect = 9.2e-27
Identity = 61/114 (53.51%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 1   MALRI--MRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDR 60
           MALR+  ++    ++C +L  +++++V    SPL+G  DR  S PPLVLPEF  + +   
Sbjct: 1   MALRLTSLKRAAVESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEF--DQNQPG 60

Query: 61  IGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           +    S GFG PS +F+GSMELMAVPK+K+S HKRGIRNGPKALKP+PVIIRC+
Sbjct: 61  LIEEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCR 112

[Close]

BLAST of MS015201 vs. TAIR 10
Match: AT1G69485.1 (Ribosomal L32p protein family )

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 78  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK 113
           MELMAVPK+K+S HKRGIRNGPKA KP PVIIRC+
Sbjct: 1   MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCR 35

The following BLAST results are available for this feature:

BLAST of MS015201 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151273.1	5.2e-56	100.00	uncharacterized protein LOC111019232 [Momordica charantia]	[more]
XP_023541204.1	1.8e-48	89.29	uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]	[more]
XP_022968104.1	5.2e-48	89.29	uncharacterized protein LOC111467436 [Cucurbita maxima]	[more]
KAG6574067.1	1.2e-47	88.39	hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945635.1	5.7e-47	87.50	uncharacterized protein LOC111449817 [Cucurbita moschata]	[more]

BLAST of MS015201 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBR3	2.5e-56	100.00	50S ribosomal protein L32, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1HYN6	2.5e-48	89.29	50S ribosomal protein L32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1G1I2	2.8e-47	87.50	50S ribosomal protein L32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0KQP7	4.6e-42	80.36	50S ribosomal protein L32, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G606...	[more]
A0A5A7SYB6	8.7e-41	82.14	50S ribosomal protein L32, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MS015201 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26740.1	9.2e-27	53.51	Ribosomal L32p protein family	[more]
AT1G69485.1	2.4e-11	82.86	Ribosomal L32p protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21026:SF5	BNACNNG33200D PROTEIN	coord: 3..112
None	No IPR available	PANTHER	PTHR21026	39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL	coord: 3..112
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 80..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015201.1	MS015201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation