MS015185 (gene) Bitter gourd (TR) v1

Overview
NameMS015185
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase
Locationscaffold2: 1675420 .. 1675620 (+)
RNA-Seq ExpressionMS015185
SyntenyMS015185
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCCGGCTTCCGAATCATCGATCAAAGCCATGCCCACTGCTCACATGAATCAACAAATTGAATGTGTAATTTGTTTGGAGGAGATGGAAGTCGGTGGCCTGATCAAACAAATGCCCTGCAACCATAAATTCCATTCCAATTGCATAGGGAAGTGGCTGGAGCTACGTGATACCTTCCCCGTTTGTAGATATCAGATGCCA

mRNA sequence

CCCCCGGCTTCCGAATCATCGATCAAAGCCATGCCCACTGCTCACATGAATCAACAAATTGAATGTGTAATTTGTTTGGAGGAGATGGAAGTCGGTGGCCTGATCAAACAAATGCCCTGCAACCATAAATTCCATTCCAATTGCATAGGGAAGTGGCTGGAGCTACGTGATACCTTCCCCGTTTGTAGATATCAGATGCCA

Coding sequence (CDS)

CCCCCGGCTTCCGAATCATCGATCAAAGCCATGCCCACTGCTCACATGAATCAACAAATTGAATGTGTAATTTGTTTGGAGGAGATGGAAGTCGGTGGCCTGATCAAACAAATGCCCTGCAACCATAAATTCCATTCCAATTGCATAGGGAAGTGGCTGGAGCTACGTGATACCTTCCCCGTTTGTAGATATCAGATGCCA

Protein sequence

PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFPVCRYQMP
Homology
BLAST of MS015185 vs. NCBI nr
Match: XP_038891708.1 (E3 ubiquitin-protein ligase MPSR1-like [Benincasa hispida])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SIKAMP+  +++  ECVICLEE+EVGGL KQMPCNHKFH +CI KWLEL  + P
Sbjct: 78  PPASKASIKAMPSVPVSELTECVICLEEIEVGGLSKQMPCNHKFHGDCIQKWLELHGSCP 137

Query: 61  VCRYQMP 68
           VCRYQMP
Sbjct: 138 VCRYQMP 144

BLAST of MS015185 vs. NCBI nr
Match: KAG7013138.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SI AMP+ H+++Q +CVICL+E+EVGGL K+MPCNHKFH +CI KWLEL  + P
Sbjct: 81  PPASKASIIAMPSVHVSEQTQCVICLDEIEVGGLAKEMPCNHKFHGDCIEKWLELHGSCP 140

Query: 61  VCRYQMP 68
           VCRY+MP
Sbjct: 141 VCRYEMP 147

BLAST of MS015185 vs. NCBI nr
Match: KAG6574079.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SI AMP+ H+++Q +CVICL+E+EVGGL K+MPCNHKFH +CI KWLEL  + P
Sbjct: 81  PPASKASIIAMPSVHVSEQTQCVICLDEIEVGGLAKEMPCNHKFHGDCIEKWLELHGSCP 140

Query: 61  VCRYQMP 68
           VCRY+MP
Sbjct: 141 VCRYEMP 147

BLAST of MS015185 vs. NCBI nr
Match: XP_022945451.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SI AMP+ H+++Q +CVICL+E+EVGGL K+MPCNHKFH +CI KWLEL  + P
Sbjct: 81  PPASKASIIAMPSVHVSEQTQCVICLDEIEVGGLAKEMPCNHKFHGDCIEKWLELHGSCP 140

Query: 61  VCRYQMP 68
           VCRY+MP
Sbjct: 141 VCRYEMP 147

BLAST of MS015185 vs. NCBI nr
Match: XP_008446365.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0034425.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK17709.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-21
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SIKAMP+  +++  ECVICL+E+EVGGL KQMPCNHKFH  CI KWLEL  + P
Sbjct: 78  PPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMPCNHKFHGECIQKWLELHGSCP 137

Query: 61  VCRYQMP 68
           VCRYQMP
Sbjct: 138 VCRYQMP 144

BLAST of MS015185 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.9e-18
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPA + +++A+PT  + + + C +CL+++EVG   KQMPC HKFHS+CI  WLEL  + P
Sbjct: 178 PPAKKEAVEALPTVKIEEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCP 237

Query: 61  VCRYQMP 68
           VCR+++P
Sbjct: 238 VCRFELP 244

BLAST of MS015185 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-15
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQ-QIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTF 60
           PPAS++SI AMP   ++  + ECVICLEE +    +K+MPC H+FH  CI KWL    + 
Sbjct: 91  PPASKASIDAMPIVEIDGCEGECVICLEEWKSEETVKEMPCKHRFHGGCIEKWLGFHGSC 150

Query: 61  PVCRYQMP 68
           PVCRY+MP
Sbjct: 151 PVCRYEMP 158

BLAST of MS015185 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.7e-15
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQI------ECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLE 60
           PPAS+S+I A+PT  + + +      +C +C++E E G  +KQMPC H FH +C+  WLE
Sbjct: 189 PPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLE 248

Query: 61  LRDTFPVCRYQMP 68
           L ++ PVCR+++P
Sbjct: 249 LHNSCPVCRFELP 261

BLAST of MS015185 vs. ExPASy Swiss-Prot
Match: Q7T0Q3 (E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis OX=8355 GN=rnf126-a PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.9e-14
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 1   PPASESSIKAMPT-----AHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLEL 60
           PPA    I+A+PT      H+   +EC +C E+  VG  ++Q+PCNH FH++CI  WLE 
Sbjct: 202 PPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQ 261

Query: 61  RDTFPVCR 64
            DT PVCR
Sbjct: 262 HDTCPVCR 269

BLAST of MS015185 vs. ExPASy Swiss-Prot
Match: Q6DIP3 (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-13
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 1   PPASESSIKAMPT-----AHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLEL 60
           PPA    I+A+PT      H+   +EC +C E+  VG  ++Q+PCNH FH++CI  WLE 
Sbjct: 201 PPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQ 260

Query: 61  RDTFPVCR 64
            DT PVCR
Sbjct: 261 HDTCPVCR 268

BLAST of MS015185 vs. ExPASy TrEMBL
Match: A0A6J1G0W4 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111449680 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SI AMP+ H+++Q +CVICL+E+EVGGL K+MPCNHKFH +CI KWLEL  + P
Sbjct: 81  PPASKASIIAMPSVHVSEQTQCVICLDEIEVGGLAKEMPCNHKFHGDCIEKWLELHGSCP 140

Query: 61  VCRYQMP 68
           VCRY+MP
Sbjct: 141 VCRYEMP 147

BLAST of MS015185 vs. ExPASy TrEMBL
Match: A0A5D3D3N1 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00370 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-21
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SIKAMP+  +++  ECVICL+E+EVGGL KQMPCNHKFH  CI KWLEL  + P
Sbjct: 78  PPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMPCNHKFHGECIQKWLELHGSCP 137

Query: 61  VCRYQMP 68
           VCRYQMP
Sbjct: 138 VCRYQMP 144

BLAST of MS015185 vs. ExPASy TrEMBL
Match: A0A1S3BFQ2 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103489128 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-21
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SIKAMP+  +++  ECVICL+E+EVGGL KQMPCNHKFH  CI KWLEL  + P
Sbjct: 78  PPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMPCNHKFHGECIQKWLELHGSCP 137

Query: 61  VCRYQMP 68
           VCRYQMP
Sbjct: 138 VCRYQMP 144

BLAST of MS015185 vs. ExPASy TrEMBL
Match: A0A6J1HTX2 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC111467433 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-21
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SI AMP+ H++ Q ECVICL+E+EVGG+ K+MPCNHKFH +CI KWLEL  + P
Sbjct: 81  PPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMPCNHKFHGDCIEKWLELHGSCP 140

Query: 61  VCRYQMP 68
           VCRY+MP
Sbjct: 141 VCRYEMP 147

BLAST of MS015185 vs. ExPASy TrEMBL
Match: A0A0A0KU18 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605210 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPAS++SIKAMP+  +++  ECVICL+E+EVG L KQMPCNHKFH +CI KWLEL  + P
Sbjct: 78  PPASKASIKAMPSLPVSEVTECVICLDEIEVGRLAKQMPCNHKFHGDCIQKWLELHGSCP 137

Query: 61  VCRYQMP 68
           VCRYQMP
Sbjct: 138 VCRYQMP 144

BLAST of MS015185 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-17
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPA + +++A+ T  + + ++C +CL++ E+G   K MPC HKFHS+C+  WLEL  + P
Sbjct: 202 PPAKKEAVEALATVKIEETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCP 261

Query: 61  VCRYQMP 68
           VCRYQ+P
Sbjct: 262 VCRYQLP 268

BLAST of MS015185 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQ-QIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTF 60
           PPAS++SI AMP   ++  + ECVICLEE +    +K+MPC H+FH  CI KWL    + 
Sbjct: 91  PPASKASIDAMPIVEIDGCEGECVICLEEWKSEETVKEMPCKHRFHGGCIEKWLGFHGSC 150

Query: 61  PVCRYQMP 68
           PVCRY+MP
Sbjct: 151 PVCRYEMP 158

BLAST of MS015185 vs. TAIR 10
Match: AT5G56340.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFP 60
           PPA + +++A+PT  + + ++C +CL++ E G   K+MPC HKFH  CI  WLEL  + P
Sbjct: 238 PPARKEAVEALPTVKIMEPLQCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCP 297

Query: 61  VCRYQMP 68
           VCR+++P
Sbjct: 298 VCRFELP 304

BLAST of MS015185 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 3.3e-16
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 1   PPASESSIKAMPTAHMNQQI------ECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLE 60
           PPAS+S+I A+PT  + + +      +C +C++E E G  +KQMPC H FH +C+  WLE
Sbjct: 189 PPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLE 248

Query: 61  LRDTFPVCRYQMP 68
           L ++ PVCR+++P
Sbjct: 249 LHNSCPVCRFELP 261

BLAST of MS015185 vs. TAIR 10
Match: AT4G26400.2 (RING/U-box superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-15
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 2   PASESSIKAMPTAHMNQQIECVICLEEMEVGGLIKQMPCNHKFHSNCIGKWLELRDTFPV 61
           PA +  +  +PT  +++ ++C ICL++ + G   K+MPC HKFH  CI  WLEL  + PV
Sbjct: 221 PARKEVVDNLPTVKISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPV 280

Query: 62  CRYQMP 68
           CRY++P
Sbjct: 281 CRYELP 286

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038891708.11.9e-2171.64E3 ubiquitin-protein ligase MPSR1-like [Benincasa hispida][more]
KAG7013138.13.2e-2167.16E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ... [more]
KAG6574079.13.2e-2167.16E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022945451.13.2e-2167.16E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata][more]
XP_008446365.15.5e-2170.15PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0034425.1 E... [more]
Match NameE-valueIdentityDescription
Q6AVN25.9e-1849.25E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI... [more]
Q9LQX21.6e-1552.94E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ... [more]
Q8LPN74.7e-1543.84E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
Q7T0Q38.9e-1447.06E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis OX=8355 GN=rnf126-a PE=2 ... [more]
Q6DIP31.5e-1347.06E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 ... [more]
Match NameE-valueIdentityDescription
A0A6J1G0W41.6e-2167.16E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A5D3D3N12.7e-2170.15E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3BFQ22.7e-2170.15E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103489128 P... [more]
A0A6J1HTX23.5e-2167.16E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC1114674... [more]
A0A0A0KU181.7e-2068.66RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605210 P... [more]
Match NameE-valueIdentityDescription
AT1G55530.11.8e-1746.27RING/U-box superfamily protein [more]
AT1G26800.11.1e-1652.94RING/U-box superfamily protein [more]
AT5G56340.11.1e-1644.78RING/U-box superfamily protein [more]
AT3G19950.13.3e-1643.84RING/U-box superfamily protein [more]
AT4G26400.21.3e-1543.94RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 22..62
e-value: 6.1E-5
score: 32.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 21..63
e-value: 1.3E-11
score: 44.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 22..63
score: 10.851695
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 1..67
e-value: 3.3E-19
score: 70.4
NoneNo IPR availablePANTHERPTHR15710:SF132E3 UBIQUITIN-PROTEIN LIGASE MPSR1coord: 1..67
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 1..67
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 12..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015185.1MS015185.1mRNA