MS015184 (gene) Bitter gourd (TR) v1

Overview


Name	MS015184
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold2: 1673456 .. 1673601 (-)
RNA-Seq Expression	MS015184
Synteny	MS015184

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCCTGCAACCACAGAGACGCCAAGTCGCCGACGGGGAGAATTCTAACGCCACAGCGCAATCGGGCTTTTACAGTACAGAATCAAACAGGCTTCAACAACGAAACCACATTCATTCCGCCGGAACTCTGGCTCGGCCGGTAGCT

mRNA sequence

TTCTCCTGCAACCACAGAGACGCCAAGTCGCCGACGGGGAGAATTCTAACGCCACAGCGCAATCGGGCTTTTACAGTACAGAATCAAACAGGCCAACAACGAAACCACATTCATTCCGCCGGAACTCTGGCTCGGCCGGTAGCT

Coding sequence (CDS)

TTCTCCTGCAACCACAGAGACGCCAAGTCGCCGACGGGGAGAATTCTAACGCCACAGCGCAATCGGGCTTTTACAGTACAGAATCAAACAGGCCAACAACGAAACCACATTCATTCCGCCGGAACTCTGGCTCGGCCGGTAGCT

Protein sequence

FSCNHRDAKSPTGRILTPQRNRAFTVQNQTGQQRNHIHSAGTLARPVA

Homology

[Close]

BLAST of MS015184 vs. NCBI nr
Match: KGN51926.1 (hypothetical protein Csa_007733 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 4.0e-05
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1  FSCNHRDAKSPTGRILTPQRNRAFTVQNQ-TGQQRNHIHSAGTLARPVA 49
          FSC H++AKSP GR+ TP  +R F V+NQ    Q NHIHS   LARP+A
Sbjct: 27 FSCYHKEAKSPAGRLSTPPLDRDFKVRNQIASTQPNHIHSGRKLARPIA 75

[Close]

BLAST of MS015184 vs. ExPASy TrEMBL
Match: A0A0A0KVZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605200 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 1  FSCNHRDAKSPTGRILTPQRNRAFTVQNQ-TGQQRNHIHSAGTLARPVA 49
          FSC H++AKSP GR+ TP  +R F V+NQ    Q NHIHS   LARP+A
Sbjct: 27 FSCYHKEAKSPAGRLSTPPLDRDFKVRNQIASTQPNHIHSGRKLARPIA 75

The following BLAST results are available for this feature:

BLAST of MS015184 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51926.1	4.0e-05	57.14	hypothetical protein Csa_007733 [Cucumis sativus]	[more]

BLAST of MS015184 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVZ6	1.9e-05	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605200 PE=4 SV=1	[more]

BLAST of MS015184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015184.1	MS015184.1	mRNA