MS015019 (gene) Bitter gourd (TR) v1

Overview
NameMS015019
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold2: 593659 .. 593928 (-)
RNA-Seq ExpressionMS015019
SyntenyMS015019
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTGAAAATTTCCAGTTCAAATCCCATGCTCATCATGGTTTTCATTCAAATGACTATGGAGGTTACATTTCTGACTCTGCGCTCGTGACTCGAAGGCACCACAAAAACCATAGACCTCATGTAACCTTCAGCGACGATTGCAACGACAAATCTGATGTTCGCGAGGCTCCTAGATACCACCATGCTCACTCCTACACCGAGGACATCGATGAGGAGGCCGAGGAGTTCATCAGGCTGAAACACAAGAAATTGGAAACAAACAAA

mRNA sequence

ATGTCTTTTGAAAATTTCCAGTTCAAATCCCATGCTCATCATGGTTTTCATTCAAATGACTATGGAGGTTACATTTCTGACTCTGCGCTCGTGACTCGAAGGCACCACAAAAACCATAGACCTCATGTAACCTTCAGCGACGATTGCAACGACAAATCTGATGTTCGCGAGGCTCCTAGATACCACCATGCTCACTCCTACACCGAGGACATCGATGAGGAGGCCGAGGAGTTCATCAGGCTGAAACACAAGAAATTGGAAACAAACAAA

Coding sequence (CDS)

ATGTCTTTTGAAAATTTCCAGTTCAAATCCCATGCTCATCATGGTTTTCATTCAAATGACTATGGAGGTTACATTTCTGACTCTGCGCTCGTGACTCGAAGGCACCACAAAAACCATAGACCTCATGTAACCTTCAGCGACGATTGCAACGACAAATCTGATGTTCGCGAGGCTCCTAGATACCACCATGCTCACTCCTACACCGAGGACATCGATGAGGAGGCCGAGGAGTTCATCAGGCTGAAACACAAGAAATTGGAAACAAACAAA

Protein sequence

MSFENFQFKSHAHHGFHSNDYGGYISDSALVTRRHHKNHRPHVTFSDDCNDKSDVREAPRYHHAHSYTEDIDEEAEEFIRLKHKKLETNK
Homology
BLAST of MS015019 vs. NCBI nr
Match: KAG6573703.1 (hypothetical protein SDJN03_27590, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 0

Query: 1  MSFENFQFKS-HAHHGFHSND-YGGYISDSALVTRRHHKNHRPHVTFSDDCNDKSDVREA 60
          MSF + Q KS H HHG HS+D YGGY+SDS LVTRRH K+HR HVTFS+D N+ SDV EA
Sbjct: 1  MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDINEISDVNEA 60

Query: 61 PRYHHAHSYTEDIDEEAEEFIRLKHKKLETN 90
           R       TE+ID+ AEEFIRLKH ++ +N
Sbjct: 61 SR----RCRTENIDDVAEEFIRLKHNQMSSN 87

BLAST of MS015019 vs. NCBI nr
Match: KAA0034268.1 (hypothetical protein E6C27_scaffold65G002670 [Cucumis melo var. makuwa] >TYK15652.1 hypothetical protein E5676_scaffold35G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-16
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1  MSFENFQFKSHAHHGF-HSNDYGGYISDSALVTRRHHKNHRPHVTFSDDCNDK-SDVREA 60
          MS  N Q K +   G   S+DYGGYISDS L TR+HHKN +PHVTFSD+ N++  DV + 
Sbjct: 1  MSSRNSQLKFNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHKT 60

Query: 61 PRYHHAHSYTEDIDEEAEEFIRLKHKKL 87
           ++ HAH YT DI++EAEEFIRLKH ++
Sbjct: 61 SKHRHAHFYTNDINDEAEEFIRLKHNQM 88

BLAST of MS015019 vs. ExPASy TrEMBL
Match: A0A0A0KQ47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598070 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-18
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 1  MSFENFQFKSHAHHGFH-SNDYGGYISDSALVTRRHHKNHRPHVTFSDDCNDKSDVREAP 60
          MSF N + K +  HG H S+DYGGYISDS L TR++HKN +PHVTFS   N  SDV +  
Sbjct: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTS 60

Query: 61 RYHHAHSYTEDIDEEAEEFIRLKHKKL 87
          ++HHAH YT+DI++EAEEFIRLK  ++
Sbjct: 61 KHHHAHFYTDDINDEAEEFIRLKQNQM 87

BLAST of MS015019 vs. ExPASy TrEMBL
Match: A0A5A7SUE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001490 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-16
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1  MSFENFQFKSHAHHGF-HSNDYGGYISDSALVTRRHHKNHRPHVTFSDDCNDK-SDVREA 60
          MS  N Q K +   G   S+DYGGYISDS L TR+HHKN +PHVTFSD+ N++  DV + 
Sbjct: 1  MSSRNSQLKFNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHKT 60

Query: 61 PRYHHAHSYTEDIDEEAEEFIRLKHKKL 87
           ++ HAH YT DI++EAEEFIRLKH ++
Sbjct: 61 SKHRHAHFYTNDINDEAEEFIRLKHNQM 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6573703.11.0e-1761.54hypothetical protein SDJN03_27590, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0034268.17.2e-1656.82hypothetical protein E6C27_scaffold65G002670 [Cucumis melo var. makuwa] >TYK1565... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQ472.8e-1858.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598070 PE=4 SV=1[more]
A0A5A7SUE33.5e-1656.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015019.1MS015019.1mRNA