MS014973 (gene) Bitter gourd (TR) v1

Overview
NameMS014973
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold2: 353406 .. 353528 (-)
RNA-Seq ExpressionMS014973
SyntenyMS014973
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTCAAAATTAATATCAACTCCAAACGGTGAACTTGCAGGGCATATTGCAGCACGCAAAAGATCATTAAATGGAGTTAAGTCGTTCAAAGAAGATAAACTCCATCATGAAAGATCATGTCAA

mRNA sequence

CATTCAAAATTAATATCAACTCCAAACGGTGAACTTGCAGGGCATATTGCAGCACGCAAAAGATCATTAAATGGAGTTAAGTCGTTCAAAGAAGATAAACTCCATCATGAAAGATCATGTCAA

Coding sequence (CDS)

CATTCAAAATTAATATCAACTCCAAACGGTGAACTTGCAGGGCATATTGCAGCACGCAAAAGATCATTAAATGGAGTTAAGTCGTTCAAAGAAGATAAACTCCATCATGAAAGATCATGTCAA

Protein sequence

HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ
Homology
BLAST of MS014973 vs. NCBI nr
Match: XP_022151948.1 (putative ABC transporter C family member 15 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-09
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ 42
           +++LIS PNGEL+ HIAA KRSLNGVK FKEDKLHHER CQ
Sbjct: 812 YAELISNPNGELSRHIAAHKRSLNGVKPFKEDKLHHERPCQ 852

BLAST of MS014973 vs. NCBI nr
Match: KAG6601577.1 (ABC transporter C family member 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ 42
           +++LIS  NGELA HIAA +RSLNGVK  KEDK HH+R C+
Sbjct: 795 YAELISDSNGELARHIAAHRRSLNGVKPLKEDKPHHKRPCK 835

BLAST of MS014973 vs. NCBI nr
Match: XP_022956964.1 (putative ABC transporter C family member 15 [Cucurbita moschata])

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ 42
           +++LIS  NGELA HIAA +RSLNGVK  KEDK HH+R C+
Sbjct: 795 YAELISDSNGELARHIAAHRRSLNGVKPLKEDKPHHKRPCK 835

BLAST of MS014973 vs. NCBI nr
Match: KAG7032342.1 (ABC transporter C family member 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ 42
           +++LIS  NGELA HIAA +RSLNGVK  KEDK HH+R C+
Sbjct: 795 YAELISDSNGELARHIAAHRRSLNGVKPLKEDKPHHKRPCK 835

BLAST of MS014973 vs. NCBI nr
Match: XP_038892249.1 (putative ABC transporter C family member 15 [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ 42
           +++L+S  NGELA HIAA +RSLNGVK FKE+K HH+R C+
Sbjct: 795 YAELMSDSNGELARHIAAHRRSLNGVKPFKEEKPHHKRPCK 835

BLAST of MS014973 vs. ExPASy TrEMBL
Match: A0A6J1DDJ4 (putative ABC transporter C family member 15 OS=Momordica charantia OX=3673 GN=LOC111019797 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.2e-09
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ 42
           +++LIS PNGEL+ HIAA KRSLNGVK FKEDKLHHER CQ
Sbjct: 812 YAELISNPNGELSRHIAAHKRSLNGVKPFKEDKLHHERPCQ 852

BLAST of MS014973 vs. ExPASy TrEMBL
Match: A0A6J1H0K9 (putative ABC transporter C family member 15 OS=Cucurbita moschata OX=3662 GN=LOC111458489 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.6e-06
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ 42
           +++LIS  NGELA HIAA +RSLNGVK  KEDK HH+R C+
Sbjct: 795 YAELISDSNGELARHIAAHRRSLNGVKPLKEDKPHHKRPCK 835

BLAST of MS014973 vs. ExPASy TrEMBL
Match: A0A5D3CUX0 (Putative ABC transporter C family member 15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002000 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHER 39
           +++L+S  NGELA HIAA +R LNGVK FKEDK HH+R
Sbjct: 658 YAELMSDSNGELARHIAAHRRFLNGVKPFKEDKPHHKR 695

BLAST of MS014973 vs. ExPASy TrEMBL
Match: A0A1S3BF27 (putative ABC transporter C family member 15 OS=Cucumis melo OX=3656 GN=LOC103488915 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-04
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHER 39
           +++L+S  NGELA HIAA +R LNGVK FKEDK HH+R
Sbjct: 795 YAELMSDSNGELARHIAAHRRFLNGVKPFKEDKPHHKR 832

BLAST of MS014973 vs. ExPASy TrEMBL
Match: A0A6J1K6R8 (putative ABC transporter C family member 15 OS=Cucurbita maxima OX=3661 GN=LOC111492148 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-04
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 1   HSKLISTPNGELAGHIAARKRSLNGVKSFKEDKLHHERSCQ 42
           +++LIS  NGELA HIAA +RSLNGVK  KED+ HH+R C+
Sbjct: 795 YAELISDSNGELARHIAAHRRSLNGVKPLKEDE-HHKRPCK 834

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151948.16.6e-0978.05putative ABC transporter C family member 15 [Momordica charantia][more]
KAG6601577.12.0e-0565.85ABC transporter C family member 3, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022956964.12.0e-0565.85putative ABC transporter C family member 15 [Cucurbita moschata][more]
KAG7032342.12.0e-0565.85ABC transporter C family member 3, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038892249.12.6e-0563.41putative ABC transporter C family member 15 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DDJ43.2e-0978.05putative ABC transporter C family member 15 OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1H0K99.6e-0665.85putative ABC transporter C family member 15 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A5D3CUX02.4e-0465.79Putative ABC transporter C family member 15 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BF272.4e-0465.79putative ABC transporter C family member 15 OS=Cucumis melo OX=3656 GN=LOC103488... [more]
A0A6J1K6R83.1e-0463.41putative ABC transporter C family member 15 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014973.1MS014973.1mRNA