MS014948 (gene) Bitter gourd (TR) v1

Overview


Name	MS014948
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein L22p/L17e family protein isoform 1
Location	scaffold2: 163188 .. 163460 (+)
RNA-Seq Expression	MS014948
Synteny	MS014948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCGTCATGGAGTTTGCTGAGAATTTGGTAGTAAGACTAATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACCTGTACGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCTATCCACTTCGTCCTTACGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGCAGTGGGATGCACAAATTAGCCAGGCTCCTGGTAGAAGAGACCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAG

mRNA sequence

ATGAAATTCGTCATGGAGTTTGCTGAGAATTTGGTAGTAAGACTAATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACCTGTACGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCTATCCACTTCGTCCTTACGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGCAGTGGGATGCACAAATTAGCCAGGCTCCTGGTAGAAGAGACCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAG

Coding sequence (CDS)

ATGAAATTCGTCATGGAGTTTGCTGAGAATTTGGTAGTAAGACTAATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACCTGTACGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCTATCCACTTCGTCCTTACGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGCAGTGGGATGCACAAATTAGCCAGGCTCCTGGTAGAAGAGACCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAG

Protein sequence

MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHNSQLQWDAQISQAPGRRDPYDDMLQDINNNSK

Homology

[Close]

BLAST of MS014948 vs. NCBI nr
Match: XP_022151828.1 (uncharacterized protein LOC111019716 [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 4.0e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQLQWDAQISQAPGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of MS014948 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFVMEFAENLV+RLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL+WDAQISQAPGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLKWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of MS014948 vs. NCBI nr
Match: XP_022956462.1 (uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956464.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022998787.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998795.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998804.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998812.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_023526352.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526360.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526369.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
           QL+WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of MS014948 vs. NCBI nr
Match: KAG7012731.1 (hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.4 bits (459), Expect = 3.5e-42
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1   MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
           MKF+MEFAENLV+R+MEDPKERDRKFRE LYAVKDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 90  MKFIMEFAENLVLRIMEDPKERDRKFRERLYAVKDRCQKTKEMWSYPLRPYGFWTFDRHN 149

Query: 61  SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
           +QL WDAQISQ PGRRDPYDDMLQDI+NNSK
Sbjct: 150 AQLHWDAQISQVPGRRDPYDDMLQDIHNNSK 180

[Close]

BLAST of MS014948 vs. NCBI nr
Match: XP_011655561.1 (uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAE+LV+RLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL+WD QISQ PGRRDPYDDMLQD NN+SK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 91

[Close]

BLAST of MS014948 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQLQWDAQISQAPGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of MS014948 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.5e-43
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
           QL+WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of MS014948 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.5e-43
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
           QL+WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of MS014948 vs. ExPASy TrEMBL
Match: A0A1S3BE41 (uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.1e-41
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAE+LV+RLMEDPKERDR+FREH+YAVKDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL+WD QISQ PGRRDPYDD+LQD NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of MS014948 vs. ExPASy TrEMBL
Match: A0A5A7SSK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002250 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.1e-41
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAE+LV+RLMEDPKERDR+FREH+YAVKDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 92
          SQL+WD QISQ PGRRDPYDD+LQD NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of MS014948 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 144.1 bits (362), Expect = 5.7e-35
Identity = 62/85 (72.94%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          M F+MEFAENLV+RLME+P+ERDRK REH+Y + +RC+K KEMW+ P+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQD 86
          +QL+WD QISQ  GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

[Close]

BLAST of MS014948 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 144.1 bits (362), Expect = 5.7e-35
Identity = 62/85 (72.94%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          M F+MEFAENLV+RLME+P+ERDRK REH+Y + +RC+K KEMW+ P+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQAPGRRDPYDDMLQD 86
          +QL+WD QISQ  GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

The following BLAST results are available for this feature:

BLAST of MS014948 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151828.1	4.0e-46	100.00	uncharacterized protein LOC111019716 [Momordica charantia]	[more]
XP_038891434.1	2.6e-45	97.80	uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara...	[more]
XP_022956462.1	1.6e-42	90.11	uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 unchar...	[more]
KAG7012731.1	3.5e-42	90.11	hypothetical protein SDJN02_25484, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011655561.1	1.7e-41	86.81	uncharacterized protein LOC101213251 [Cucumis sativus]	[more]

BLAST of MS014948 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DD92	1.9e-46	100.00	uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1K907	7.5e-43	90.11	uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347...	[more]
A0A6J1GWE2	7.5e-43	90.11	uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A1S3BE41	4.1e-41	86.81	uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=...	[more]
A0A5A7SSK1	4.1e-41	86.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS014948 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67350.1	5.7e-35	72.94	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]
AT1G67350.2	5.7e-35	72.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PFAM	PF17250	NDUFB11	coord: 1..85 e-value: 3.9E-51 score: 171.6
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PANTHER	PTHR37709	EXPRESSED PROTEIN	coord: 1..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014948.1	MS014948.1	mRNA