MS014821 (gene) Bitter gourd (TR) v1

Overview


Name	MS014821
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zf-RVT domain-containing protein
Location	scaffold493: 554391 .. 554585 (-)
RNA-Seq Expression	MS014821
Synteny	MS014821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGTATTTGGAAACTTTGTATTCCTACAAAGATCATGACATTCCTATGGAAAACGATGCATGGATTCCTTCCTACCATGTATAATCTACGAAAGAAAGGTTTGGACATCTTACCCTATTGCCCATGTTGCAAAACGAAGGTTGAAACCACAGTTCATGCCCTTTTGCTCTGCCCTCGAGTGAAGCCGATATGG

mRNA sequence

AAAGGTATTTGGAAACTTTGTATTCCTACAAAGATCATGACATTCCTATGGAAAACGATGCATGGATTCCTTCCTACCATGTATAATCTACGAAAGAAAGGTTTGGACATCTTACCCTATTGCCCATGTTGCAAAACGAAGGTTGAAACCACAGTTCATGCCCTTTTGCTCTGCCCTCGAGTGAAGCCGATATGG

Coding sequence (CDS)

AAAGGTATTTGGAAACTTTGTATTCCTACAAAGATCATGACATTCCTATGGAAAACGATGCATGGATTCCTTCCTACCATGTATAATCTACGAAAGAAAGGTTTGGACATCTTACCCTATTGCCCATGTTGCAAAACGAAGGTTGAAACCACAGTTCATGCCCTTTTGCTCTGCCCTCGAGTGAAGCCGATATGG

Protein sequence

KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPRVKPIW

Homology

[Close]

BLAST of MS014821 vs. NCBI nr
Match: RYR44318.1 (hypothetical protein Ahy_A08g040672 [Arachis hypogaea])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1   KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
           + IWKL +P KI TFLW+  H  LP   NL KK +   P CP C  + E+T HALLLCP 
Sbjct: 805 RDIWKLKVPQKIRTFLWRASHNILPVFQNLYKKKISNTPICPICLQEPESTEHALLLCPW 864

Query: 61  VKPIW 66
            + +W
Sbjct: 865 TRAVW 869

[Close]

BLAST of MS014821 vs. NCBI nr
Match: KAF7832946.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 73.9 bits (180), Expect = 5.6e-10
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 1   KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
           K +WKL IP KI  FLW+   G LP   NL K+G+D+ P CP C ++ E+  HA L C +
Sbjct: 549 KKLWKLQIPAKIKFFLWRVCKGILPVCSNLAKRGMDVAPCCPVCSSEEESICHATLFCSQ 608

Query: 61  VKPIW 66
           ++ +W
Sbjct: 609 IRALW 613

[Close]

BLAST of MS014821 vs. NCBI nr
Match: RYR47522.1 (hypothetical protein Ahy_A07g033454 [Arachis hypogaea])

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 1   KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
           + IWKL +P KI TFLW+  H  LP   NL  K +   P CP C  + E+T HALLLCP 
Sbjct: 777 RDIWKLRVPQKIRTFLWRASHNILPVFQNLYNKKISNTPICPICLQEPESTEHALLLCPW 836

Query: 61  VKPIW 66
            +  W
Sbjct: 837 TRAAW 841

[Close]

BLAST of MS014821 vs. NCBI nr
Match: RYR63043.1 (hypothetical protein Ahy_A04g020830 [Arachis hypogaea])

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-09
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1   KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
           K IWKL +P K+  FLWK +H  LP   NL +K + + P C  C+ + ET  HALLLCP 
Sbjct: 311 KVIWKLQVPQKVRMFLWKAVHRILPVNKNLHQKRITVAPTCSICQREEETIEHALLLCPW 370

Query: 61  VKPIW 66
            + +W
Sbjct: 371 TRAVW 375

[Close]

BLAST of MS014821 vs. NCBI nr
Match: XP_025692479.1 (uncharacterized protein LOC112794712 [Arachis hypogaea])

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-09
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1    KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
            K IWKL +P K+  FLWK +H  LP   NL +K + + P C  C+ + ET  HALLLCP 
Sbjct: 1005 KVIWKLQVPQKVRMFLWKAVHRILPVNKNLHQKRITVAPTCSICQREEETIEHALLLCPW 1064

Query: 61   VKPIW 66
             + +W
Sbjct: 1065 TRAVW 1069

[Close]

BLAST of MS014821 vs. ExPASy TrEMBL
Match: A0A445C0H0 (RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040672 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1   KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
           + IWKL +P KI TFLW+  H  LP   NL KK +   P CP C  + E+T HALLLCP 
Sbjct: 805 RDIWKLKVPQKIRTFLWRASHNILPVFQNLYKKKISNTPICPICLQEPESTEHALLLCPW 864

Query: 61  VKPIW 66
            + +W
Sbjct: 865 TRAVW 869

[Close]

BLAST of MS014821 vs. ExPASy TrEMBL
Match: A0A445C9A7 (CCHC-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g033454 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-10
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 1   KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
           + IWKL +P KI TFLW+  H  LP   NL  K +   P CP C  + E+T HALLLCP 
Sbjct: 777 RDIWKLRVPQKIRTFLWRASHNILPVFQNLYNKKISNTPICPICLQEPESTEHALLLCPW 836

Query: 61  VKPIW 66
            +  W
Sbjct: 837 TRAAW 841

[Close]

BLAST of MS014821 vs. ExPASy TrEMBL
Match: A0A445DIN7 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g020830 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1   KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
           K IWKL +P K+  FLWK +H  LP   NL +K + + P C  C+ + ET  HALLLCP 
Sbjct: 311 KVIWKLQVPQKVRMFLWKAVHRILPVNKNLHQKRITVAPTCSICQREEETIEHALLLCPW 370

Query: 61  VKPIW 66
            + +W
Sbjct: 371 TRAVW 375

[Close]

BLAST of MS014821 vs. ExPASy TrEMBL
Match: A0A6P4CZU6 (uncharacterized protein LOC107483570 OS=Arachis duranensis OX=130453 GN=LOC107483570 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 1    KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
            K IWKL +P K+  FLWK +H  LP   NL +K + + P C  C+ + ET  HALLLCP 
Sbjct: 1005 KVIWKLQVPQKVRMFLWKAVHRILPVNKNLHQKRITVAPTCSICQREEETIEHALLLCPW 1064

Query: 61   VKPIW 66
             + +W
Sbjct: 1065 TRAVW 1069

[Close]

BLAST of MS014821 vs. ExPASy TrEMBL
Match: A0A7J6G6P2 (Peptidase A1 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_021646 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 4   WKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPRVKP 63
           WKL +P+K+  F+WK  H  LP    L ++ +   PYCP CK + ET  HAL LC R K 
Sbjct: 571 WKLQLPSKLRIFVWKVFHNILPVASELNRRHIAASPYCPLCKLQQETIPHALFLCSRAKE 630

Query: 64  IW 66
           +W
Sbjct: 631 VW 632

[Close]

BLAST of MS014821 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 7.2e-08
Identity = 24/65 (36.92%), Postives = 34/65 (52.31%), Query Frame = 0


Query: 1  KGIWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPR 60
          + IWKL +  KI  FLW+ + G L T   LR + +D  P C  C  + ET  H +  CP 
Sbjct: 35 QAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPY 94

Query: 61 VKPIW 66
           + +W
Sbjct: 95 TQSVW 99

[Close]

BLAST of MS014821 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 2.6e-05
Identity = 23/63 (36.51%), Postives = 32/63 (50.79%), Query Frame = 0


Query: 3  IWKLCIPTKIMTFLWKTMHGFLPTMYNLRKKGLDILPYCPCCKTKVETTVHALLLCPRVK 62
          IWKL    KI  FLWK + G L T  NL+++ +   P C  C  + ET+ H    C   +
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 63 PIW 66
           +W
Sbjct: 78 QVW 80

The following BLAST results are available for this feature:

BLAST of MS014821 vs. NCBI nr


Match Name	E-value	Identity	Description
RYR44318.1	1.5e-10	49.23	hypothetical protein Ahy_A08g040672 [Arachis hypogaea]	[more]
KAF7832946.1	5.6e-10	44.62	putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
RYR47522.1	1.6e-09	47.69	hypothetical protein Ahy_A07g033454 [Arachis hypogaea]	[more]
RYR63043.1	2.8e-09	46.15	hypothetical protein Ahy_A04g020830 [Arachis hypogaea]	[more]
XP_025692479.1	2.8e-09	46.15	uncharacterized protein LOC112794712 [Arachis hypogaea]	[more]

BLAST of MS014821 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445C0H0	7.1e-11	49.23	RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040672 ...	[more]
A0A445C9A7	7.8e-10	47.69	CCHC-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g03345...	[more]
A0A445DIN7	1.3e-09	46.15	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g020830 PE=4 SV=1	[more]
A0A6P4CZU6	1.3e-09	46.15	uncharacterized protein LOC107483570 OS=Arachis duranensis OX=130453 GN=LOC10748...	[more]
A0A7J6G6P2	1.7e-09	45.16	Peptidase A1 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_02164...	[more]

BLAST of MS014821 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02650.1	7.2e-08	36.92	Ribonuclease H-like superfamily protein	[more]
AT3G25270.1	2.6e-05	36.51	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 3..65 e-value: 1.3E-15 score: 57.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014821.1	MS014821.1	mRNA